Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 151 |
| Acc36I | ACCTGC | 1 cut(s) | 151 |
| AcuI | CTGAAG | 2 cut(s) | 234, 403 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 434 |
| AflII | CTTAAG | 1 cut(s) | 533 |
| AjnI | CCWGG | 2 cut(s) | 163, 241 |
| AluBI | AGCT | 6 cut(s) | 20, 131, 248, 305, 417, 494 |
| AluI | AGCT | 6 cut(s) | 20, 131, 248, 305, 417, 494 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 448 |
| AoxI | GGCC | 3 cut(s) | 28, 91, 175 |
| ApeKI | GCWGC | 2 cut(s) | 131, 152 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 120, 152 |
| AspA2I | CCTAGG | 1 cut(s) | 94 |
| AspS9I | GGNCC | 1 cut(s) | 29 |
| AsuC2I | CCSGG | 2 cut(s) | 289, 435 |
| AsuHPI | GGTGA | 2 cut(s) | 350, 401 |
| AvrII | CCTAGG | 1 cut(s) | 94 |
| BbvCI | CCTCAGC | 1 cut(s) | 301 |
| BbvI | GCAGC | 2 cut(s) | 118, 139 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 2 cut(s) | 165, 243 |
| BcnI | CCSGG | 2 cut(s) | 289, 435 |
| BfaI | CTAG | 2 cut(s) | 95, 429 |
| BfmI | CTRYAG | 3 cut(s) | 33, 132, 440 |
| BfrI | CTTAAG | 1 cut(s) | 533 |
| BfuAI | ACCTGC | 1 cut(s) | 151 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 36 |
| BisI | GCNGC | 2 cut(s) | 132, 153 |
| BlnI | CCTAGG | 1 cut(s) | 94 |
| BlsI | GCNGC | 2 cut(s) | 133, 154 |
| Bme1390I | CCNGG | 4 cut(s) | 165, 243, 289, 435 |
| BmgT120I | GGNCC | 1 cut(s) | 29 |
| BmrFI | CCNGG | 4 cut(s) | 165, 243, 289, 435 |
| BpmI | CTGGAG | 3 cut(s) | 6, 264, 381 |
| Bpu10I | CCTNAGC | 1 cut(s) | 301 |
| BpuEI | CTTGAG | 2 cut(s) | 342, 350 |
| BpuMI | CCSGG | 2 cut(s) | 289, 435 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 178, 241, 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 434 |
| Bse3DI | GCAATG | 1 cut(s) | 99 |
| BseBI | CCWGG | 2 cut(s) | 165, 243 |
| BseDI | CCNNGG | 4 cut(s) | 94, 178, 241, 433 |
| BseGI | GGATG | 1 cut(s) | 222 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 434 |
| BseMI | GCAATG | 1 cut(s) | 99 |
| BseMII | CTCAG | 2 cut(s) | 315, 533 |
| BseXI | GCAGC | 2 cut(s) | 118, 139 |
| BshFI | GGCC | 3 cut(s) | 30, 93, 177 |
| BsiSI | CCGG | 2 cut(s) | 288, 435 |
| BslFI | GGGAC | 1 cut(s) | 289 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 434 |
| BsmFI | GGGAC | 1 cut(s) | 289 |
| BsnI | GGCC | 3 cut(s) | 30, 93, 177 |
| BspANI | GGCC | 3 cut(s) | 30, 93, 177 |
| BspCNI | CTCAG | 2 cut(s) | 314, 532 |
| BspMAI | CTGCAG | 3 cut(s) | 37, 136, 444 |
| BspMI | ACCTGC | 1 cut(s) | 151 |
| BspTI | CTTAAG | 1 cut(s) | 533 |
| BsrDI | GCAATG | 1 cut(s) | 99 |
| BssECI | CCNNGG | 4 cut(s) | 94, 178, 241, 433 |
| BssT1I | CCWWGG | 1 cut(s) | 94 |
| Bst2UI | CCWGG | 2 cut(s) | 165, 243 |
| Bst4CI | ACNGT | 2 cut(s) | 70, 344 |
| BstAFI | CTTAAG | 1 cut(s) | 533 |
| BstC8I | GCNNGC | 3 cut(s) | 37, 57, 192 |
| BstDEI | CTNAG | 2 cut(s) | 301, 519 |
| BstF5I | GGATG | 1 cut(s) | 222 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 36, 45, 152 |
| BstNI | CCWGG | 2 cut(s) | 165, 243 |
| BstSCI | CCNGG | 4 cut(s) | 163, 241, 287, 433 |
| BstSFI | CTRYAG | 3 cut(s) | 33, 132, 440 |
| BstV1I | GCAGC | 2 cut(s) | 118, 139 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 383 |
| BsuRI | GGCC | 3 cut(s) | 30, 93, 177 |
| BtsCI | GGATG | 1 cut(s) | 222 |
| BveI | ACCTGC | 1 cut(s) | 151 |
| Cac8I | GCNNGC | 3 cut(s) | 37, 57, 192 |
| CaiI | CAGNNNCTG | 1 cut(s) | 448 |
| Cfr13I | GGNCC | 1 cut(s) | 29 |
| DdeI | CTNAG | 2 cut(s) | 301, 519 |
| DraI | TTTAAA | 1 cut(s) | 466 |
| Eco130I | CCWWGG | 1 cut(s) | 94 |
| Eco57I | CTGAAG | 2 cut(s) | 234, 403 |
| EcoO109I | RGGNCCY | 1 cut(s) | 29 |
| EcoRII | CCWGG | 2 cut(s) | 163, 241 |
| EcoT14I | CCWWGG | 1 cut(s) | 94 |
| ErhI | CCWWGG | 1 cut(s) | 94 |
| FaiI | YATR | 1 cut(s) | 347 |
| FaqI | GGGAC | 1 cut(s) | 289 |
| Fnu4HI | GCNGC | 2 cut(s) | 132, 153 |
| FokI | GGATG | 1 cut(s) | 209 |
| Fsp4HI | GCNGC | 2 cut(s) | 132, 153 |
| FspBI | CTAG | 2 cut(s) | 95, 429 |
| GluI | GCNGC | 2 cut(s) | 132, 153 |
| GsuI | CTGGAG | 3 cut(s) | 6, 264, 381 |
| HaeIII | GGCC | 3 cut(s) | 30, 93, 177 |
| HapII | CCGG | 2 cut(s) | 288, 435 |
| HinfI | GANTC | 2 cut(s) | 219, 445 |
| HpaII | CCGG | 2 cut(s) | 288, 435 |
| HphI | GGTGA | 2 cut(s) | 350, 401 |
| Hpy188I | TCNGA | 2 cut(s) | 253, 522 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 23, 259, 329, 449 |
| Hpy99I | CGWCG | 1 cut(s) | 515 |
| HpyAV | CCTTC | 3 cut(s) | 20, 266, 328 |
| HpyCH4III | ACNGT | 2 cut(s) | 70, 344 |
| HpyCH4IV | ACGT | 1 cut(s) | 513 |
| HpyCH4V | TGCA | 7 cut(s) | 35, 48, 59, 134, 370, 442, 458 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 36, 45, 152 |
| HpyF3I | CTNAG | 2 cut(s) | 301, 519 |
| HpySE526I | ACGT | 1 cut(s) | 513 |
| LmnI | GCTCC | 2 cut(s) | 25, 245 |
| Lsp1109I | GCAGC | 2 cut(s) | 118, 139 |
| MaeI | CTAG | 2 cut(s) | 95, 429 |
| MaeII | ACGT | 1 cut(s) | 513 |
| MaeIII | GTNAC | 4 cut(s) | 64, 107, 136, 338 |
| MluCI | AATT | 2 cut(s) | 158, 556 |
| MlyI | GAGTC | 1 cut(s) | 228 |
| MnlI | CCTC | 5 cut(s) | 188, 310, 366, 380, 518 |
| MseI | TTAA | 3 cut(s) | 465, 534, 559 |
| MspCI | CTTAAG | 1 cut(s) | 533 |
| MspI | CCGG | 2 cut(s) | 288, 435 |
| MspR9I | CCNGG | 4 cut(s) | 165, 243, 289, 435 |
| MvaI | CCWGG | 2 cut(s) | 165, 243 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 36, 45, 152 |
| NciI | CCSGG | 2 cut(s) | 289, 435 |
| NmeAIII | GCCGAG | 1 cut(s) | 159 |
| NmuCI | GTSAC | 2 cut(s) | 136, 338 |
| PaqCI | CACCTGC | 1 cut(s) | 151 |
| PfeI | GAWTC | 1 cut(s) | 445 |
| PkrI | GCNGC | 2 cut(s) | 133, 154 |
| PleI | GAGTC | 1 cut(s) | 227 |
| PpsI | GAGTC | 1 cut(s) | 227 |
| Psp6I | CCWGG | 2 cut(s) | 163, 241 |
| PspGI | CCWGG | 2 cut(s) | 163, 241 |
| PspPI | GGNCC | 1 cut(s) | 29 |
| PstI | CTGCAG | 3 cut(s) | 37, 136, 444 |
| PstNI | CAGNNNCTG | 1 cut(s) | 448 |
| SaqAI | TTAA | 3 cut(s) | 465, 534, 559 |
| SatI | GCNGC | 2 cut(s) | 132, 153 |
| Sau96I | GGNCC | 1 cut(s) | 29 |
| SbfI | CCTGCAGG | 1 cut(s) | 37 |
| SchI | GAGTC | 1 cut(s) | 228 |
| ScrFI | CCNGG | 4 cut(s) | 165, 243, 289, 435 |
| SdaI | CCTGCAGG | 1 cut(s) | 37 |
| SfcI | CTRYAG | 3 cut(s) | 33, 132, 440 |
| SmlI | CTYRAG | 4 cut(s) | 6, 329, 357, 533 |
| SmoI | CTYRAG | 4 cut(s) | 6, 329, 357, 533 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 37 |
| Sse9I | AATT | 2 cut(s) | 158, 556 |
| SspMI | CTAG | 2 cut(s) | 95, 429 |
| StyD4I | CCNGG | 4 cut(s) | 163, 241, 287, 433 |
| StyI | CCWWGG | 1 cut(s) | 94 |
| TaaI | ACNGT | 2 cut(s) | 70, 344 |
| TaiI | ACGT | 1 cut(s) | 516 |
| TaqI | TCGA | 1 cut(s) | 510 |
| TasI | AATT | 2 cut(s) | 158, 556 |
| TfiI | GAWTC | 1 cut(s) | 445 |
| Tru1I | TTAA | 3 cut(s) | 465, 534, 559 |
| Tru9I | TTAA | 3 cut(s) | 465, 534, 559 |
| TseFI | GTSAC | 2 cut(s) | 136, 338 |
| TseI | GCWGC | 2 cut(s) | 131, 152 |
| Tsp45I | GTSAC | 2 cut(s) | 136, 338 |
| Vha464I | CTTAAG | 1 cut(s) | 533 |
| XmaJI | CCTAGG | 1 cut(s) | 94 |
| XspI | CTAG | 2 cut(s) | 95, 429 |