Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 476 |
| AciI | CCGC | 2 cut(s) | 327, 357 |
| AclWI | GGATC | 3 cut(s) | 31, 96, 109 |
| AcsI | RAATTY | 1 cut(s) | 471 |
| AfaI | GTAC | 2 cut(s) | 178, 184 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 278 |
| AgsI | TTSAA | 2 cut(s) | 60, 254 |
| AhlI | ACTAGT | 3 cut(s) | 80, 173, 179 |
| AjnI | CCWGG | 1 cut(s) | 243 |
| AluBI | AGCT | 4 cut(s) | 68, 391, 463, 482 |
| AluI | AGCT | 4 cut(s) | 68, 391, 463, 482 |
| Alw21I | GWGCWC | 1 cut(s) | 393 |
| Alw26I | GTCTC | 1 cut(s) | 449 |
| AlwI | GGATC | 3 cut(s) | 31, 96, 109 |
| Aor13HI | TCCGGA | 1 cut(s) | 476 |
| ApeKI | GCWGC | 2 cut(s) | 135, 482 |
| ApoI | RAATTY | 1 cut(s) | 471 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 82, 258 |
| AsuHPI | GGTGA | 2 cut(s) | 233, 293 |
| BamHI | GGATCC | 1 cut(s) | 101 |
| BanII | GRGCYC | 1 cut(s) | 393 |
| BbsI | GAAGAC | 1 cut(s) | 311 |
| Bbv12I | GWGCWC | 1 cut(s) | 393 |
| BbvI | GCAGC | 2 cut(s) | 122, 469 |
| BceAI | ACGGC | 1 cut(s) | 424 |
| BciT130I | CCWGG | 1 cut(s) | 245 |
| BcoDI | GTCTC | 1 cut(s) | 449 |
| BcuI | ACTAGT | 3 cut(s) | 80, 173, 179 |
| BfaI | CTAG | 3 cut(s) | 81, 174, 180 |
| BfmI | CTRYAG | 1 cut(s) | 136 |
| BisI | GCNGC | 4 cut(s) | 136, 328, 358, 483 |
| BlsI | GCNGC | 4 cut(s) | 137, 329, 359, 484 |
| BmcAI | AGTACT | 2 cut(s) | 178, 184 |
| Bme1390I | CCNGG | 1 cut(s) | 245 |
| BmiI | GGNNCC | 1 cut(s) | 103 |
| BmrFI | CCNGG | 1 cut(s) | 245 |
| BpiI | GAAGAC | 1 cut(s) | 311 |
| BpmI | CTGGAG | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 407 |
| BsaJI | CCNNGG | 1 cut(s) | 315 |
| BsaWI | WCCGGW | 1 cut(s) | 476 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 386, 416 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 278 |
| BseAI | TCCGGA | 1 cut(s) | 476 |
| BseBI | CCWGG | 1 cut(s) | 245 |
| BseDI | CCNNGG | 1 cut(s) | 315 |
| BseGI | GGATG | 1 cut(s) | 161 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 278 |
| BseMII | CTCAG | 1 cut(s) | 78 |
| BseRI | GAGGAG | 2 cut(s) | 148, 246 |
| BseXI | GCAGC | 2 cut(s) | 122, 469 |
| BseYI | CCCAGC | 1 cut(s) | 351 |
| BsiHKAI | GWGCWC | 1 cut(s) | 393 |
| BsiSI | CCGG | 1 cut(s) | 477 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 278 |
| BsmAI | GTCTC | 1 cut(s) | 449 |
| Bsp1286I | GDGCHC | 1 cut(s) | 393 |
| Bsp13I | TCCGGA | 1 cut(s) | 476 |
| Bsp143I | GATC | 3 cut(s) | 23, 101, 238 |
| BspACI | CCGC | 2 cut(s) | 327, 357 |
| BspCNI | CTCAG | 1 cut(s) | 77 |
| BspEI | TCCGGA | 1 cut(s) | 476 |
| BspLI | GGNNCC | 1 cut(s) | 103 |
| BspMAI | CTGCAG | 1 cut(s) | 140 |
| BspPI | GGATC | 3 cut(s) | 31, 96, 109 |
| BssECI | CCNNGG | 1 cut(s) | 315 |
| BssMI | GATC | 3 cut(s) | 23, 101, 238 |
| Bst2UI | CCWGG | 1 cut(s) | 245 |
| Bst4CI | ACNGT | 3 cut(s) | 267, 281, 368 |
| Bst6I | CTCTTC | 2 cut(s) | 35, 447 |
| BstDEI | CTNAG | 2 cut(s) | 64, 495 |
| BstF5I | GGATG | 1 cut(s) | 161 |
| BstKTI | GATC | 3 cut(s) | 26, 104, 241 |
| BstMAI | GTCTC | 1 cut(s) | 449 |
| BstMBI | GATC | 3 cut(s) | 23, 101, 238 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 333, 357, 491 |
| BstNI | CCWGG | 1 cut(s) | 245 |
| BstSCI | CCNGG | 1 cut(s) | 243 |
| BstSFI | CTRYAG | 1 cut(s) | 136 |
| BstV1I | GCAGC | 2 cut(s) | 122, 469 |
| BstV2I | GAAGAC | 1 cut(s) | 311 |
| BstX2I | RGATCY | 2 cut(s) | 23, 101 |
| BstYI | RGATCY | 2 cut(s) | 23, 101 |
| BtsCI | GGATG | 1 cut(s) | 161 |
| BtsI | GCAGTG | 1 cut(s) | 145 |
| BtsIMutI | CAGTG | 2 cut(s) | 145, 263 |
| Csp6I | GTAC | 2 cut(s) | 177, 183 |
| CviAII | CATG | 6 cut(s) | 34, 126, 199, 220, 274, 301 |
| CviQI | GTAC | 2 cut(s) | 177, 183 |
| DdeI | CTNAG | 2 cut(s) | 64, 495 |
| DpnI | GATC | 3 cut(s) | 25, 103, 240 |
| DpnII | GATC | 3 cut(s) | 23, 101, 238 |
| Eam1104I | CTCTTC | 2 cut(s) | 35, 447 |
| EarI | CTCTTC | 2 cut(s) | 35, 447 |
| Ecl136II | GAGCTC | 1 cut(s) | 391 |
| Eco24I | GRGCYC | 1 cut(s) | 393 |
| Eco53kI | GAGCTC | 1 cut(s) | 391 |
| EcoICRI | GAGCTC | 1 cut(s) | 391 |
| EcoRII | CCWGG | 1 cut(s) | 243 |
| EcoT38I | GRGCYC | 1 cut(s) | 393 |
| FaeI | CATG | 6 cut(s) | 37, 129, 202, 223, 277, 304 |
| FatI | CATG | 6 cut(s) | 33, 125, 198, 219, 273, 300 |
| Fnu4HI | GCNGC | 4 cut(s) | 136, 328, 358, 483 |
| FokI | GGATG | 1 cut(s) | 148 |
| FriOI | GRGCYC | 1 cut(s) | 393 |
| Fsp4HI | GCNGC | 4 cut(s) | 136, 328, 358, 483 |
| FspBI | CTAG | 3 cut(s) | 81, 174, 180 |
| GluI | GCNGC | 4 cut(s) | 136, 328, 358, 483 |
| GsaI | CCCAGC | 1 cut(s) | 355 |
| GsuI | CTGGAG | 1 cut(s) | 90 |
| HapII | CCGG | 1 cut(s) | 477 |
| Hin1II | CATG | 6 cut(s) | 37, 129, 202, 223, 277, 304 |
| HincII | GTYRAC | 1 cut(s) | 145 |
| HindII | GTYRAC | 1 cut(s) | 145 |
| HinfI | GANTC | 1 cut(s) | 488 |
| HpaII | CCGG | 1 cut(s) | 477 |
| HphI | GGTGA | 2 cut(s) | 233, 293 |
| Hpy166II | GTNNAC | 1 cut(s) | 145 |
| Hpy188I | TCNGA | 1 cut(s) | 316 |
| Hpy188III | TCNNGA | 1 cut(s) | 477 |
| Hpy8I | GTNNAC | 1 cut(s) | 145 |
| HpyAV | CCTTC | 2 cut(s) | 269, 425 |
| HpyCH4III | ACNGT | 3 cut(s) | 267, 281, 368 |
| HpyCH4V | TGCA | 2 cut(s) | 138, 277 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 333, 357, 491 |
| HpyF3I | CTNAG | 2 cut(s) | 64, 495 |
| Hsp92II | CATG | 6 cut(s) | 37, 129, 202, 223, 277, 304 |
| Kpn2I | TCCGGA | 1 cut(s) | 476 |
| Kzo9I | GATC | 3 cut(s) | 23, 101, 238 |
| LmnI | GCTCC | 1 cut(s) | 479 |
| LpnPI | CCDG | 7 cut(s) | 54, 230, 257, 330, 337, 439, 490 |
| Lsp1109I | GCAGC | 2 cut(s) | 122, 469 |
| MaeI | CTAG | 3 cut(s) | 81, 174, 180 |
| MaeIII | GTNAC | 1 cut(s) | 110 |
| MalI | GATC | 3 cut(s) | 25, 103, 240 |
| MboI | GATC | 3 cut(s) | 23, 101, 238 |
| MboII | GAAGA | 5 cut(s) | 52, 218, 248, 316, 464 |
| MflI | RGATCY | 2 cut(s) | 23, 101 |
| MhlI | GDGCHC | 1 cut(s) | 393 |
| MluCI | AATT | 2 cut(s) | 115, 471 |
| MlyI | GAGTC | 1 cut(s) | 482 |
| MnlI | CCTC | 7 cut(s) | 65, 166, 169, 224, 277, 310, 314 |
| MroI | TCCGGA | 1 cut(s) | 476 |
| MroXI | GAANNNNTTC | 2 cut(s) | 82, 258 |
| MspA1I | CMGCKG | 1 cut(s) | 68 |
| MspI | CCGG | 1 cut(s) | 477 |
| MspR9I | CCNGG | 1 cut(s) | 245 |
| MvaI | CCWGG | 1 cut(s) | 245 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 333, 357, 491 |
| NdeII | GATC | 3 cut(s) | 23, 101, 238 |
| NlaIII | CATG | 6 cut(s) | 37, 129, 202, 223, 277, 304 |
| NlaIV | GGNNCC | 1 cut(s) | 103 |
| NmeAIII | GCCGAG | 1 cut(s) | 470 |
| NmuCI | GTSAC | 1 cut(s) | 110 |
| PdmI | GAANNNNTTC | 2 cut(s) | 82, 258 |
| PkrI | GCNGC | 4 cut(s) | 137, 329, 359, 484 |
| PleI | GAGTC | 1 cut(s) | 482 |
| PpsI | GAGTC | 1 cut(s) | 482 |
| Psp124BI | GAGCTC | 1 cut(s) | 393 |
| Psp6I | CCWGG | 1 cut(s) | 243 |
| PspFI | CCCAGC | 1 cut(s) | 351 |
| PspGI | CCWGG | 1 cut(s) | 243 |
| PspN4I | GGNNCC | 1 cut(s) | 103 |
| PstI | CTGCAG | 1 cut(s) | 140 |
| PsuI | RGATCY | 2 cut(s) | 23, 101 |
| PvuII | CAGCTG | 1 cut(s) | 68 |
| RsaI | GTAC | 2 cut(s) | 178, 184 |
| RsaNI | GTAC | 2 cut(s) | 177, 183 |
| SacI | GAGCTC | 1 cut(s) | 393 |
| SatI | GCNGC | 4 cut(s) | 136, 328, 358, 483 |
| Sau3AI | GATC | 3 cut(s) | 23, 101, 238 |
| ScaI | AGTACT | 2 cut(s) | 178, 184 |
| SchI | GAGTC | 1 cut(s) | 482 |
| ScrFI | CCNGG | 1 cut(s) | 245 |
| SduI | GDGCHC | 1 cut(s) | 393 |
| SetI | ASST | 6 cut(s) | 70, 325, 393, 436, 465, 484 |
| SfcI | CTRYAG | 1 cut(s) | 136 |
| SmlI | CTYRAG | 1 cut(s) | 386 |
| SmoI | CTYRAG | 1 cut(s) | 386 |
| SpeI | ACTAGT | 3 cut(s) | 80, 173, 179 |
| Sse9I | AATT | 2 cut(s) | 115, 471 |
| SsiI | CCGC | 2 cut(s) | 327, 357 |
| SspMI | CTAG | 3 cut(s) | 81, 174, 180 |
| SstI | GAGCTC | 1 cut(s) | 393 |
| StyD4I | CCNGG | 1 cut(s) | 243 |
| TaaI | ACNGT | 3 cut(s) | 267, 281, 368 |
| TasI | AATT | 2 cut(s) | 115, 471 |
| TatI | WGTACW | 2 cut(s) | 176, 182 |
| TauI | GCSGC | 2 cut(s) | 330, 360 |
| TscAI | CASTG | 2 cut(s) | 145, 270 |
| TseFI | GTSAC | 1 cut(s) | 110 |
| TseI | GCWGC | 2 cut(s) | 135, 482 |
| Tsp45I | GTSAC | 1 cut(s) | 110 |
| TspDTI | ATGAA | 5 cut(s) | 44, 208, 215, 219, 317 |
| TspRI | CASTG | 2 cut(s) | 145, 270 |
| XapI | RAATTY | 1 cut(s) | 471 |
| XmnI | GAANNNNTTC | 2 cut(s) | 82, 258 |
| XspI | CTAG | 3 cut(s) | 81, 174, 180 |
| ZrmI | AGTACT | 2 cut(s) | 178, 184 |