Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 185 |
| AclWI | GGATC | 1 cut(s) | 270 |
| AcyI | GRCGYC | 1 cut(s) | 182 |
| AfaI | GTAC | 1 cut(s) | 91 |
| AfeI | AGCGCT | 1 cut(s) | 64 |
| AluBI | AGCT | 1 cut(s) | 136 |
| AluI | AGCT | 1 cut(s) | 136 |
| AlwI | GGATC | 1 cut(s) | 270 |
| Ama87I | CYCGRG | 1 cut(s) | 162 |
| Aor51HI | AGCGCT | 1 cut(s) | 64 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| AspLEI | GCGC | 1 cut(s) | 65 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 1 cut(s) | 242 |
| AvaI | CYCGRG | 1 cut(s) | 162 |
| BanII | GRGCYC | 1 cut(s) | 163 |
| BbsI | GAAGAC | 1 cut(s) | 185 |
| BbvI | GCAGC | 1 cut(s) | 62 |
| BccI | CCATC | 1 cut(s) | 26 |
| BceAI | ACGGC | 1 cut(s) | 72 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BfaI | CTAG | 1 cut(s) | 93 |
| BfmI | CTRYAG | 1 cut(s) | 108 |
| BfoI | RGCGCY | 1 cut(s) | 66 |
| BisI | GCNGC | 1 cut(s) | 51 |
| BlsI | GCNGC | 1 cut(s) | 52 |
| Bme1390I | CCNGG | 1 cut(s) | 55 |
| BmeT110I | CYCGRG | 1 cut(s) | 162 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 55 |
| BpiI | GAAGAC | 1 cut(s) | 185 |
| BpuEI | CTTGAG | 1 cut(s) | 113 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaHI | GRCGYC | 1 cut(s) | 182 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 189 |
| BseDI | CCNNGG | 2 cut(s) | 27, 189 |
| BseGI | GGATG | 2 cut(s) | 19, 37 |
| BseXI | GCAGC | 1 cut(s) | 62 |
| BsiHKCI | CYCGRG | 1 cut(s) | 162 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BsoBI | CYCGRG | 1 cut(s) | 162 |
| Bsp1286I | GDGCHC | 1 cut(s) | 163 |
| Bsp143I | GATC | 3 cut(s) | 112, 215, 262 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 270 |
| BssECI | CCNNGG | 2 cut(s) | 27, 189 |
| BssMI | GATC | 3 cut(s) | 112, 215, 262 |
| BssNI | GRCGYC | 1 cut(s) | 182 |
| BstACI | GRCGYC | 1 cut(s) | 182 |
| BstF5I | GGATG | 2 cut(s) | 19, 37 |
| BstH2I | RGCGCY | 1 cut(s) | 66 |
| BstHHI | GCGC | 1 cut(s) | 65 |
| BstKTI | GATC | 3 cut(s) | 115, 218, 265 |
| BstMBI | GATC | 3 cut(s) | 112, 215, 262 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 84 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 1 cut(s) | 53 |
| BstSFI | CTRYAG | 1 cut(s) | 108 |
| BstV1I | GCAGC | 1 cut(s) | 62 |
| BstV2I | GAAGAC | 1 cut(s) | 185 |
| BtsCI | GGATG | 2 cut(s) | 19, 37 |
| CfoI | GCGC | 1 cut(s) | 65 |
| Csp6I | GTAC | 1 cut(s) | 90 |
| CviAII | CATG | 4 cut(s) | 70, 200, 208, 257 |
| CviJI | RGCY | 5 cut(s) | 53, 87, 136, 161, 223 |
| CviKI_1 | RGCY | 5 cut(s) | 53, 87, 136, 161, 223 |
| CviQI | GTAC | 1 cut(s) | 90 |
| DpnI | GATC | 3 cut(s) | 114, 217, 264 |
| DpnII | GATC | 3 cut(s) | 112, 215, 262 |
| Eco24I | GRGCYC | 1 cut(s) | 163 |
| Eco47III | AGCGCT | 1 cut(s) | 64 |
| Eco88I | CYCGRG | 1 cut(s) | 162 |
| EcoT38I | GRGCYC | 1 cut(s) | 163 |
| FaeI | CATG | 4 cut(s) | 73, 203, 211, 260 |
| FaiI | YATR | 7 cut(s) | 71, 117, 119, 201, 209, 258, 270 |
| FatI | CATG | 4 cut(s) | 69, 199, 207, 256 |
| Fnu4HI | GCNGC | 1 cut(s) | 51 |
| FokI | GGATG | 2 cut(s) | 6, 44 |
| FriOI | GRGCYC | 1 cut(s) | 163 |
| Fsp4HI | GCNGC | 1 cut(s) | 51 |
| FspBI | CTAG | 1 cut(s) | 93 |
| GlaI | GCGC | 1 cut(s) | 64 |
| GluI | GCNGC | 1 cut(s) | 51 |
| HaeII | RGCGCY | 1 cut(s) | 66 |
| HapII | CCGG | 1 cut(s) | 54 |
| HhaI | GCGC | 1 cut(s) | 65 |
| Hin1I | GRCGYC | 1 cut(s) | 182 |
| Hin1II | CATG | 4 cut(s) | 73, 203, 211, 260 |
| Hin6I | GCGC | 1 cut(s) | 63 |
| HinP1I | GCGC | 1 cut(s) | 63 |
| HinfI | GANTC | 2 cut(s) | 100, 123 |
| HpaII | CCGG | 1 cut(s) | 54 |
| HphI | GGTGA | 1 cut(s) | 242 |
| Hpy166II | GTNNAC | 1 cut(s) | 186 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| Hpy188III | TCNNGA | 1 cut(s) | 164 |
| Hpy8I | GTNNAC | 1 cut(s) | 186 |
| HpyCH4IV | ACGT | 1 cut(s) | 182 |
| HpyCH4V | TGCA | 1 cut(s) | 211 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 84 |
| HpySE526I | ACGT | 1 cut(s) | 182 |
| Hsp92I | GRCGYC | 1 cut(s) | 182 |
| Hsp92II | CATG | 4 cut(s) | 73, 203, 211, 260 |
| HspAI | GCGC | 1 cut(s) | 63 |
| Kzo9I | GATC | 3 cut(s) | 112, 215, 262 |
| LmnI | GCTCC | 1 cut(s) | 133 |
| LpnPI | CCDG | 3 cut(s) | 64, 67, 204 |
| Lsp1109I | GCAGC | 1 cut(s) | 62 |
| MaeI | CTAG | 1 cut(s) | 93 |
| MaeII | ACGT | 1 cut(s) | 182 |
| MaeIII | GTNAC | 2 cut(s) | 41, 241 |
| MalI | GATC | 3 cut(s) | 114, 217, 264 |
| MboI | GATC | 3 cut(s) | 112, 215, 262 |
| MboII | GAAGA | 4 cut(s) | 181, 184, 187, 190 |
| MfeI | CAATTG | 1 cut(s) | 247 |
| MhlI | GDGCHC | 1 cut(s) | 163 |
| MluCI | AATT | 1 cut(s) | 247 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 4 cut(s) | 22, 137, 199, 253 |
| MseI | TTAA | 1 cut(s) | 273 |
| MspI | CCGG | 1 cut(s) | 54 |
| MspR9I | CCNGG | 1 cut(s) | 55 |
| MunI | CAATTG | 1 cut(s) | 247 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 84 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NdeII | GATC | 3 cut(s) | 112, 215, 262 |
| NlaIII | CATG | 4 cut(s) | 73, 203, 211, 260 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PfeI | GAWTC | 2 cut(s) | 100, 123 |
| PkrI | GCNGC | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| RsaI | GTAC | 1 cut(s) | 91 |
| RsaNI | GTAC | 1 cut(s) | 90 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| SatI | GCNGC | 1 cut(s) | 51 |
| Sau3AI | GATC | 3 cut(s) | 112, 215, 262 |
| ScrFI | CCNGG | 1 cut(s) | 55 |
| SduI | GDGCHC | 1 cut(s) | 163 |
| SetI | ASST | 4 cut(s) | 98, 138, 185, 191 |
| SfcI | CTRYAG | 1 cut(s) | 108 |
| SmlI | CTYRAG | 1 cut(s) | 128 |
| SmoI | CTYRAG | 1 cut(s) | 128 |
| Sse9I | AATT | 1 cut(s) | 247 |
| SspMI | CTAG | 1 cut(s) | 93 |
| StyD4I | CCNGG | 1 cut(s) | 53 |
| TaiI | ACGT | 1 cut(s) | 185 |
| TasI | AATT | 1 cut(s) | 247 |
| TfiI | GAWTC | 2 cut(s) | 100, 123 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TseI | GCWGC | 1 cut(s) | 50 |
| TspDTI | ATGAA | 1 cut(s) | 188 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XspI | CTAG | 1 cut(s) | 93 |
| ZraI | GACGTC | 1 cut(s) | 183 |