Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 379 |
| AccII | CGCG | 1 cut(s) | 75 |
| AciI | CCGC | 7 cut(s) | 7, 73, 371, 377, 405, 415, 418 |
| AclWI | GGATC | 5 cut(s) | 165, 178, 207, 370, 451 |
| AcoI | YGGCCR | 1 cut(s) | 194 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 13, 76, 79, 155, 203, 487 |
| AgsI | TTSAA | 2 cut(s) | 94, 464 |
| AluBI | AGCT | 2 cut(s) | 50, 102 |
| AluI | AGCT | 2 cut(s) | 50, 102 |
| AlwI | GGATC | 5 cut(s) | 165, 178, 207, 370, 451 |
| Ama87I | CYCGRG | 2 cut(s) | 244, 338 |
| AoxI | GGCC | 5 cut(s) | 4, 33, 109, 124, 194 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 468 |
| AspS9I | GGNCC | 4 cut(s) | 4, 145, 265, 343 |
| AsuHPI | GGTGA | 1 cut(s) | 323 |
| AvaI | CYCGRG | 2 cut(s) | 244, 338 |
| AvaII | GGWCC | 3 cut(s) | 145, 265, 343 |
| BaeGI | GKGCMC | 1 cut(s) | 288 |
| BamHI | GGATCC | 1 cut(s) | 170 |
| BanII | GRGCYC | 1 cut(s) | 245 |
| BauI | CACGAG | 2 cut(s) | 18, 39 |
| BccI | CCATC | 1 cut(s) | 415 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 35, 69 |
| BfaI | CTAG | 1 cut(s) | 51 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 62 |
| BisI | GCNGC | 2 cut(s) | 7, 416 |
| BlsI | GCNGC | 2 cut(s) | 8, 417 |
| Bme18I | GGWCC | 3 cut(s) | 145, 265, 343 |
| BmeT110I | CYCGRG | 2 cut(s) | 244, 338 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 145, 265, 343 |
| BmiI | GGNNCC | 3 cut(s) | 147, 172, 336 |
| BmsI | GCATC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 2 cut(s) | 288, 339 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 13, 76, 79, 155, 203, 487 |
| Bse118I | RCCGGY | 1 cut(s) | 392 |
| BseDI | CCNNGG | 2 cut(s) | 288, 339 |
| BseGI | GGATG | 2 cut(s) | 373, 426 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 13, 76, 79, 155, 203, 487 |
| BseRI | GAGGAG | 1 cut(s) | 119 |
| BseSI | GKGCMC | 1 cut(s) | 288 |
| Bsh1236I | CGCG | 1 cut(s) | 75 |
| BshFI | GGCC | 5 cut(s) | 6, 35, 111, 126, 196 |
| BsiHKCI | CYCGRG | 2 cut(s) | 244, 338 |
| BsiSI | CCGG | 2 cut(s) | 197, 393 |
| BslFI | GGGAC | 1 cut(s) | 131 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 13, 76, 79, 155, 203, 487 |
| BsmFI | GGGAC | 1 cut(s) | 131 |
| BsnI | GGCC | 5 cut(s) | 6, 35, 111, 126, 196 |
| BsoBI | CYCGRG | 2 cut(s) | 244, 338 |
| Bsp1286I | GDGCHC | 2 cut(s) | 245, 288 |
| Bsp143I | GATC | 5 cut(s) | 170, 199, 296, 362, 443 |
| Bsp19I | CCATGG | 1 cut(s) | 288 |
| BspACI | CCGC | 7 cut(s) | 7, 73, 371, 377, 405, 415, 418 |
| BspANI | GGCC | 5 cut(s) | 6, 35, 111, 126, 196 |
| BspFNI | CGCG | 1 cut(s) | 75 |
| BspLI | GGNNCC | 3 cut(s) | 147, 172, 336 |
| BspPI | GGATC | 5 cut(s) | 165, 178, 207, 370, 451 |
| BsrBI | CCGCTC | 1 cut(s) | 379 |
| BsrFI | RCCGGY | 1 cut(s) | 392 |
| BssAI | RCCGGY | 1 cut(s) | 392 |
| BssECI | CCNNGG | 2 cut(s) | 288, 339 |
| BssMI | GATC | 5 cut(s) | 170, 199, 296, 362, 443 |
| BssSI | CACGAG | 2 cut(s) | 18, 39 |
| BssT1I | CCWWGG | 1 cut(s) | 288 |
| Bst2BI | CACGAG | 2 cut(s) | 18, 39 |
| Bst4CI | ACNGT | 1 cut(s) | 140 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstC8I | GCNNGC | 2 cut(s) | 109, 381 |
| BstDSI | CCRYGG | 1 cut(s) | 288 |
| BstF5I | GGATG | 2 cut(s) | 373, 426 |
| BstFNI | CGCG | 1 cut(s) | 75 |
| BstKTI | GATC | 5 cut(s) | 173, 202, 299, 365, 446 |
| BstMBI | GATC | 5 cut(s) | 170, 199, 296, 362, 443 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 41, 62, 108, 389 |
| BstSLI | GKGCMC | 1 cut(s) | 288 |
| BstUI | CGCG | 1 cut(s) | 75 |
| BstX2I | RGATCY | 3 cut(s) | 170, 362, 443 |
| BstYI | RGATCY | 3 cut(s) | 170, 362, 443 |
| BsuRI | GGCC | 5 cut(s) | 6, 35, 111, 126, 196 |
| BtgI | CCRYGG | 1 cut(s) | 288 |
| BtsCI | GGATG | 2 cut(s) | 373, 426 |
| Cac8I | GCNNGC | 2 cut(s) | 109, 381 |
| Cfr10I | RCCGGY | 1 cut(s) | 392 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 145, 265, 343 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 169, 204 |
| CviAII | CATG | 5 cut(s) | 281, 289, 483, 487, 498 |
| DpnI | GATC | 5 cut(s) | 172, 201, 298, 364, 445 |
| DpnII | GATC | 5 cut(s) | 170, 199, 296, 362, 443 |
| EaeI | YGGCCR | 1 cut(s) | 194 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| EciI | GGCGGA | 1 cut(s) | 433 |
| Eco130I | CCWWGG | 1 cut(s) | 288 |
| Eco147I | AGGCCT | 1 cut(s) | 126 |
| Eco24I | GRGCYC | 1 cut(s) | 245 |
| Eco47I | GGWCC | 3 cut(s) | 145, 265, 343 |
| Eco88I | CYCGRG | 2 cut(s) | 244, 338 |
| EcoT14I | CCWWGG | 1 cut(s) | 288 |
| EcoT22I | ATGCAT | 1 cut(s) | 488 |
| EcoT38I | GRGCYC | 1 cut(s) | 245 |
| ErhI | CCWWGG | 1 cut(s) | 288 |
| FaeI | CATG | 5 cut(s) | 284, 292, 486, 490, 501 |
| FaqI | GGGAC | 1 cut(s) | 131 |
| FatI | CATG | 5 cut(s) | 280, 288, 482, 486, 497 |
| Fnu4HI | GCNGC | 2 cut(s) | 7, 416 |
| FokI | GGATG | 2 cut(s) | 360, 433 |
| FriOI | GRGCYC | 1 cut(s) | 245 |
| Fsp4HI | GCNGC | 2 cut(s) | 7, 416 |
| FspBI | CTAG | 1 cut(s) | 51 |
| GluI | GCNGC | 2 cut(s) | 7, 416 |
| HaeIII | GGCC | 5 cut(s) | 6, 35, 111, 126, 196 |
| HapII | CCGG | 2 cut(s) | 197, 393 |
| Hin1II | CATG | 5 cut(s) | 284, 292, 486, 490, 501 |
| HindIII | AAGCTT | 1 cut(s) | 100 |
| HinfI | GANTC | 1 cut(s) | 163 |
| HpaII | CCGG | 2 cut(s) | 197, 393 |
| HphI | GGTGA | 1 cut(s) | 323 |
| Hpy166II | GTNNAC | 2 cut(s) | 233, 268 |
| Hpy188I | TCNGA | 2 cut(s) | 26, 362 |
| Hpy188III | TCNNGA | 3 cut(s) | 209, 230, 246 |
| Hpy8I | GTNNAC | 2 cut(s) | 233, 268 |
| HpyAV | CCTTC | 1 cut(s) | 479 |
| HpyCH4III | ACNGT | 1 cut(s) | 140 |
| HpyCH4IV | ACGT | 1 cut(s) | 214 |
| HpyCH4V | TGCA | 1 cut(s) | 486 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 41, 62, 108, 389 |
| HpySE526I | ACGT | 1 cut(s) | 214 |
| Hsp92II | CATG | 5 cut(s) | 284, 292, 486, 490, 501 |
| Kzo9I | GATC | 5 cut(s) | 170, 199, 296, 362, 443 |
| LmnI | GCTCC | 1 cut(s) | 158 |
| LpnPI | CCDG | 6 cut(s) | 17, 93, 210, 359, 406, 439 |
| LweI | GCATC | 1 cut(s) | 382 |
| MaeI | CTAG | 1 cut(s) | 51 |
| MaeII | ACGT | 1 cut(s) | 214 |
| MaeIII | GTNAC | 1 cut(s) | 322 |
| MalI | GATC | 5 cut(s) | 172, 201, 298, 364, 445 |
| MbiI | CCGCTC | 1 cut(s) | 379 |
| MboI | GATC | 5 cut(s) | 170, 199, 296, 362, 443 |
| MboII | GAAGA | 4 cut(s) | 269, 272, 357, 464 |
| MfeI | CAATTG | 1 cut(s) | 328 |
| MflI | RGATCY | 3 cut(s) | 170, 362, 443 |
| MhlI | GDGCHC | 2 cut(s) | 245, 288 |
| MluCI | AATT | 2 cut(s) | 95, 328 |
| MmeI | TCCRAC | 1 cut(s) | 4 |
| Mph1103I | ATGCAT | 1 cut(s) | 488 |
| MroXI | GAANNNNTTC | 1 cut(s) | 468 |
| MseI | TTAA | 3 cut(s) | 98, 354, 411 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspI | CCGG | 2 cut(s) | 197, 393 |
| MunI | CAATTG | 1 cut(s) | 328 |
| MvnI | CGCG | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 41, 62, 108, 389 |
| NcoI | CCATGG | 1 cut(s) | 288 |
| NdeII | GATC | 5 cut(s) | 170, 199, 296, 362, 443 |
| NlaIII | CATG | 5 cut(s) | 284, 292, 486, 490, 501 |
| NlaIV | GGNNCC | 3 cut(s) | 147, 172, 336 |
| NsiI | ATGCAT | 1 cut(s) | 488 |
| PceI | AGGCCT | 1 cut(s) | 126 |
| PdmI | GAANNNNTTC | 1 cut(s) | 468 |
| PfeI | GAWTC | 1 cut(s) | 163 |
| PkrI | GCNGC | 2 cut(s) | 8, 417 |
| PspN4I | GGNNCC | 3 cut(s) | 147, 172, 336 |
| PspPI | GGNCC | 4 cut(s) | 4, 145, 265, 343 |
| PsuI | RGATCY | 3 cut(s) | 170, 362, 443 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SaqAI | TTAA | 3 cut(s) | 98, 354, 411 |
| SatI | GCNGC | 2 cut(s) | 7, 416 |
| Sau3AI | GATC | 5 cut(s) | 170, 199, 296, 362, 443 |
| Sau96I | GGNCC | 4 cut(s) | 4, 145, 265, 343 |
| SduI | GDGCHC | 2 cut(s) | 245, 288 |
| SetI | ASST | 6 cut(s) | 52, 72, 104, 208, 217, 267 |
| SfaNI | GCATC | 1 cut(s) | 382 |
| SinI | GGWCC | 3 cut(s) | 145, 265, 343 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| Sse9I | AATT | 2 cut(s) | 95, 328 |
| SseBI | AGGCCT | 1 cut(s) | 126 |
| SsiI | CCGC | 7 cut(s) | 7, 73, 371, 377, 405, 415, 418 |
| SspI | AATATT | 1 cut(s) | 352 |
| SspMI | CTAG | 1 cut(s) | 51 |
| StuI | AGGCCT | 1 cut(s) | 126 |
| StyI | CCWWGG | 1 cut(s) | 288 |
| TaaI | ACNGT | 1 cut(s) | 140 |
| TaiI | ACGT | 1 cut(s) | 217 |
| TaqI | TCGA | 4 cut(s) | 132, 166, 202, 273 |
| TasI | AATT | 2 cut(s) | 95, 328 |
| TauI | GCSGC | 2 cut(s) | 9, 418 |
| TfiI | GAWTC | 1 cut(s) | 163 |
| Tru1I | TTAA | 3 cut(s) | 98, 354, 411 |
| Tru9I | TTAA | 3 cut(s) | 98, 354, 411 |
| TspDTI | ATGAA | 2 cut(s) | 269, 464 |
| TspGWI | ACGGA | 1 cut(s) | 163 |
| VpaK11BI | GGWCC | 3 cut(s) | 145, 265, 343 |
| XmnI | GAANNNNTTC | 1 cut(s) | 468 |
| XspI | CTAG | 1 cut(s) | 51 |
| Zsp2I | ATGCAT | 1 cut(s) | 488 |