Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000295.1

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

153065 .. 153757

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000295.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgcaaccacaaactcggcaaccaaccgaggatggaggaagcaacaaagcagtcaggagtagtactaacatgttttgcaggaggagtggtactaggtggaatccccctacagatcaaataagaatccttaaggagctttactacaacaagggagttaggtccccaactgcagaggagattgcgaggatctgtcttcagctgagacggtacgggaatatcgagggcaagaacgtcttttattggttccagaaccttaaggctcgggagaggcagaagaagaggtttgtttcggatgttcatgtgcccatgcaaagctcagggcttgttggtaatggtaatggtaccaattggaaacctgaggatcagtatattaacttcggatcttctgcatctgcttctgcttcttcagctggtgtgattgcttttaacgagcatatggggaactatggtggttatggctctgtgaccatggagattgaaacccttcctctgttccccatgcacggtgaggacatctttggcaacatgaagactacttccgagggaggtggcggctactactactactctgatggatggggcggctacaatggtggctctcacatttcccttgagcttagcctcaactcttacggctcggccctattttccctcgaaggtgttttctctgtgagagaagagacagagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

230

Amino Acids

25.58

Weight (kDa)

6.91

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AciI	CCGC	2 cut(s)	552, 582
AclWI	GGATC	3 cut(s)	194, 369, 388
AcuI	CTGAAG	2 cut(s)	179, 390
AfaI	GTAC	4 cut(s)	64, 91, 209, 343
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflII	CTTAAG	2 cut(s)	128, 254
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	479
AluBI	AGCT	6 cut(s)	136, 199, 315, 410, 616, 688
AluI	AGCT	6 cut(s)	136, 199, 315, 410, 616, 688
Alw26I	GTCTC	2 cut(s)	196, 674
AlwI	GGATC	3 cut(s)	194, 369, 388
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	483
Asp718I	GGTACC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	159, 640
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BbsI	GAAGAC	2 cut(s)	185, 536
BccI	CCATC	3 cut(s)	26, 566, 570
BceAI	ACGGC	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	196, 674
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	2 cut(s)	108, 168
BfrI	CTTAAG	2 cut(s)	128, 254
BisI	GCNGC	2 cut(s)	553, 583
BlpI	GCTNAGC	1 cut(s)	617
BlsI	GCNGC	2 cut(s)	554, 584
BmcAI	AGTACT	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	159, 640
BmiI	GGNNCC	3 cut(s)	161, 245, 343
BmsI	GCATC	1 cut(s)	398
BpiI	GAAGAC	2 cut(s)	185, 536
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	632
BsaJI	CCNNGG	3 cut(s)	27, 468, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	27, 468, 540
BseGI	GGATG	3 cut(s)	37, 298, 581
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	3 cut(s)	191, 330, 348
BseRI	GAGGAG	2 cut(s)	97, 188
BseSI	GKGCMC	1 cut(s)	306
BshFI	GGCC	1 cut(s)	641
BshNI	GGYRCC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	2 cut(s)	196, 674
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	112, 186, 361, 380
Bsp1720I	GCTNAGC	1 cut(s)	617
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	2 cut(s)	552, 582
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	3 cut(s)	192, 329, 349
BspLI	GGNNCC	3 cut(s)	161, 245, 343
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	3 cut(s)	194, 369, 388
BspT107I	GGYRCC	1 cut(s)	341
BspTI	CTTAAG	2 cut(s)	128, 254
BssECI	CCNNGG	3 cut(s)	27, 468, 540
BssMI	GATC	4 cut(s)	112, 186, 361, 380
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	207, 506
Bst6I	CTCTTC	2 cut(s)	272, 672
BstAFI	CTTAAG	2 cut(s)	128, 254
BstDEI	CTNAG	4 cut(s)	200, 316, 357, 617
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	37, 298, 581
BstKTI	GATC	4 cut(s)	115, 189, 364, 383
BstMAI	GTCTC	2 cut(s)	196, 674
BstMBI	GATC	4 cut(s)	112, 186, 361, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	73
BstSFI	CTRYAG	2 cut(s)	108, 168
BstSLI	GKGCMC	1 cut(s)	306
BstV2I	GAAGAC	2 cut(s)	185, 536
BstX2I	RGATCY	2 cut(s)	186, 380
BstYI	RGATCY	2 cut(s)	186, 380
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	37, 298, 581
Cfr13I	GGNCC	2 cut(s)	159, 640
Csp6I	GTAC	4 cut(s)	63, 90, 208, 342
CviAII	CATG	6 cut(s)	70, 299, 307, 469, 499, 526
CviQI	GTAC	4 cut(s)	63, 90, 208, 342
DdeI	CTNAG	4 cut(s)	200, 316, 357, 617
DpnI	GATC	4 cut(s)	114, 188, 363, 382
DpnII	GATC	4 cut(s)	112, 186, 361, 380
Eam1104I	CTCTTC	2 cut(s)	272, 672
EarI	CTCTTC	2 cut(s)	272, 672
Eco130I	CCWWGG	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	179, 390
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	6 cut(s)	73, 302, 310, 472, 502, 529
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	6 cut(s)	69, 298, 306, 468, 498, 525
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	553, 583
FokI	GGATG	3 cut(s)	44, 305, 588
Fsp4HI	GCNGC	2 cut(s)	553, 583
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	2 cut(s)	553, 583
HaeIII	GGCC	1 cut(s)	641
Hin1II	CATG	6 cut(s)	73, 302, 310, 472, 502, 529
HinfI	GANTC	2 cut(s)	100, 123
HphI	GGTGA	1 cut(s)	518
Hpy188I	TCNGA	4 cut(s)	292, 380, 541, 571
Hpy188III	TCNNGA	3 cut(s)	55, 247, 263
HpyAV	CCTTC	2 cut(s)	494, 650
HpyCH4III	ACNGT	2 cut(s)	207, 506
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	4, 78, 170, 310, 389, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	4 cut(s)	200, 316, 357, 617
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	73, 302, 310, 472, 502, 529
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	112, 186, 361, 380
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	40, 64, 260, 303, 369, 396
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	4 cut(s)	114, 188, 363, 382
MboI	GATC	4 cut(s)	112, 186, 361, 380
MboII	GAAGA	7 cut(s)	185, 286, 289, 375, 396, 541, 689
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	2 cut(s)	186, 380
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	4 cut(s)	129, 255, 372, 426
MspA1I	CMGCKG	2 cut(s)	199, 410
MspCI	CTTAAG	2 cut(s)	128, 254
MunI	CAATTG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	468
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	4 cut(s)	112, 186, 361, 380
NlaIII	CATG	6 cut(s)	73, 302, 310, 472, 502, 529
NlaIV	GGNNCC	3 cut(s)	161, 245, 343
NmeAIII	GCCGAG	1 cut(s)	617
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	1 cut(s)	73
PciI	ACATGT	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	100, 123
PkrI	GCNGC	2 cut(s)	554, 584
PpuMI	RGGWCCY	1 cut(s)	159
PscI	ACATGT	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	161, 245, 343
PspPI	GGNCC	2 cut(s)	159, 640
PspPPI	RGGWCCY	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	186, 380
PvuII	CAGCTG	2 cut(s)	199, 410
RsaI	GTAC	4 cut(s)	64, 91, 209, 343
RsaNI	GTAC	4 cut(s)	63, 90, 208, 342
SaqAI	TTAA	4 cut(s)	129, 255, 372, 426
SatI	GCNGC	2 cut(s)	553, 583
Sau3AI	GATC	4 cut(s)	112, 186, 361, 380
Sau96I	GGNCC	2 cut(s)	159, 640
ScaI	AGTACT	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	398
SfcI	CTRYAG	2 cut(s)	108, 168
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	3 cut(s)	128, 254, 611
SmoI	CTYRAG	3 cut(s)	128, 254, 611
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	552, 582
SspMI	CTAG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	207, 506
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	219, 654
TasI	AATT	1 cut(s)	346
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	2 cut(s)	555, 585
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	4 cut(s)	129, 255, 372, 426
Tru9I	TTAA	4 cut(s)	129, 255, 372, 426
TseFI	GTSAC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	287, 542
Vha464I	CTTAAG	2 cut(s)	128, 254
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.