Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DnaJ | PF00226 | 6 - 73 | 2.9e-16 | DnaJ domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 24 |
| AccI | GTMKAC | 1 cut(s) | 37 |
| AciI | CCGC | 1 cut(s) | 288 |
| AclWI | GGATC | 2 cut(s) | 131, 201 |
| AcoI | YGGCCR | 1 cut(s) | 496 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 361, 372 |
| AgsI | TTSAA | 1 cut(s) | 84 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 140, 172, 429, 461, 514, 546 |
| AluBI | AGCT | 5 cut(s) | 64, 340, 344, 416, 610 |
| AluI | AGCT | 5 cut(s) | 64, 340, 344, 416, 610 |
| AlwI | GGATC | 2 cut(s) | 131, 201 |
| AoxI | GGCC | 3 cut(s) | 128, 363, 496 |
| ApeKI | GCWGC | 5 cut(s) | 416, 478, 481, 484, 610 |
| AspS9I | GGNCC | 2 cut(s) | 363, 428 |
| AsuC2I | CCSGG | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 2 cut(s) | 326, 461 |
| AsuNHI | GCTAGC | 1 cut(s) | 340 |
| AvaII | GGWCC | 1 cut(s) | 428 |
| BanII | GRGCYC | 1 cut(s) | 385 |
| BbsI | GAAGAC | 1 cut(s) | 415 |
| BbvI | GCAGC | 5 cut(s) | 403, 490, 493, 496, 597 |
| BccI | CCATC | 2 cut(s) | 311, 372 |
| BceAI | ACGGC | 1 cut(s) | 511 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 125, 159 |
| BcnI | CCSGG | 1 cut(s) | 205 |
| BfaI | CTAG | 2 cut(s) | 341, 432 |
| BisI | GCNGC | 6 cut(s) | 288, 417, 479, 482, 485, 611 |
| BlsI | GCNGC | 6 cut(s) | 289, 418, 480, 483, 486, 612 |
| Bme1390I | CCNGG | 1 cut(s) | 205 |
| Bme18I | GGWCC | 1 cut(s) | 428 |
| BmgT120I | GGNCC | 2 cut(s) | 363, 428 |
| BmiI | GGNNCC | 1 cut(s) | 384 |
| BmrFI | CCNGG | 1 cut(s) | 205 |
| BmsI | GCATC | 4 cut(s) | 208, 259, 502, 573 |
| BmtI | GCTAGC | 1 cut(s) | 344 |
| BpiI | GAAGAC | 1 cut(s) | 415 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 367, 399 |
| BpuEI | CTTGAG | 3 cut(s) | 152, 173, 590 |
| BpuMI | CCSGG | 1 cut(s) | 205 |
| BsaWI | WCCGGW | 1 cut(s) | 311 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 361, 372 |
| Bse1I | ACTGG | 1 cut(s) | 499 |
| Bse3DI | GCAATG | 1 cut(s) | 512 |
| BseGI | GGATG | 1 cut(s) | 309 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 361, 372 |
| BseMI | GCAATG | 1 cut(s) | 512 |
| BseNI | ACTGG | 1 cut(s) | 499 |
| BseRI | GAGGAG | 1 cut(s) | 593 |
| BseXI | GCAGC | 5 cut(s) | 403, 490, 493, 496, 597 |
| BsgI | GTGCAG | 1 cut(s) | 497 |
| BshFI | GGCC | 3 cut(s) | 130, 365, 498 |
| BsiSI | CCGG | 2 cut(s) | 205, 312 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 361, 372 |
| BsnI | GGCC | 3 cut(s) | 130, 365, 498 |
| Bsp1286I | GDGCHC | 1 cut(s) | 385 |
| Bsp143I | GATC | 5 cut(s) | 16, 136, 193, 349, 558 |
| BspACI | CCGC | 1 cut(s) | 288 |
| BspANI | GGCC | 3 cut(s) | 130, 365, 498 |
| BspLI | GGNNCC | 1 cut(s) | 384 |
| BspOI | GCTAGC | 1 cut(s) | 344 |
| BspPI | GGATC | 2 cut(s) | 131, 201 |
| BsrDI | GCAATG | 1 cut(s) | 512 |
| BsrI | ACTGG | 1 cut(s) | 499 |
| BssMI | GATC | 5 cut(s) | 16, 136, 193, 349, 558 |
| Bst4CI | ACNGT | 2 cut(s) | 42, 213 |
| Bst6I | CTCTTC | 1 cut(s) | 432 |
| BstC8I | GCNNGC | 2 cut(s) | 266, 342 |
| BstDEI | CTNAG | 3 cut(s) | 60, 227, 587 |
| BstF5I | GGATG | 1 cut(s) | 309 |
| BstKTI | GATC | 5 cut(s) | 19, 139, 196, 352, 561 |
| BstMBI | GATC | 5 cut(s) | 16, 136, 193, 349, 558 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 95, 341, 484 |
| BstSCI | CCNGG | 1 cut(s) | 203 |
| BstV1I | GCAGC | 5 cut(s) | 403, 490, 493, 496, 597 |
| BstV2I | GAAGAC | 1 cut(s) | 415 |
| BsuRI | GGCC | 3 cut(s) | 130, 365, 498 |
| BtgZI | GCGATG | 1 cut(s) | 525 |
| BtsCI | GGATG | 1 cut(s) | 309 |
| BtsIMutI | CAGTG | 1 cut(s) | 506 |
| Cac8I | GCNNGC | 2 cut(s) | 266, 342 |
| Cfr13I | GGNCC | 2 cut(s) | 363, 428 |
| CviAII | CATG | 3 cut(s) | 143, 269, 390 |
| DdeI | CTNAG | 3 cut(s) | 60, 227, 587 |
| DpnI | GATC | 5 cut(s) | 18, 138, 195, 351, 560 |
| DpnII | GATC | 5 cut(s) | 16, 136, 193, 349, 558 |
| EaeI | YGGCCR | 1 cut(s) | 496 |
| Eam1104I | CTCTTC | 1 cut(s) | 432 |
| EarI | CTCTTC | 1 cut(s) | 432 |
| Eco24I | GRGCYC | 1 cut(s) | 385 |
| Eco47I | GGWCC | 1 cut(s) | 428 |
| EcoT38I | GRGCYC | 1 cut(s) | 385 |
| FaeI | CATG | 3 cut(s) | 146, 272, 393 |
| FatI | CATG | 3 cut(s) | 142, 268, 389 |
| FauNDI | CATATG | 1 cut(s) | 178 |
| FblI | GTMKAC | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 6 cut(s) | 288, 417, 479, 482, 485, 611 |
| FokI | GGATG | 1 cut(s) | 316 |
| FriOI | GRGCYC | 1 cut(s) | 385 |
| Fsp4HI | GCNGC | 6 cut(s) | 288, 417, 479, 482, 485, 611 |
| FspBI | CTAG | 2 cut(s) | 341, 432 |
| GluI | GCNGC | 6 cut(s) | 288, 417, 479, 482, 485, 611 |
| HaeIII | GGCC | 3 cut(s) | 130, 365, 498 |
| HapII | CCGG | 2 cut(s) | 205, 312 |
| Hin1II | CATG | 3 cut(s) | 146, 272, 393 |
| HinfI | GANTC | 2 cut(s) | 259, 619 |
| HpaII | CCGG | 2 cut(s) | 205, 312 |
| HphI | GGTGA | 2 cut(s) | 326, 461 |
| Hpy166II | GTNNAC | 1 cut(s) | 38 |
| Hpy188I | TCNGA | 3 cut(s) | 258, 349, 618 |
| Hpy8I | GTNNAC | 1 cut(s) | 38 |
| HpyAV | CCTTC | 3 cut(s) | 47, 294, 452 |
| HpyCH4III | ACNGT | 2 cut(s) | 42, 213 |
| HpyCH4V | TGCA | 7 cut(s) | 115, 152, 221, 250, 268, 478, 515 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 95, 341, 484 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 227, 587 |
| Hsp92II | CATG | 3 cut(s) | 146, 272, 393 |
| Kzo9I | GATC | 5 cut(s) | 16, 136, 193, 349, 558 |
| LmnI | GCTCC | 1 cut(s) | 388 |
| Lsp1109I | GCAGC | 5 cut(s) | 403, 490, 493, 496, 597 |
| LweI | GCATC | 4 cut(s) | 208, 259, 502, 573 |
| MaeI | CTAG | 2 cut(s) | 341, 432 |
| MaeIII | GTNAC | 1 cut(s) | 329 |
| MalI | GATC | 5 cut(s) | 18, 138, 195, 351, 560 |
| MboI | GATC | 5 cut(s) | 16, 136, 193, 349, 558 |
| MboII | GAAGA | 5 cut(s) | 254, 420, 449, 546, 622 |
| MhlI | GDGCHC | 1 cut(s) | 385 |
| MnlI | CCTC | 8 cut(s) | 43, 120, 231, 354, 398, 519, 571, 584 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 282 |
| MspI | CCGG | 2 cut(s) | 205, 312 |
| MspR9I | CCNGG | 1 cut(s) | 205 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 95, 341, 484 |
| NciI | CCSGG | 1 cut(s) | 205 |
| NdeI | CATATG | 1 cut(s) | 178 |
| NdeII | GATC | 5 cut(s) | 16, 136, 193, 349, 558 |
| NheI | GCTAGC | 1 cut(s) | 340 |
| NlaIII | CATG | 3 cut(s) | 146, 272, 393 |
| NlaIV | GGNNCC | 1 cut(s) | 384 |
| NmuCI | GTSAC | 1 cut(s) | 329 |
| PfeI | GAWTC | 2 cut(s) | 259, 619 |
| PflFI | GACNNNGTC | 1 cut(s) | 327 |
| PkrI | GCNGC | 6 cut(s) | 289, 418, 480, 483, 486, 612 |
| PsiI | TTATAA | 1 cut(s) | 24 |
| PspN4I | GGNNCC | 1 cut(s) | 384 |
| PspPI | GGNCC | 2 cut(s) | 363, 428 |
| PsyI | GACNNNGTC | 1 cut(s) | 327 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 282 |
| SatI | GCNGC | 6 cut(s) | 288, 417, 479, 482, 485, 611 |
| Sau3AI | GATC | 5 cut(s) | 16, 136, 193, 349, 558 |
| Sau96I | GGNCC | 2 cut(s) | 363, 428 |
| ScrFI | CCNGG | 1 cut(s) | 205 |
| SduI | GDGCHC | 1 cut(s) | 385 |
| SetI | ASST | 7 cut(s) | 30, 66, 342, 346, 418, 530, 612 |
| SfaNI | GCATC | 4 cut(s) | 208, 259, 502, 573 |
| SinI | GGWCC | 1 cut(s) | 428 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 282 |
| SmlI | CTYRAG | 3 cut(s) | 167, 188, 605 |
| SmoI | CTYRAG | 3 cut(s) | 167, 188, 605 |
| SsiI | CCGC | 1 cut(s) | 288 |
| SspMI | CTAG | 2 cut(s) | 341, 432 |
| StyD4I | CCNGG | 1 cut(s) | 203 |
| TaaI | ACNGT | 2 cut(s) | 42, 213 |
| TaqI | TCGA | 3 cut(s) | 196, 537, 557 |
| TauI | GCSGC | 1 cut(s) | 290 |
| TfiI | GAWTC | 2 cut(s) | 259, 619 |
| TscAI | CASTG | 1 cut(s) | 506 |
| TseFI | GTSAC | 1 cut(s) | 329 |
| TseI | GCWGC | 5 cut(s) | 416, 478, 481, 484, 610 |
| Tsp45I | GTSAC | 1 cut(s) | 329 |
| TspDTI | ATGAA | 1 cut(s) | 195 |
| TspGWI | ACGGA | 2 cut(s) | 85, 388 |
| TspRI | CASTG | 1 cut(s) | 506 |
| Tth111I | GACNNNGTC | 1 cut(s) | 327 |
| VpaK11BI | GGWCC | 1 cut(s) | 428 |
| XmiI | GTMKAC | 1 cut(s) | 37 |
| XspI | CTAG | 2 cut(s) | 341, 432 |