Rmu_sc0002542.1_g000017

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002542.1
Physical Location & Seq
Reverse (-)
80839 .. 82150
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002542.1_g000017.1.cds

Sequence Viewer

Length: 789 bp
atggaaccacaaacccagcaatcaaccgaggatggaggaagcaacaaagcagccgggagtagtgctaacatgctttgcaggcagagcagtaccaggtggactcccactacagatcagataagaatcctcaaggagctttactacaacgagggagttaggtccccaactgtagaccagaagcagaagaagaagaggttcacttcggatgttcatgtgcccatgcaaagatcagggcttgttggtaatggtaatggtaccaattggaaacctgaggatcagtatattaacatgaacaacaagtactctaacatttgtcaaggggtttcttctgcatctgcttcttcagctggtgtgattgcttttaacaagcagatggggaattatggtggttatggatctatgaacatggagaagagttttagggattgttcaatctcagctggagggggaactagttccattggtgttggtggatccattagtcacaattttgggcaacacccatattcctcctcatcctacactactagtactagtactactttctttgacatgaatgaagaacaaactttcatggaacaacaaggagaagatcaccaggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttccgaaggaggtggcagctacggctactactccggtggctggggcggctacaacggtggcactcgcacttcccttgagctcagcctcaactcctacggctacaacaccaccaattactactga

Protein Analysis

262

Amino Acids

28.57

Weight (kDa)

5.55

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 171
AciI CCGC 1 cut(s) 711
AclWI GGATC 4 cut(s) 282, 403, 468, 481
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 5 cut(s) 91, 256, 302, 532, 538
AfiI CCNNNNNNNGG 2 cut(s) 632, 705
AgsI TTSAA 2 cut(s) 432, 608
AhlI ACTAGT 3 cut(s) 452, 527, 533
AjnI CCWGG 2 cut(s) 92, 597
AluBI AGCT 5 cut(s) 136, 347, 440, 684, 745
AluI AGCT 5 cut(s) 136, 347, 440, 684, 745
Alw21I GWGCWC 1 cut(s) 747
AlwI GGATC 4 cut(s) 282, 403, 468, 481
ApeKI GCWGC 2 cut(s) 50, 681
Asp700I GAANNNNTTC 3 cut(s) 194, 454, 612
Asp718I GGTACC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 587, 647
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 270
BaeGI GKGCMC 1 cut(s) 219
BamHI GGATCC 1 cut(s) 473
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 747
BbsI GAAGAC 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 62, 693
BccI CCATC 2 cut(s) 26, 367
BceAI ACGGC 2 cut(s) 703, 778
BciT130I CCWGG 2 cut(s) 94, 599
BcnI CCSGG 1 cut(s) 55
BcuI ACTAGT 3 cut(s) 452, 527, 533
BfaI CTAG 3 cut(s) 453, 528, 534
BfmI CTRYAG 2 cut(s) 108, 168
BisI GCNGC 3 cut(s) 51, 682, 712
BlpI GCTNAGC 1 cut(s) 746
BlsI GCNGC 3 cut(s) 52, 683, 713
BmcAI AGTACT 3 cut(s) 302, 532, 538
Bme1390I CCNGG 3 cut(s) 55, 94, 599
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 4 cut(s) 6, 161, 256, 475
BmrFI CCNGG 3 cut(s) 55, 94, 599
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 665
BpmI CTGGAG 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 746
BpuEI CTTGAG 2 cut(s) 113, 761
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 698
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 705
Bse21I CCTNAGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 2 cut(s) 94, 599
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 37, 211, 515
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 632, 705
BseMII CTCAG 3 cut(s) 261, 450, 760
BseRI GAGGAG 1 cut(s) 502
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 62, 693
BseYI CCCAGC 2 cut(s) 15, 705
BshNI GGYRCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 2 cut(s) 54, 699
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 632, 705
BsmFI GGGAC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 219, 747
Bsp143I GATC 6 cut(s) 112, 227, 274, 395, 473, 592
Bsp1720I GCTNAGC 1 cut(s) 746
BspACI CCGC 1 cut(s) 711
BspCNI CTCAG 3 cut(s) 262, 449, 759
BspLI GGNNCC 4 cut(s) 6, 161, 256, 475
BspPI GGATC 4 cut(s) 282, 403, 468, 481
BspT107I GGYRCC 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 6 cut(s) 112, 227, 274, 395, 473, 592
Bst2UI CCWGG 2 cut(s) 94, 599
Bst4CI ACNGT 2 cut(s) 169, 722
Bst6I CTCTTC 2 cut(s) 185, 407
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 270, 436, 746
BstF5I GGATG 3 cut(s) 37, 211, 515
BstKTI GATC 6 cut(s) 115, 230, 277, 398, 476, 595
BstMBI GATC 6 cut(s) 112, 227, 274, 395, 473, 592
BstMWI GCNNNNNNNGC 5 cut(s) 79, 84, 344, 687, 711
BstNI CCWGG 2 cut(s) 94, 599
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 53, 92, 597
BstSFI CTRYAG 2 cut(s) 108, 168
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 62, 693
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 2 cut(s) 395, 473
BstYI RGATCY 2 cut(s) 395, 473
Bsu36I CCTNAGG 1 cut(s) 270
BtsCI GGATG 3 cut(s) 37, 211, 515
Cac8I GCNNGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 5 cut(s) 90, 255, 301, 531, 537
CviQI GTAC 5 cut(s) 90, 255, 301, 531, 537
DdeI CTNAG 3 cut(s) 270, 436, 746
DpnI GATC 6 cut(s) 114, 229, 276, 397, 475, 594
DpnII GATC 6 cut(s) 112, 227, 274, 395, 473, 592
Eam1104I CTCTTC 2 cut(s) 185, 407
EarI CTCTTC 2 cut(s) 185, 407
Ecl136II GAGCTC 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 92, 597
EcoT22I ATGCAT 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 747
FaqI GGGAC 1 cut(s) 145
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 51, 682, 712
FokI GGATG 3 cut(s) 44, 218, 502
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 3 cut(s) 51, 682, 712
FspBI CTAG 3 cut(s) 453, 528, 534
GluI GCNGC 3 cut(s) 51, 682, 712
GsaI CCCAGC 2 cut(s) 19, 709
GsuI CTGGAG 1 cut(s) 462
HapII CCGG 2 cut(s) 54, 699
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 2 cut(s) 54, 699
HphI GGTGA 2 cut(s) 587, 647
Hpy166II GTNNAC 3 cut(s) 99, 172, 198
Hpy188I TCNGA 3 cut(s) 117, 205, 670
Hpy8I GTNNAC 3 cut(s) 99, 172, 198
HpyAV CCTTC 2 cut(s) 623, 665
HpyCH4III ACNGT 2 cut(s) 169, 722
HpyCH4V TGCA 4 cut(s) 78, 223, 332, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 84, 344, 687, 711
HpyF3I CTNAG 3 cut(s) 270, 436, 746
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 6 cut(s) 112, 227, 274, 395, 473, 592
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 2 cut(s) 62, 693
LweI GCATC 1 cut(s) 341
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 453, 528, 534
MaeIII GTNAC 1 cut(s) 482
MalI GATC 6 cut(s) 114, 229, 276, 397, 475, 594
MboI GATC 6 cut(s) 112, 227, 274, 395, 473, 592
MboII GAAGA 9 cut(s) 196, 199, 202, 318, 333, 424, 572, 602, 670
MfeI CAATTG 1 cut(s) 259
MflI RGATCY 2 cut(s) 395, 473
MhlI GDGCHC 2 cut(s) 219, 747
MluCI AATT 4 cut(s) 259, 379, 487, 778
MlyI GAGTC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 633
MroXI GAANNNNTTC 3 cut(s) 194, 454, 612
MseI TTAA 2 cut(s) 285, 363
MspA1I CMGCKG 2 cut(s) 347, 440
MspI CCGG 2 cut(s) 54, 699
MspR9I CCNGG 3 cut(s) 55, 94, 599
MunI CAATTG 1 cut(s) 259
MvaI CCWGG 2 cut(s) 94, 599
MwoI GCNNNNNNNGC 5 cut(s) 79, 84, 344, 687, 711
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 112, 227, 274, 395, 473, 592
NlaIV GGNNCC 4 cut(s) 6, 161, 256, 475
NmuCI GTSAC 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 633
NspI RCATGY 1 cut(s) 73
PdmI GAANNNNTTC 3 cut(s) 194, 454, 612
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 3 cut(s) 52, 683, 713
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 92, 597
PspFI CCCAGC 2 cut(s) 15, 705
PspGI CCWGG 2 cut(s) 92, 597
PspN4I GGNNCC 4 cut(s) 6, 161, 256, 475
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsrI GAACNNNNNNTAC 2 cut(s) 284, 316
PsuI RGATCY 2 cut(s) 395, 473
PvuII CAGCTG 2 cut(s) 347, 440
RsaI GTAC 5 cut(s) 91, 256, 302, 532, 538
RsaNI GTAC 5 cut(s) 90, 255, 301, 531, 537
SacI GAGCTC 1 cut(s) 747
SaqAI TTAA 2 cut(s) 285, 363
SatI GCNGC 3 cut(s) 51, 682, 712
Sau3AI GATC 6 cut(s) 112, 227, 274, 395, 473, 592
Sau96I GGNCC 1 cut(s) 159
ScaI AGTACT 3 cut(s) 302, 532, 538
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 3 cut(s) 55, 94, 599
SduI GDGCHC 2 cut(s) 219, 747
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 2 cut(s) 108, 168
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 128, 740
SmoI CTYRAG 2 cut(s) 128, 740
SpeI ACTAGT 3 cut(s) 452, 527, 533
Sse9I AATT 4 cut(s) 259, 379, 487, 778
SsiI CCGC 1 cut(s) 711
SspMI CTAG 3 cut(s) 453, 528, 534
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 53, 92, 597
TaaI ACNGT 2 cut(s) 169, 722
TasI AATT 4 cut(s) 259, 379, 487, 778
TatI WGTACW 3 cut(s) 300, 530, 536
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 285, 363
Tru9I TTAA 2 cut(s) 285, 363
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 2 cut(s) 50, 681
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 7 cut(s) 200, 305, 416, 562, 569, 573, 671
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 3 cut(s) 194, 454, 612
XspI CTAG 3 cut(s) 453, 528, 534
ZrmI AGTACT 3 cut(s) 302, 532, 538
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.