Rmu_sc0005697.1_g000023

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005697.1
Physical Location & Seq
Forward (+)
83829 .. 84539
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005697.1_g000023.1.cds

Sequence Viewer

Length: 711 bp
atggaactacaaacccagcaaccaaccgaggatggaggaagcaaccaagcagtcgggagtagtgctaacacgcctttctggcaaagtagtacccggtggactcccactccagatcagataagaatcctcaaggagctttactatgacaaggaggttaggtacccaactccagagcagattcaagagatctatctccatctgaaacagtatgggcagattgaggacaagaacgtctttttttggttccagaacctcaaagctcgagagaagcaaaagaagaggttaaatcggaacgttcgggtgcccatgggaactagctcttctagtgttggtggatccatcaatctcaatttttggtccactagttctactgatgctgatggatccatcgatctaaattttgggtcatgggtcggctatagtgttgactcatattcctcctcacccttcaacactaatactagtacttcctcctttggcacaaaaggaggacaaactttcatggaacaacgaggagaagatcaccaggagattgaaactcttcctctgttccccatgcacggtgaggacatccttggaaacctgaagtctacttccgagggaggtagcgcatatggctactattccggtggttcgggctgctacaacggtggctctcacatttctcttgagctcagcctcaacccttctggagctgctgacttggcttag

Protein Analysis

236

Amino Acids

26.06

Weight (kDa)

5.01

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 2 cut(s) 159, 301
AccI GTMKAC 1 cut(s) 590
AclI AACGTT 1 cut(s) 294
AclWI GGATC 4 cut(s) 330, 343, 378, 391
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 3 cut(s) 91, 161, 466
AfiI CCNNNNNNNGG 1 cut(s) 560
AgsI TTSAA 3 cut(s) 182, 451, 536
AhlI ACTAGT 2 cut(s) 362, 461
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 5 cut(s) 136, 260, 318, 673, 695
AluI AGCT 5 cut(s) 136, 260, 318, 673, 695
Alw21I GWGCWC 1 cut(s) 675
AlwI GGATC 4 cut(s) 330, 343, 378, 391
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 639, 695
ApoI RAATTY 1 cut(s) 397
Asp700I GAANNNNTTC 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 435, 515, 575
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 2 cut(s) 335, 383
BanI GGYRCC 2 cut(s) 159, 301
BanII GRGCYC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 675
BbvI GCAGC 2 cut(s) 626, 682
BccI CCATC 5 cut(s) 26, 204, 347, 374, 395
BciT130I CCWGG 1 cut(s) 527
BcnI CCSGG 1 cut(s) 94
BcuI ACTAGT 2 cut(s) 362, 461
BfaI CTAG 4 cut(s) 315, 324, 363, 462
BfmI CTRYAG 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 79
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 640, 696
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 2 cut(s) 641, 697
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 94, 527
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 5 cut(s) 161, 245, 303, 337, 385
BmrFI CCNGG 2 cut(s) 94, 527
BmsI GCATC 1 cut(s) 364
BpmI CTGGAG 3 cut(s) 93, 153, 711
Bpu1102I GCTNAGC 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 113, 689
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 4 cut(s) 27, 306, 574, 597
BsaWI WCCGGW 1 cut(s) 626
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 527
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 4 cut(s) 27, 306, 574, 597
BseGI GGATG 2 cut(s) 37, 570
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 560
BseMII CTCAG 1 cut(s) 688
BseRI GAGGAG 2 cut(s) 430, 528
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 2 cut(s) 626, 682
BseYI CCCAGC 1 cut(s) 15
BshNI GGYRCC 2 cut(s) 159, 301
BshVI ATCGAT 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 94, 627
BslI CCNNNNNNNGG 1 cut(s) 560
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 306, 675
Bsp143I GATC 6 cut(s) 112, 186, 335, 383, 391, 520
Bsp1720I GCTNAGC 1 cut(s) 674
Bsp19I CCATGG 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 687
BspDI ATCGAT 1 cut(s) 390
BspLI GGNNCC 5 cut(s) 161, 245, 303, 337, 385
BspPI GGATC 4 cut(s) 330, 343, 378, 391
BspQI GCTCTTC 1 cut(s) 325
BspT107I GGYRCC 2 cut(s) 159, 301
BssECI CCNNGG 4 cut(s) 27, 306, 574, 597
BssMI GATC 6 cut(s) 112, 186, 335, 383, 391, 520
BssT1I CCWWGG 2 cut(s) 306, 574
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 207, 563, 650
Bst6I CTCTTC 3 cut(s) 272, 325, 546
BstDEI CTNAG 2 cut(s) 674, 708
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 37, 570
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 6 cut(s) 115, 189, 338, 386, 394, 523
BstMBI GATC 6 cut(s) 112, 186, 335, 383, 391, 520
BstMWI GCNNNNNNNGC 3 cut(s) 79, 615, 704
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 92, 525
BstSFI CTRYAG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 626, 682
BstX2I RGATCY 3 cut(s) 186, 335, 383
BstYI RGATCY 3 cut(s) 186, 335, 383
Bsu15I ATCGAT 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 37, 570
CfoI GCGC 1 cut(s) 611
Cfr13I GGNCC 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 390
Csp6I GTAC 3 cut(s) 90, 160, 465
CviAII CATG 4 cut(s) 307, 408, 502, 556
CviQI GTAC 3 cut(s) 90, 160, 465
DdeI CTNAG 2 cut(s) 674, 708
DpnI GATC 6 cut(s) 114, 188, 337, 385, 393, 522
DpnII GATC 6 cut(s) 112, 186, 335, 383, 391, 520
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 3 cut(s) 272, 325, 546
EarI CTCTTC 3 cut(s) 272, 325, 546
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 306, 574
Eco24I GRGCYC 1 cut(s) 675
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 2 cut(s) 306, 574
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 2 cut(s) 306, 574
FaeI CATG 4 cut(s) 310, 411, 505, 559
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FatI CATG 4 cut(s) 306, 407, 501, 555
FauNDI CATATG 1 cut(s) 613
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 2 cut(s) 640, 696
FokI GGATG 2 cut(s) 44, 557
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 2 cut(s) 640, 696
FspBI CTAG 4 cut(s) 315, 324, 363, 462
GlaI GCGC 1 cut(s) 610
GluI GCNGC 2 cut(s) 640, 696
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 3 cut(s) 93, 153, 711
HapII CCGG 2 cut(s) 94, 627
HhaI GCGC 1 cut(s) 611
Hin1II CATG 4 cut(s) 310, 411, 505, 559
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 4 cut(s) 100, 123, 178, 428
HpaII CCGG 2 cut(s) 94, 627
HphI GGTGA 3 cut(s) 435, 515, 575
Hpy166II GTNNAC 4 cut(s) 99, 360, 427, 591
Hpy188I TCNGA 4 cut(s) 117, 201, 291, 598
Hpy188III TCNNGA 8 cut(s) 55, 110, 170, 182, 247, 263, 668, 690
Hpy8I GTNNAC 4 cut(s) 99, 360, 427, 591
HpyAV CCTTC 2 cut(s) 457, 696
HpyCH4III ACNGT 3 cut(s) 207, 563, 650
HpyCH4IV ACGT 2 cut(s) 231, 294
HpyCH4V TGCA 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 615, 704
HpyF3I CTNAG 2 cut(s) 674, 708
HpySE526I ACGT 2 cut(s) 231, 294
Hsp92II CATG 4 cut(s) 310, 411, 505, 559
HspAI GCGC 1 cut(s) 609
KpnI GGTACC 1 cut(s) 163
Kzo9I GATC 6 cut(s) 112, 186, 335, 383, 391, 520
LguI GCTCTTC 1 cut(s) 325
LmnI GCTCC 2 cut(s) 133, 692
Lsp1109I GCAGC 2 cut(s) 626, 682
LweI GCATC 1 cut(s) 364
MaeI CTAG 4 cut(s) 315, 324, 363, 462
MaeII ACGT 2 cut(s) 231, 294
MalI GATC 6 cut(s) 114, 188, 337, 385, 393, 522
MboI GATC 6 cut(s) 112, 186, 335, 383, 391, 520
MboII GAAGA 4 cut(s) 289, 312, 530, 533
MflI RGATCY 3 cut(s) 186, 335, 383
MhlI GDGCHC 2 cut(s) 306, 675
MluCI AATT 2 cut(s) 349, 397
MlyI GAGTC 2 cut(s) 94, 422
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 1 cut(s) 284
MspI CCGG 2 cut(s) 94, 627
MspR9I CCNGG 2 cut(s) 94, 527
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 3 cut(s) 79, 615, 704
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 613
NdeII GATC 6 cut(s) 112, 186, 335, 383, 391, 520
NlaIII CATG 4 cut(s) 310, 411, 505, 559
NlaIV GGNNCC 5 cut(s) 161, 245, 303, 337, 385
PaeR7I CTCGAG 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 123, 178
PkrI GCNGC 2 cut(s) 641, 697
PleI GAGTC 2 cut(s) 94, 422
PpsI GAGTC 2 cut(s) 94, 422
Psp124BI GAGCTC 1 cut(s) 675
Psp1406I AACGTT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 5 cut(s) 161, 245, 303, 337, 385
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 3 cut(s) 186, 335, 383
RsaI GTAC 3 cut(s) 91, 161, 466
RsaNI GTAC 3 cut(s) 90, 160, 465
SacI GAGCTC 1 cut(s) 675
SapI GCTCTTC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 2 cut(s) 640, 696
Sau3AI GATC 6 cut(s) 112, 186, 335, 383, 391, 520
Sau96I GGNCC 1 cut(s) 357
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 2 cut(s) 94, 422
ScrFI CCNGG 2 cut(s) 94, 527
SduI GDGCHC 2 cut(s) 306, 675
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 668
SmoI CTYRAG 3 cut(s) 128, 261, 668
SpeI ACTAGT 2 cut(s) 362, 461
Sse9I AATT 2 cut(s) 349, 397
SspMI CTAG 4 cut(s) 315, 324, 363, 462
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 92, 525
StyI CCWWGG 2 cut(s) 306, 574
TaaI ACNGT 3 cut(s) 207, 563, 650
TaiI ACGT 2 cut(s) 234, 297
TaqI TCGA 2 cut(s) 262, 390
TasI AATT 2 cut(s) 349, 397
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 2 cut(s) 123, 178
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TseI GCWGC 2 cut(s) 639, 695
TspDTI ATGAA 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 357
XapI RAATTY 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 4 cut(s) 315, 324, 363, 462
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.