Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026563.1

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

10209 .. 10748

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026563.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgctttgcaggcggagcagtaccaggtggactcccactacagatcatataagaatcctcaataagctttactacaacaagggagttaggtccccaacggcagagcagattcagaggatctgtctccagctgaaactgtacagaaagatagagagcaagaacatcttttattggttcagaaaccacaaggctcgggagaggcaaaagaagaggttaacttcggatgttcatgtgcccatgcaaagatcagggcttgttggtaatggtaatggtaccaattggaaacctgaggatcagtatattaaattcggatcttctgcatctgctatcgcttctgcttcttcagctgatgtgattgctgttaacgggcagatggggaactatggtggttatggatctatgaacatggagaagagttttagggattgttcaatctcagctggagggggaactagttctactggtgttggtagatccattagtcacaattttgggtcatgggtcggctgccgtgttgacccatattcctcctcatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

179

Amino Acids

19.94

Weight (kDa)

10.06

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	5 cut(s)	125, 300, 319, 403, 468
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	3 cut(s)	22, 140, 274
AgsI	TTSAA	1 cut(s)	432
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	4 cut(s)	67, 130, 347, 440
AluI	AGCT	4 cut(s)	67, 130, 347, 440
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	5 cut(s)	125, 300, 319, 403, 468
Ama87I	CYCGRG	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	454
Asp718I	GGTACC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	90
AxyI	CCTNAGG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	114, 495
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	2 cut(s)	453, 538
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	509
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	92, 274
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	329
BpmI	CTGGAG	2 cut(s)	110, 462
Bse1I	ACTGG	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	229, 533
BseMII	CTCAG	2 cut(s)	279, 450
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	520
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	494
BshNI	GGYRCC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	7 cut(s)	43, 117, 245, 292, 311, 395, 473
BspACI	CCGC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	280, 449
BspLI	GGNNCC	2 cut(s)	92, 274
BspPI	GGATC	5 cut(s)	125, 300, 319, 403, 468
BspT107I	GGYRCC	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	466
BssMI	GATC	7 cut(s)	43, 117, 245, 292, 311, 395, 473
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	2 cut(s)	203, 407
BstAUI	TGTACA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	288, 436
BstF5I	GGATG	2 cut(s)	229, 533
BstKTI	GATC	7 cut(s)	46, 120, 248, 295, 314, 398, 476
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	7 cut(s)	43, 117, 245, 292, 311, 395, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 15, 344
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	494
BstX2I	RGATCY	4 cut(s)	117, 311, 395, 473
BstYI	RGATCY	4 cut(s)	117, 311, 395, 473
Bsu36I	CCTNAGG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	229, 533
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	90
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	3 cut(s)	21, 139, 273
CviAII	CATG	4 cut(s)	230, 238, 406, 498
CviJI	RGCY	7 cut(s)	67, 130, 191, 253, 347, 440, 507
CviKI_1	RGCY	7 cut(s)	67, 130, 191, 253, 347, 440, 507
CviQI	GTAC	3 cut(s)	21, 139, 273
DdeI	CTNAG	2 cut(s)	288, 436
DpnI	GATC	7 cut(s)	45, 119, 247, 294, 313, 397, 475
DpnII	GATC	7 cut(s)	43, 117, 245, 292, 311, 395, 473
Eam1104I	CTCTTC	2 cut(s)	203, 407
EarI	CTCTTC	2 cut(s)	203, 407
EciI	GGCGGA	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	23
FaeI	CATG	4 cut(s)	233, 241, 409, 501
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	4 cut(s)	229, 237, 405, 497
Fnu4HI	GCNGC	1 cut(s)	508
FokI	GGATG	2 cut(s)	236, 520
Fsp4HI	GCNGC	1 cut(s)	508
FspBI	CTAG	2 cut(s)	453, 538
GluI	GCNGC	1 cut(s)	508
GsuI	CTGGAG	2 cut(s)	110, 462
Hin1II	CATG	4 cut(s)	233, 241, 409, 501
HincII	GTYRAC	3 cut(s)	216, 364, 517
HindII	GTYRAC	3 cut(s)	216, 364, 517
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	3 cut(s)	31, 54, 109
HpaI	GTTAAC	2 cut(s)	216, 364
Hpy166II	GTNNAC	4 cut(s)	30, 216, 364, 517
Hpy188I	TCNGA	4 cut(s)	114, 179, 223, 311
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	4 cut(s)	30, 216, 364, 517
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	9, 241, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 15, 344
HpyF3I	CTNAG	2 cut(s)	288, 436
Hsp92II	CATG	4 cut(s)	233, 241, 409, 501
KpnI	GGTACC	1 cut(s)	276
KspAI	GTTAAC	2 cut(s)	216, 364
Kzo9I	GATC	7 cut(s)	43, 117, 245, 292, 311, 395, 473
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	7 cut(s)	10, 37, 140, 234, 300, 426, 447
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	1 cut(s)	329
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	2 cut(s)	453, 538
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	7 cut(s)	45, 119, 247, 294, 313, 397, 475
MboI	GATC	7 cut(s)	43, 117, 245, 292, 311, 395, 473
MboII	GAAGA	4 cut(s)	220, 306, 333, 424
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	4 cut(s)	117, 311, 395, 473
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	277, 305, 487
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	7 cut(s)	68, 108, 192, 204, 283, 437, 538
MroXI	GAANNNNTTC	1 cut(s)	454
MseI	TTAA	3 cut(s)	215, 303, 363
MspA1I	CMGCKG	3 cut(s)	130, 347, 440
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	10, 15, 344
NdeII	GATC	7 cut(s)	43, 117, 245, 292, 311, 395, 473
NlaIII	CATG	4 cut(s)	233, 241, 409, 501
NlaIV	GGNNCC	2 cut(s)	92, 274
NmuCI	GTSAC	1 cut(s)	482
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	54, 109
PkrI	GCNGC	1 cut(s)	509
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	92, 274
PspPI	GGNCC	1 cut(s)	90
PspPPI	RGGWCCY	1 cut(s)	90
PsrI	GAACNNNNNNTAC	2 cut(s)	442, 474
PsuI	RGATCY	4 cut(s)	117, 311, 395, 473
PvuII	CAGCTG	3 cut(s)	130, 347, 440
RsaI	GTAC	3 cut(s)	22, 140, 274
RsaNI	GTAC	3 cut(s)	21, 139, 273
SaqAI	TTAA	3 cut(s)	215, 303, 363
SatI	GCNGC	1 cut(s)	508
Sau3AI	GATC	7 cut(s)	43, 117, 245, 292, 311, 395, 473
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	29, 69, 92, 132, 215, 289, 349, 442
SexAI	ACCWGGT	1 cut(s)	23
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	90
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	3 cut(s)	277, 305, 487
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	2 cut(s)	453, 538
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	138
TasI	AATT	3 cut(s)	277, 305, 487
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	54, 109
Tru1I	TTAA	3 cut(s)	215, 303, 363
Tru9I	TTAA	3 cut(s)	215, 303, 363
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	218, 416
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	454
XspI	CTAG	2 cut(s)	453, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.