Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010191.1

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

15613 .. 17825

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010191.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaggatccttctcttccttggtggtagcttcgctatgtgtatagcagcaagtatctgccttgttcgctggctctctgttgagaatacgattgctgcagaagaagcccaggccaactcgatgaacctttggctgtttatgaagaaatgggcagcaacttggcccgcgtccaacctgataagaatcctcaaggagctttactgcaacaagggagttaggtccccaactgcagagcagattcagaggatttgtctccagctgaaacggtatggaaagatcgagagcaagtacatcttttattggttcggaaaccacatggctcgggagaggcagaagaagaggtttacttcggatgttcatgtgcccatgcaaagatcagggcttattggtaatggtaatggtaccaattggaaacctgaggatcaatacattaacttcggatcttctgcatctgcttctgcttcttcagctggtgttattgcttttaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

163

Amino Acids

18.43

Weight (kDa)

9.77

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AccII	CGCG	1 cut(s)	167
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	3 cut(s)	14, 429, 448
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	2 cut(s)	290, 403
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	30, 196, 259, 470
AluI	AGCT	4 cut(s)	30, 196, 259, 470
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	14, 429, 448
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	111, 161
ApeKI	GCWGC	3 cut(s)	47, 95, 152
Asp718I	GGTACC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	162, 219
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	366
BamHI	GGATCC	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	59, 82, 164
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	490
BfmI	CTRYAG	2 cut(s)	96, 228
BisI	GCNGC	3 cut(s)	48, 96, 153
BlsI	GCNGC	3 cut(s)	49, 97, 154
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	162, 219
BmiI	GGNNCC	3 cut(s)	8, 221, 403
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	19, 108
Bse21I	CCTNAGG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	19, 108
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	3 cut(s)	59, 82, 164
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	113, 163
BshNI	GGYRCC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	113, 163
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	6, 276, 374, 421, 440
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	113, 163
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	8, 221, 403
BspMAI	CTGCAG	2 cut(s)	100, 232
BspPI	GGATC	3 cut(s)	14, 429, 448
BspT107I	GGYRCC	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	19, 108
BssMI	GATC	5 cut(s)	6, 276, 374, 421, 440
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	20, 332
BstC8I	GCNNGC	2 cut(s)	71, 165
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	167
BstKTI	GATC	5 cut(s)	9, 279, 377, 424, 443
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	5 cut(s)	6, 276, 374, 421, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 104, 467
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	2 cut(s)	96, 228
BstSLI	GKGCMC	1 cut(s)	366
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	59, 82, 164
BstX2I	RGATCY	2 cut(s)	6, 440
BstYI	RGATCY	2 cut(s)	6, 440
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	113, 163
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	71, 165
Cfr13I	GGNCC	2 cut(s)	162, 219
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	289, 402
CviAII	CATG	3 cut(s)	316, 359, 367
CviQI	GTAC	2 cut(s)	289, 402
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	5 cut(s)	8, 278, 376, 423, 442
DpnII	GATC	5 cut(s)	6, 276, 374, 421, 440
Eam1104I	CTCTTC	2 cut(s)	20, 332
EarI	CTCTTC	2 cut(s)	20, 332
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	450
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	3 cut(s)	319, 362, 370
FaiI	YATR	7 cut(s)	38, 44, 140, 270, 317, 360, 368
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	315, 358, 366
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	48, 96, 153
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	48, 96, 153
FspBI	CTAG	1 cut(s)	490
GluI	GCNGC	3 cut(s)	48, 96, 153
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	113, 163
HgaI	GACGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	319, 362, 370
HinfI	GANTC	2 cut(s)	183, 238
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	4 cut(s)	243, 308, 352, 440
Hpy188III	TCNNGA	2 cut(s)	280, 323
Hpy8I	GTNNAC	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	5 cut(s)	98, 204, 230, 370, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 104, 467
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	319, 362, 370
KpnI	GGTACC	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	6, 276, 374, 421, 440
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	8 cut(s)	55, 95, 122, 188, 269, 363, 429, 456
Lsp1109I	GCAGC	3 cut(s)	59, 82, 164
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	1 cut(s)	490
MalI	GATC	5 cut(s)	8, 278, 376, 423, 442
MboI	GATC	5 cut(s)	6, 276, 374, 421, 440
MboII	GAAGA	7 cut(s)	7, 113, 154, 346, 349, 435, 456
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	2 cut(s)	6, 440
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	5 cut(s)	197, 237, 321, 333, 412
MseI	TTAA	2 cut(s)	432, 486
MspA1I	CMGCKG	2 cut(s)	259, 470
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	66, 104, 467
NdeII	GATC	5 cut(s)	6, 276, 374, 421, 440
NlaIII	CATG	3 cut(s)	319, 362, 370
NlaIV	GGNNCC	3 cut(s)	8, 221, 403
PfeI	GAWTC	2 cut(s)	183, 238
PkrI	GCNGC	3 cut(s)	49, 97, 154
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	8, 221, 403
PspPI	GGNCC	2 cut(s)	162, 219
PspPPI	RGGWCCY	1 cut(s)	219
PstI	CTGCAG	2 cut(s)	100, 232
PsuI	RGATCY	2 cut(s)	6, 440
PvuII	CAGCTG	2 cut(s)	259, 470
RsaI	GTAC	2 cut(s)	290, 403
RsaNI	GTAC	2 cut(s)	289, 402
SaqAI	TTAA	2 cut(s)	432, 486
SatI	GCNGC	3 cut(s)	48, 96, 153
Sau3AI	GATC	5 cut(s)	6, 276, 374, 421, 440
Sau96I	GGNCC	2 cut(s)	162, 219
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	32, 129, 177, 198, 221, 261, 344, 418, 472
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	2 cut(s)	96, 228
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	119, 279
TasI	AATT	1 cut(s)	406
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	183, 238
Tru1I	TTAA	2 cut(s)	432, 486
Tru9I	TTAA	2 cut(s)	432, 486
TseI	GCWGC	3 cut(s)	47, 95, 152
TspDTI	ATGAA	3 cut(s)	137, 155, 347
VpaK11BI	GGWCC	1 cut(s)	219
XspI	CTAG	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.