Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 295 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 710 |
| AccII | CGCG | 1 cut(s) | 933 |
| AciI | CCGC | 2 cut(s) | 939, 1010 |
| AclWI | GGATC | 2 cut(s) | 1103, 1235 |
| AcoI | YGGCCR | 2 cut(s) | 118, 827 |
| AcsI | RAATTY | 3 cut(s) | 55, 233, 955 |
| AcuI | CTGAAG | 3 cut(s) | 156, 443, 1179 |
| AfaI | GTAC | 3 cut(s) | 777, 787, 799 |
| AfeI | AGCGCT | 1 cut(s) | 189 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 710 |
| AflIII | ACRYGT | 2 cut(s) | 478, 604 |
| AgsI | TTSAA | 5 cut(s) | 148, 445, 793, 890, 988 |
| AjnI | CCWGG | 2 cut(s) | 338, 703 |
| AluBI | AGCT | 6 cut(s) | 21, 140, 749, 812, 1064, 1193 |
| AluI | AGCT | 6 cut(s) | 21, 140, 749, 812, 1064, 1193 |
| Alw26I | GTCTC | 3 cut(s) | 633, 749, 1073 |
| AlwI | GGATC | 2 cut(s) | 1103, 1235 |
| Aor51HI | AGCGCT | 1 cut(s) | 189 |
| AoxI | GGCC | 2 cut(s) | 118, 827 |
| ApeKI | GCWGC | 2 cut(s) | 170, 343 |
| ApoI | RAATTY | 3 cut(s) | 55, 233, 955 |
| AseI | ATTAAT | 2 cut(s) | 375, 1077 |
| AspLEI | GCGC | 1 cut(s) | 190 |
| AspS9I | GGNCC | 2 cut(s) | 242, 701 |
| AsuC2I | CCSGG | 1 cut(s) | 831 |
| AsuHPI | GGTGA | 4 cut(s) | 370, 746, 938, 982 |
| AvaII | GGWCC | 2 cut(s) | 242, 701 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| BanI | GGYRCC | 1 cut(s) | 295 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 525, 557 |
| BbvI | GCAGC | 2 cut(s) | 182, 330 |
| BccI | CCATC | 4 cut(s) | 22, 110, 572, 1046 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 632, 666 |
| BciT130I | CCWGG | 2 cut(s) | 340, 705 |
| BciVI | GTATCC | 1 cut(s) | 544 |
| BclI | TGATCA | 2 cut(s) | 369, 907 |
| BcnI | CCSGG | 1 cut(s) | 831 |
| BcoDI | GTCTC | 3 cut(s) | 633, 749, 1073 |
| BfaI | CTAG | 3 cut(s) | 813, 1061, 1194 |
| BfmI | CTRYAG | 1 cut(s) | 1047 |
| BfoI | RGCGCY | 1 cut(s) | 191 |
| BfuI | GTATCC | 1 cut(s) | 544 |
| BisI | GCNGC | 2 cut(s) | 171, 344 |
| BlsI | GCNGC | 2 cut(s) | 172, 345 |
| Bme1390I | CCNGG | 3 cut(s) | 340, 705, 831 |
| Bme18I | GGWCC | 2 cut(s) | 242, 701 |
| BmgT120I | GGNCC | 2 cut(s) | 242, 701 |
| BmiI | GGNNCC | 1 cut(s) | 297 |
| BmrFI | CCNGG | 3 cut(s) | 340, 705, 831 |
| BmrI | ACTGGG | 1 cut(s) | 1167 |
| BmsI | GCATC | 2 cut(s) | 121, 1201 |
| BmuI | ACTGGG | 1 cut(s) | 1167 |
| BpuEI | CTTGAG | 1 cut(s) | 294 |
| BpuMI | CCSGG | 1 cut(s) | 831 |
| BsaJI | CCNNGG | 1 cut(s) | 416 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 710 |
| Bse1I | ACTGG | 1 cut(s) | 1173 |
| Bse3DI | GCAATG | 4 cut(s) | 549, 690, 928, 1180 |
| BseBI | CCWGG | 2 cut(s) | 340, 705 |
| BseDI | CCNNGG | 1 cut(s) | 416 |
| BseGI | GGATG | 1 cut(s) | 1018 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 710 |
| BseMI | GCAATG | 4 cut(s) | 549, 690, 928, 1180 |
| BseMII | CTCAG | 2 cut(s) | 252, 681 |
| BseNI | ACTGG | 1 cut(s) | 1173 |
| BseRI | GAGGAG | 1 cut(s) | 297 |
| BseXI | GCAGC | 2 cut(s) | 182, 330 |
| BsgI | GTGCAG | 1 cut(s) | 189 |
| Bsh1236I | CGCG | 1 cut(s) | 933 |
| BshFI | GGCC | 2 cut(s) | 120, 829 |
| BshNI | GGYRCC | 1 cut(s) | 295 |
| BsiSI | CCGG | 1 cut(s) | 830 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 710 |
| BsmAI | GTCTC | 3 cut(s) | 633, 749, 1073 |
| BsmBI | CGTCTC | 1 cut(s) | 633 |
| BsmI | GAATGC | 2 cut(s) | 154, 983 |
| BsnI | GGCC | 2 cut(s) | 120, 829 |
| Bsp143I | GATC | 5 cut(s) | 369, 454, 907, 1108, 1240 |
| BspACI | CCGC | 2 cut(s) | 939, 1010 |
| BspANI | GGCC | 2 cut(s) | 120, 829 |
| BspCNI | CTCAG | 2 cut(s) | 251, 680 |
| BspFNI | CGCG | 1 cut(s) | 933 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 1 cut(s) | 297 |
| BspMAI | CTGCAG | 1 cut(s) | 1051 |
| BspPI | GGATC | 2 cut(s) | 1103, 1235 |
| BspT107I | GGYRCC | 1 cut(s) | 295 |
| BsrDI | GCAATG | 4 cut(s) | 549, 690, 928, 1180 |
| BsrI | ACTGG | 1 cut(s) | 1173 |
| BssECI | CCNNGG | 1 cut(s) | 416 |
| BssMI | GATC | 5 cut(s) | 369, 454, 907, 1108, 1240 |
| BssT1I | CCWWGG | 1 cut(s) | 416 |
| Bst2UI | CCWGG | 2 cut(s) | 340, 705 |
| Bst4CI | ACNGT | 2 cut(s) | 104, 760 |
| BstC8I | GCNNGC | 1 cut(s) | 19 |
| BstDEI | CTNAG | 2 cut(s) | 238, 667 |
| BstF5I | GGATG | 1 cut(s) | 1018 |
| BstFNI | CGCG | 1 cut(s) | 933 |
| BstH2I | RGCGCY | 1 cut(s) | 191 |
| BstHHI | GCGC | 1 cut(s) | 190 |
| BstKTI | GATC | 5 cut(s) | 372, 457, 910, 1111, 1243 |
| BstMAI | GTCTC | 3 cut(s) | 633, 749, 1073 |
| BstMBI | GATC | 5 cut(s) | 369, 454, 907, 1108, 1240 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 692 |
| BstNI | CCWGG | 2 cut(s) | 340, 705 |
| BstNSI | RCATGY | 2 cut(s) | 608, 1022 |
| BstSCI | CCNGG | 3 cut(s) | 338, 703, 829 |
| BstSFI | CTRYAG | 1 cut(s) | 1047 |
| BstUI | CGCG | 1 cut(s) | 933 |
| BstV1I | GCAGC | 2 cut(s) | 182, 330 |
| BstX2I | RGATCY | 1 cut(s) | 1108 |
| BstYI | RGATCY | 1 cut(s) | 1108 |
| BsuI | GTATCC | 1 cut(s) | 544 |
| BsuRI | GGCC | 2 cut(s) | 120, 829 |
| BtsCI | GGATG | 1 cut(s) | 1018 |
| BtsI | GCAGTG | 1 cut(s) | 969 |
| BtsIMutI | CAGTG | 2 cut(s) | 969, 1180 |
| Cac8I | GCNNGC | 1 cut(s) | 19 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 1 cut(s) | 190 |
| Cfr13I | GGNCC | 2 cut(s) | 242, 701 |
| CseI | GACGC | 1 cut(s) | 1235 |
| CsiI | ACCWGGT | 1 cut(s) | 703 |
| Csp6I | GTAC | 3 cut(s) | 776, 786, 798 |
| CviAII | CATG | 6 cut(s) | 153, 605, 617, 710, 825, 1019 |
| CviQI | GTAC | 3 cut(s) | 776, 786, 798 |
| DdeI | CTNAG | 2 cut(s) | 238, 667 |
| DpnI | GATC | 5 cut(s) | 371, 456, 909, 1110, 1242 |
| DpnII | GATC | 5 cut(s) | 369, 454, 907, 1108, 1240 |
| EaeI | YGGCCR | 2 cut(s) | 118, 827 |
| EciI | GGCGGA | 1 cut(s) | 1025 |
| Eco130I | CCWWGG | 1 cut(s) | 416 |
| Eco32I | GATATC | 1 cut(s) | 589 |
| Eco47I | GGWCC | 2 cut(s) | 242, 701 |
| Eco47III | AGCGCT | 1 cut(s) | 189 |
| Eco57I | CTGAAG | 3 cut(s) | 156, 443, 1179 |
| EcoO109I | RGGNCCY | 1 cut(s) | 242 |
| EcoRI | GAATTC | 1 cut(s) | 955 |
| EcoRII | CCWGG | 2 cut(s) | 338, 703 |
| EcoRV | GATATC | 1 cut(s) | 589 |
| EcoT14I | CCWWGG | 1 cut(s) | 416 |
| EcoT22I | ATGCAT | 1 cut(s) | 154 |
| ErhI | CCWWGG | 1 cut(s) | 416 |
| Esp3I | CGTCTC | 1 cut(s) | 633 |
| FaeI | CATG | 6 cut(s) | 156, 608, 620, 713, 828, 1022 |
| FatI | CATG | 6 cut(s) | 152, 604, 616, 709, 824, 1018 |
| FbaI | TGATCA | 2 cut(s) | 369, 907 |
| Fnu4HI | GCNGC | 2 cut(s) | 171, 344 |
| FokI | GGATG | 1 cut(s) | 1025 |
| Fsp4HI | GCNGC | 2 cut(s) | 171, 344 |
| FspBI | CTAG | 3 cut(s) | 813, 1061, 1194 |
| GlaI | GCGC | 1 cut(s) | 189 |
| GluI | GCNGC | 2 cut(s) | 171, 344 |
| HaeII | RGCGCY | 1 cut(s) | 191 |
| HaeIII | GGCC | 2 cut(s) | 120, 829 |
| HapII | CCGG | 1 cut(s) | 830 |
| HgaI | GACGC | 1 cut(s) | 1235 |
| HhaI | GCGC | 1 cut(s) | 190 |
| Hin1II | CATG | 6 cut(s) | 156, 608, 620, 713, 828, 1022 |
| Hin6I | GCGC | 1 cut(s) | 188 |
| HinP1I | GCGC | 1 cut(s) | 188 |
| HindIII | AAGCTT | 2 cut(s) | 19, 138 |
| HinfI | GANTC | 3 cut(s) | 335, 471, 816 |
| HpaII | CCGG | 1 cut(s) | 830 |
| HphI | GGTGA | 4 cut(s) | 370, 746, 938, 982 |
| Hpy166II | GTNNAC | 7 cut(s) | 329, 361, 413, 423, 470, 701, 929 |
| Hpy188I | TCNGA | 1 cut(s) | 355 |
| Hpy188III | TCNNGA | 9 cut(s) | 145, 311, 600, 617, 820, 840, 1112, 1223, 1238 |
| Hpy8I | GTNNAC | 7 cut(s) | 329, 361, 413, 423, 470, 701, 929 |
| Hpy99I | CGWCG | 1 cut(s) | 955 |
| HpyAV | CCTTC | 2 cut(s) | 737, 799 |
| HpyCH4III | ACNGT | 2 cut(s) | 104, 760 |
| HpyCH4IV | ACGT | 2 cut(s) | 480, 950 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 692 |
| HpyF3I | CTNAG | 2 cut(s) | 238, 667 |
| HpySE526I | ACGT | 2 cut(s) | 480, 950 |
| Hsp92II | CATG | 6 cut(s) | 156, 608, 620, 713, 828, 1022 |
| HspAI | GCGC | 1 cut(s) | 188 |
| Ksp22I | TGATCA | 2 cut(s) | 369, 907 |
| Kzo9I | GATC | 5 cut(s) | 369, 454, 907, 1108, 1240 |
| LmnI | GCTCC | 3 cut(s) | 746, 809, 1043 |
| Lsp1109I | GCAGC | 2 cut(s) | 182, 330 |
| LweI | GCATC | 2 cut(s) | 121, 1201 |
| MabI | ACCWGGT | 1 cut(s) | 703 |
| MaeI | CTAG | 3 cut(s) | 813, 1061, 1194 |
| MaeII | ACGT | 2 cut(s) | 480, 950 |
| MalI | GATC | 5 cut(s) | 371, 456, 909, 1110, 1242 |
| MboI | GATC | 5 cut(s) | 369, 454, 907, 1108, 1240 |
| MboII | GAAGA | 4 cut(s) | 433, 449, 533, 1172 |
| MfeI | CAATTG | 1 cut(s) | 445 |
| MflI | RGATCY | 1 cut(s) | 1108 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluCI | AATT | 9 cut(s) | 55, 233, 445, 514, 627, 714, 737, 781, 955 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MlyI | GAGTC | 1 cut(s) | 465 |
| MmeI | TCCRAC | 2 cut(s) | 91, 1226 |
| MnlI | CCTC | 6 cut(s) | 318, 349, 421, 760, 961, 992 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| Mph1103I | ATGCAT | 1 cut(s) | 154 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 6 cut(s) | 60, 87, 375, 464, 657, 1077 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1079 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| MspI | CCGG | 1 cut(s) | 830 |
| MspR9I | CCNGG | 3 cut(s) | 340, 705, 831 |
| MunI | CAATTG | 1 cut(s) | 445 |
| Mva1269I | GAATGC | 2 cut(s) | 154, 983 |
| MvaI | CCWGG | 2 cut(s) | 340, 705 |
| MvnI | CGCG | 1 cut(s) | 933 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 692 |
| NciI | CCSGG | 1 cut(s) | 831 |
| NdeII | GATC | 5 cut(s) | 369, 454, 907, 1108, 1240 |
| NlaIII | CATG | 6 cut(s) | 156, 608, 620, 713, 828, 1022 |
| NlaIV | GGNNCC | 1 cut(s) | 297 |
| NsiI | ATGCAT | 1 cut(s) | 154 |
| NspI | RCATGY | 2 cut(s) | 608, 1022 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PciI | ACATGT | 1 cut(s) | 604 |
| PctI | GAATGC | 2 cut(s) | 154, 983 |
| PfeI | GAWTC | 2 cut(s) | 335, 816 |
| PflFI | GACNNNGTC | 1 cut(s) | 705 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 710 |
| PkrI | GCNGC | 2 cut(s) | 172, 345 |
| PleI | GAGTC | 1 cut(s) | 465 |
| PpsI | GAGTC | 1 cut(s) | 465 |
| PpuMI | RGGWCCY | 1 cut(s) | 242 |
| PscI | ACATGT | 1 cut(s) | 604 |
| PshBI | ATTAAT | 2 cut(s) | 375, 1077 |
| Psp5II | RGGWCCY | 1 cut(s) | 242 |
| Psp6I | CCWGG | 2 cut(s) | 338, 703 |
| PspGI | CCWGG | 2 cut(s) | 338, 703 |
| PspN4I | GGNNCC | 1 cut(s) | 297 |
| PspPI | GGNCC | 2 cut(s) | 242, 701 |
| PspPPI | RGGWCCY | 1 cut(s) | 242 |
| PstI | CTGCAG | 1 cut(s) | 1051 |
| PsuI | RGATCY | 1 cut(s) | 1108 |
| PsyI | GACNNNGTC | 1 cut(s) | 705 |
| RsaI | GTAC | 3 cut(s) | 777, 787, 799 |
| RsaNI | GTAC | 3 cut(s) | 776, 786, 798 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1079 |
| SaqAI | TTAA | 6 cut(s) | 60, 87, 375, 464, 657, 1077 |
| SatI | GCNGC | 2 cut(s) | 171, 344 |
| Sau3AI | GATC | 5 cut(s) | 369, 454, 907, 1108, 1240 |
| Sau96I | GGNCC | 2 cut(s) | 242, 701 |
| SchI | GAGTC | 1 cut(s) | 465 |
| ScrFI | CCNGG | 3 cut(s) | 340, 705, 831 |
| SexAI | ACCWGGT | 1 cut(s) | 703 |
| SfaNI | GCATC | 2 cut(s) | 121, 1201 |
| SfcI | CTRYAG | 1 cut(s) | 1047 |
| SinI | GGWCC | 2 cut(s) | 242, 701 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1079 |
| SmlI | CTYRAG | 1 cut(s) | 309 |
| SmoI | CTYRAG | 1 cut(s) | 309 |
| Sse9I | AATT | 9 cut(s) | 55, 233, 445, 514, 627, 714, 737, 781, 955 |
| SsiI | CCGC | 2 cut(s) | 939, 1010 |
| SspI | AATATT | 1 cut(s) | 613 |
| SspMI | CTAG | 3 cut(s) | 813, 1061, 1194 |
| StyD4I | CCNGG | 3 cut(s) | 338, 703, 829 |
| StyI | CCWWGG | 1 cut(s) | 416 |
| TaaI | ACNGT | 2 cut(s) | 104, 760 |
| TaiI | ACGT | 2 cut(s) | 483, 953 |
| TaqI | TCGA | 2 cut(s) | 953, 997 |
| TasI | AATT | 9 cut(s) | 55, 233, 445, 514, 627, 714, 737, 781, 955 |
| TfiI | GAWTC | 2 cut(s) | 335, 816 |
| Tru1I | TTAA | 6 cut(s) | 60, 87, 375, 464, 657, 1077 |
| Tru9I | TTAA | 6 cut(s) | 60, 87, 375, 464, 657, 1077 |
| TscAI | CASTG | 2 cut(s) | 969, 1180 |
| TseI | GCWGC | 2 cut(s) | 170, 343 |
| TspDTI | ATGAA | 7 cut(s) | 399, 533, 605, 818, 1029, 1097, 1169 |
| TspGWI | ACGGA | 1 cut(s) | 1117 |
| TspRI | CASTG | 2 cut(s) | 969, 1180 |
| Tth111I | GACNNNGTC | 1 cut(s) | 705 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 710 |
| VpaK11BI | GGWCC | 2 cut(s) | 242, 701 |
| VspI | ATTAAT | 2 cut(s) | 375, 1077 |
| XapI | RAATTY | 3 cut(s) | 55, 233, 955 |
| XceI | RCATGY | 2 cut(s) | 608, 1022 |
| XspI | CTAG | 3 cut(s) | 813, 1061, 1194 |
| Zsp2I | ATGCAT | 1 cut(s) | 154 |