Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

7445771 .. 7446823

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0048100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACTTGTTTGAAGGTGAATTCGAATGTCATAAGTCCGAGAAATATACCGGAAGATTGTGATGAGGAAGCAGAGGGAGTCCAGAGCAAGGAGAGGTGGGATTATGTGAAAGTTAACATGGATGGGATTGTTATTGGAAGAAAAGTTTGTGTACTTGATCATAGTGGCTACTCGAGCCTTGCATTTCAACTAGAAGACATGTTTGGTAGACAATCTGTATCTGGGTTGAGGTTGTTCCAGGTTGGATCTGAGTTTTCACTTTTTTACAAGGACAGAGATGACAATTGGAGAACTGTTGGTGATGTTCCATGGAGGGAATTCGTAGAATGTGTGAAGCGGCTAAGGATTGCGAGAAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

120

Amino Acids

13.91

Weight (kDa)

5.86

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	21 - 119	4.5e-22	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	208
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	19, 317
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	13, 188
AjnI	CCWGG	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	19, 317
AsuHPI	GGTGA	2 cut(s)	28, 311
AsuII	TTCGAA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	201
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	239
BclI	TGATCA	1 cut(s)	157
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	341
Bpu14I	TTCGAA	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	308
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	157, 245
Bsp19I	CCATGG	1 cut(s)	308
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	157, 245
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	249, 341
BstDSI	CCRYGG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	160, 248
BstMBI	GATC	2 cut(s)	157, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	3 cut(s)	118, 199, 309
CviJI	RGCY	3 cut(s)	168, 177, 340
CviKI_1	RGCY	3 cut(s)	168, 177, 340
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	2 cut(s)	249, 341
DpnI	GATC	2 cut(s)	159, 247
DpnII	GATC	2 cut(s)	157, 245
Eco130I	CCWWGG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	172
EcoRI	GAATTC	2 cut(s)	19, 317
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	121, 202, 312
FaiI	YATR	7 cut(s)	32, 47, 105, 119, 162, 200, 310
FatI	CATG	3 cut(s)	117, 198, 308
FbaI	TGATCA	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	338
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	3 cut(s)	121, 202, 312
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	78
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	28, 311
Hpy166II	GTNNAC	3 cut(s)	115, 152, 209
Hpy188I	TCNGA	2 cut(s)	39, 250
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	3 cut(s)	115, 152, 209
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	2 cut(s)	249, 341
Hsp92II	CATG	3 cut(s)	121, 202, 312
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	157, 245
LpnPI	CCDG	5 cut(s)	63, 95, 207, 224, 251
MaeI	CTAG	1 cut(s)	191
MalI	GATC	2 cut(s)	159, 247
MboI	GATC	2 cut(s)	157, 245
MboII	GAAGA	3 cut(s)	65, 150, 206
MfeI	CAATTG	1 cut(s)	283
MflI	RGATCY	1 cut(s)	245
MluCI	AATT	3 cut(s)	19, 283, 317
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	58, 67, 87, 222, 306
MseI	TTAA	1 cut(s)	114
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	157, 245
NlaIII	CATG	3 cut(s)	121, 202, 312
NspI	RCATGY	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	172
PciI	ACATGT	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspXI	VCTCGAGB	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	157, 245
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	4 cut(s)	18, 98, 233, 243
Sfr274I	CTCGAG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	3 cut(s)	19, 283, 317
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	23, 173
TasI	AATT	3 cut(s)	19, 283, 317
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
XapI	RAATTY	2 cut(s)	19, 317
XceI	RCATGY	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	208
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.