Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 31 - 91 | 1.5e-06 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 341 |
| AccB1I | GGYRCC | 1 cut(s) | 341 |
| AciI | CCGC | 1 cut(s) | 82 |
| AclWI | GGATC | 3 cut(s) | 194, 369, 388 |
| AcuI | CTGAAG | 1 cut(s) | 390 |
| AfaI | GTAC | 3 cut(s) | 91, 230, 343 |
| AjnI | CCWGG | 1 cut(s) | 92 |
| AluBI | AGCT | 3 cut(s) | 136, 199, 410 |
| AluI | AGCT | 3 cut(s) | 136, 199, 410 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AlwI | GGATC | 3 cut(s) | 194, 369, 388 |
| Asp718I | GGTACC | 1 cut(s) | 341 |
| AspS9I | GGNCC | 1 cut(s) | 159 |
| AvaII | GGWCC | 1 cut(s) | 159 |
| AxyI | CCTNAGG | 1 cut(s) | 357 |
| BaeGI | GKGCMC | 1 cut(s) | 306 |
| BanI | GGYRCC | 1 cut(s) | 341 |
| BccI | CCATC | 1 cut(s) | 26 |
| BciT130I | CCWGG | 1 cut(s) | 94 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BfaI | CTAG | 1 cut(s) | 430 |
| BfmI | CTRYAG | 1 cut(s) | 168 |
| Bme1390I | CCNGG | 1 cut(s) | 94 |
| Bme18I | GGWCC | 1 cut(s) | 159 |
| BmgT120I | GGNCC | 1 cut(s) | 159 |
| BmiI | GGNNCC | 3 cut(s) | 6, 161, 343 |
| BmrFI | CCNGG | 1 cut(s) | 94 |
| BmsI | GCATC | 1 cut(s) | 398 |
| BpmI | CTGGAG | 1 cut(s) | 179 |
| Bpu10I | CCTNAGC | 1 cut(s) | 261 |
| BsaBI | GATNNNNATC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 129 |
| Bse21I | CCTNAGG | 1 cut(s) | 357 |
| Bse8I | GATNNNNATC | 1 cut(s) | 122 |
| BseBI | CCWGG | 1 cut(s) | 94 |
| BseDI | CCNNGG | 2 cut(s) | 27, 129 |
| BseGI | GGATG | 2 cut(s) | 37, 298 |
| BseJI | GATNNNNATC | 1 cut(s) | 122 |
| BseMII | CTCAG | 2 cut(s) | 275, 348 |
| BseSI | GKGCMC | 1 cut(s) | 306 |
| BshNI | GGYRCC | 1 cut(s) | 341 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| Bsp1286I | GDGCHC | 1 cut(s) | 306 |
| Bsp143I | GATC | 5 cut(s) | 186, 216, 314, 361, 380 |
| BspACI | CCGC | 1 cut(s) | 82 |
| BspCNI | CTCAG | 2 cut(s) | 274, 349 |
| BspLI | GGNNCC | 3 cut(s) | 6, 161, 343 |
| BspMAI | CTGCAG | 1 cut(s) | 172 |
| BspPI | GGATC | 3 cut(s) | 194, 369, 388 |
| BspT107I | GGYRCC | 1 cut(s) | 341 |
| BssECI | CCNNGG | 2 cut(s) | 27, 129 |
| BssMI | GATC | 5 cut(s) | 186, 216, 314, 361, 380 |
| Bst2UI | CCWGG | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 1 cut(s) | 207 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstDEI | CTNAG | 2 cut(s) | 261, 357 |
| BstDSI | CCRYGG | 1 cut(s) | 129 |
| BstF5I | GGATG | 2 cut(s) | 37, 298 |
| BstKTI | GATC | 5 cut(s) | 189, 219, 317, 364, 383 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 5 cut(s) | 186, 216, 314, 361, 380 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 79, 407 |
| BstNI | CCWGG | 1 cut(s) | 94 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 1 cut(s) | 92 |
| BstSFI | CTRYAG | 1 cut(s) | 168 |
| BstSLI | GKGCMC | 1 cut(s) | 306 |
| BstX2I | RGATCY | 2 cut(s) | 186, 380 |
| BstYI | RGATCY | 2 cut(s) | 186, 380 |
| Bsu36I | CCTNAGG | 1 cut(s) | 357 |
| BtgI | CCRYGG | 1 cut(s) | 129 |
| BtsCI | GGATG | 2 cut(s) | 37, 298 |
| Cfr13I | GGNCC | 1 cut(s) | 159 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| Csp6I | GTAC | 3 cut(s) | 90, 229, 342 |
| CviAII | CATG | 4 cut(s) | 70, 256, 299, 307 |
| CviJI | RGCY | 6 cut(s) | 53, 136, 199, 260, 322, 410 |
| CviKI_1 | RGCY | 6 cut(s) | 53, 136, 199, 260, 322, 410 |
| CviQI | GTAC | 3 cut(s) | 90, 229, 342 |
| DdeI | CTNAG | 2 cut(s) | 261, 357 |
| DpnI | GATC | 5 cut(s) | 188, 218, 316, 363, 382 |
| DpnII | GATC | 5 cut(s) | 186, 216, 314, 361, 380 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Eco47I | GGWCC | 1 cut(s) | 159 |
| Eco57I | CTGAAG | 1 cut(s) | 390 |
| Eco81I | CCTNAGG | 1 cut(s) | 357 |
| EcoO109I | RGGNCCY | 1 cut(s) | 159 |
| EcoRII | CCWGG | 1 cut(s) | 92 |
| FaeI | CATG | 4 cut(s) | 73, 259, 302, 310 |
| FaiI | YATR | 6 cut(s) | 71, 112, 210, 257, 300, 308 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 4 cut(s) | 69, 255, 298, 306 |
| FokI | GGATG | 2 cut(s) | 44, 305 |
| FspBI | CTAG | 1 cut(s) | 430 |
| GsuI | CTGGAG | 1 cut(s) | 179 |
| HapII | CCGG | 1 cut(s) | 54 |
| Hin1II | CATG | 4 cut(s) | 73, 259, 302, 310 |
| HinfI | GANTC | 3 cut(s) | 100, 123, 178 |
| HpaII | CCGG | 1 cut(s) | 54 |
| Hpy166II | GTNNAC | 2 cut(s) | 99, 285 |
| Hpy188I | TCNGA | 4 cut(s) | 117, 183, 248, 380 |
| Hpy188III | TCNNGA | 1 cut(s) | 263 |
| Hpy8I | GTNNAC | 2 cut(s) | 99, 285 |
| HpyCH4III | ACNGT | 1 cut(s) | 207 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyCH4V | TGCA | 4 cut(s) | 19, 170, 310, 389 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 79, 407 |
| HpyF3I | CTNAG | 2 cut(s) | 261, 357 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92II | CATG | 4 cut(s) | 73, 259, 302, 310 |
| KpnI | GGTACC | 1 cut(s) | 345 |
| Kzo9I | GATC | 5 cut(s) | 186, 216, 314, 361, 380 |
| LmnI | GCTCC | 2 cut(s) | 84, 133 |
| LweI | GCATC | 1 cut(s) | 398 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MaeI | CTAG | 1 cut(s) | 430 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MalI | GATC | 5 cut(s) | 188, 218, 316, 363, 382 |
| MboI | GATC | 5 cut(s) | 186, 216, 314, 361, 380 |
| MboII | GAAGA | 3 cut(s) | 286, 289, 396 |
| MfeI | CAATTG | 1 cut(s) | 346 |
| MflI | RGATCY | 2 cut(s) | 186, 380 |
| MhlI | GDGCHC | 1 cut(s) | 306 |
| MluCI | AATT | 1 cut(s) | 346 |
| MlyI | GAGTC | 1 cut(s) | 94 |
| MnlI | CCTC | 7 cut(s) | 22, 29, 177, 214, 261, 273, 352 |
| MseI | TTAA | 2 cut(s) | 372, 426 |
| MspA1I | CMGCKG | 2 cut(s) | 199, 410 |
| MspI | CCGG | 1 cut(s) | 54 |
| MspR9I | CCNGG | 1 cut(s) | 94 |
| MunI | CAATTG | 1 cut(s) | 346 |
| MvaI | CCWGG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 79, 407 |
| NdeII | GATC | 5 cut(s) | 186, 216, 314, 361, 380 |
| NlaIII | CATG | 4 cut(s) | 73, 259, 302, 310 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 161, 343 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PfeI | GAWTC | 2 cut(s) | 123, 178 |
| PleI | GAGTC | 1 cut(s) | 94 |
| PpsI | GAGTC | 1 cut(s) | 94 |
| PpuMI | RGGWCCY | 1 cut(s) | 159 |
| Psp5II | RGGWCCY | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 92 |
| PspGI | CCWGG | 1 cut(s) | 92 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 161, 343 |
| PspPI | GGNCC | 1 cut(s) | 159 |
| PspPPI | RGGWCCY | 1 cut(s) | 159 |
| PstI | CTGCAG | 1 cut(s) | 172 |
| PsuI | RGATCY | 2 cut(s) | 186, 380 |
| PvuII | CAGCTG | 2 cut(s) | 199, 410 |
| RsaI | GTAC | 3 cut(s) | 91, 230, 343 |
| RsaNI | GTAC | 3 cut(s) | 90, 229, 342 |
| SaqAI | TTAA | 2 cut(s) | 372, 426 |
| Sau3AI | GATC | 5 cut(s) | 186, 216, 314, 361, 380 |
| Sau96I | GGNCC | 1 cut(s) | 159 |
| SchI | GAGTC | 1 cut(s) | 94 |
| ScrFI | CCNGG | 1 cut(s) | 94 |
| SduI | GDGCHC | 1 cut(s) | 306 |
| SetI | ASST | 8 cut(s) | 98, 138, 161, 201, 234, 284, 358, 412 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfaNI | GCATC | 1 cut(s) | 398 |
| SfcI | CTRYAG | 1 cut(s) | 168 |
| SinI | GGWCC | 1 cut(s) | 159 |
| Sse9I | AATT | 1 cut(s) | 346 |
| SsiI | CCGC | 1 cut(s) | 82 |
| SspMI | CTAG | 1 cut(s) | 430 |
| StyD4I | CCNGG | 1 cut(s) | 92 |
| TaaI | ACNGT | 1 cut(s) | 207 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TaqI | TCGA | 1 cut(s) | 219 |
| TasI | AATT | 1 cut(s) | 346 |
| TfiI | GAWTC | 2 cut(s) | 123, 178 |
| Tru1I | TTAA | 2 cut(s) | 372, 426 |
| Tru9I | TTAA | 2 cut(s) | 372, 426 |
| TspDTI | ATGAA | 1 cut(s) | 287 |
| TspGWI | ACGGA | 1 cut(s) | 146 |
| VpaK11BI | GGWCC | 1 cut(s) | 159 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XspI | CTAG | 1 cut(s) | 430 |