Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

1922185 .. 1923567

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0014600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTCGGCGACAAGCGCAGGAAATCCAAGCGAGGGTGGGTGTCCATGGGCCTTCTTGCGCCCCTTGGAGGAGGGTTTCCCTCGTTCTCAACCCCCTCCAAAGGCAAAAACTTTCGCCTCCATTCTCTCTGACTCAGTTGAGTCTTCGGTCTCACTTAGCCAACTGCCTGCTCCAGTCATTCGTGGTGACAAGACATACGTCAAAATCAATGAATCTCTCTATCAGGAACAATTGAAAAACTTCAAAACCAATCTTATTGGTAGATTGCTACTGCGAAAAGGTTCTGTCCCAATGAAAACTCCCGTTCTCAAGGGCTTGCTTGCTGATCTATGGAGGCCGGCAGCTCCTTGGCGCTTGGTCCCGCTTGGGAAGGGGTATTTTGACATTCACTTTGGCACCGAAGAGGATCTGCGACGAGTTTGGGGAGGTGGTACATGCACCCTTGCCGATGGGCTCTTTCGACTGGCTCAATGGAAACCTGACTTTGTGCCTGGTGATGTCCTTCCACAAACACATGCCCAACTATGGGTCAGACTGTATGGCTTGAGCCAGGACTACTGGCACCCTCAGCATCTCATGGAAATTGCACGTGGAGTGGGTACGCCCTTGCAGTTAGACAGGGCTACGAAGGAGAGGGAGTTTGGGTACTATGCTCGAGTGCTGGTAGACGTTGATCTTGCTAGCGAATTGCCAACGTCGGTAATGGTTGAGCGTGAGTCACTTTGTTTCCCCATTGAGATTATTTATGAAAACAAGTGTACTCATTGCGGTATGGTTGGGCATATGGTGGATCGTTGTAGACGATTGCATGGTGACAACCCAAAGCCTCGCAATGTTGAGAAACCTTCCACAGTTTCAAGGTCGGTGGTTCGCCAGGAATATAGGGTGAAGGATAAGGTGCAAAGTGACCAAGATCCTATACAAGTTTCCAGGAGAATCAGTGAGCCTTGTGGCAGTGGGAGAGATGGTAGTCCAGGGGGAGTAGCCACTGAGAGACCAGCAACTCCTAATAATGACCCCACGGAGAATCGGTTCGCCATTTTGGCTCAAGAAGTCATTGCGGAGGCTGCCAACGATTTAATTGAGCAATTGGCAGATCAAGTGTATCTTGAGCCAATTAATCAGTCTTCTGACATACAGCATTCAAGCCAGGTTGCGGCTGAGGTTTCAGACGATGAACATGATTCTAGCCCCACCTCCCTAATAGTGACGAAGGGAGATGAAGTAGTTGTTCAAGGGAAGGAAGATGATATGACTATTGTTCTTTCTAAATCGCAGAGAAAGAAGCAAAAGAAGAAAACGCATAAGGAAATAGTCCAGGAGCAAGTTTCTGACCGCTATCCCACCCGCAATAGGGCTCCCACTCCTCGCCTTAACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

460

Amino Acids

51.42

Weight (kDa)

6.81

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	80 - 164	6.9e-06	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	395, 561
AccI	GTMKAC	2 cut(s)	666, 799
AciI	CCGC	6 cut(s)	362, 768, 1061, 1157, 1336, 1348
AclWI	GGATC	3 cut(s)	414, 798, 908
AcvI	CACGTG	1 cut(s)	590
AfaI	GTAC	4 cut(s)	433, 601, 647, 760
AfiI	CCNNNNNNNGG	8 cut(s)	32, 67, 100, 525, 526, 1156, 1353, 1354
AgsI	TTSAA	5 cut(s)	235, 244, 858, 1146, 1235
AjnI	CCWGG	7 cut(s)	490, 549, 873, 929, 973, 1149, 1317
AloI	GAACNNNNNNTCC	2 cut(s)	1016, 1048
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Alw26I	GTCTC	2 cut(s)	154, 988
AlwI	GGATC	3 cut(s)	414, 798, 908
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	2 cut(s)	48, 335
ApeKI	GCWGC	2 cut(s)	341, 1067
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AseI	ATTAAT	1 cut(s)	1119
Asp700I	GAANNNNTTC	3 cut(s)	239, 280, 1031
AspLEI	GCGC	3 cut(s)	17, 60, 354
AspS9I	GGNCC	2 cut(s)	48, 358
AsuHPI	GGTGA	4 cut(s)	197, 506, 824, 898
AsuNHI	GCTAGC	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	395, 561
BanII	GRGCYC	2 cut(s)	456, 1360
BbrPI	CACGTG	1 cut(s)	590
BbsI	GAAGAC	2 cut(s)	135, 1119
BbvCI	CCTCAGC	2 cut(s)	567, 1161
BbvI	GCAGC	2 cut(s)	353, 1054
BccI	CCATC	2 cut(s)	443, 959
BciT130I	CCWGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
BcoDI	GTCTC	2 cut(s)	154, 988
BfaI	CTAG	2 cut(s)	681, 1188
BfoI	RGCGCY	1 cut(s)	355
BglI	GCCNNNNNGGC	1 cut(s)	1043
BisI	GCNGC	3 cut(s)	342, 1068, 1158
BlsI	GCNGC	3 cut(s)	343, 1069, 1159
Bme1390I	CCNGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	654
BmgT120I	GGNCC	2 cut(s)	48, 358
BmiI	GGNNCC	4 cut(s)	360, 397, 563, 1359
BmrFI	CCNGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
BmsI	GCATC	1 cut(s)	580
BmtI	GCTAGC	1 cut(s)	684
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	2 cut(s)	135, 1119
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	2 cut(s)	567, 1161
BpuEI	CTTGAG	4 cut(s)	293, 565, 1032, 1130
BsaAI	YACGTR	1 cut(s)	590
BsaI	GGTCTC	2 cut(s)	154, 988
BsaJI	CCNNGG	5 cut(s)	44, 63, 347, 974, 1020
Bsc4I	CCNNNNNNNGG	8 cut(s)	32, 67, 100, 525, 526, 1156, 1353, 1354
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	3 cut(s)	173, 468, 563
Bse3DI	GCAATG	3 cut(s)	763, 838, 1056
BseBI	CCWGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
BseDI	CCNNGG	5 cut(s)	44, 63, 347, 974, 1020
BseLI	CCNNNNNNNGG	8 cut(s)	32, 67, 100, 525, 526, 1156, 1353, 1354
BseMI	GCAATG	3 cut(s)	763, 838, 1056
BseMII	CTCAG	4 cut(s)	147, 581, 981, 1152
BseNI	ACTGG	3 cut(s)	173, 468, 563
BseRI	GAGGAG	2 cut(s)	83, 1356
BseXI	GCAGC	2 cut(s)	353, 1054
BshFI	GGCC	2 cut(s)	50, 337
BshNI	GGYRCC	2 cut(s)	395, 561
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	272, 344
BslI	CCNNNNNNNGG	8 cut(s)	32, 67, 100, 525, 526, 1156, 1353, 1354
BsmAI	GTCTC	2 cut(s)	154, 988
BsmFI	GGGAC	2 cut(s)	272, 344
BsmI	GAATGC	1 cut(s)	1141
BsnI	GGCC	2 cut(s)	50, 337
Bso31I	GGTCTC	2 cut(s)	154, 988
BsoBI	CYCGRG	1 cut(s)	654
Bsp1286I	GDGCHC	2 cut(s)	456, 1360
Bsp143I	GATC	6 cut(s)	325, 406, 673, 790, 913, 1096
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	6 cut(s)	362, 768, 1061, 1157, 1336, 1348
BspANI	GGCC	2 cut(s)	50, 337
BspCNI	CTCAG	4 cut(s)	146, 580, 982, 1153
BspLI	GGNNCC	4 cut(s)	360, 397, 563, 1359
BspOI	GCTAGC	1 cut(s)	684
BspPI	GGATC	3 cut(s)	414, 798, 908
BspT107I	GGYRCC	2 cut(s)	395, 561
BspTNI	GGTCTC	2 cut(s)	154, 988
BsrDI	GCAATG	3 cut(s)	763, 838, 1056
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	3 cut(s)	173, 468, 563
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	5 cut(s)	44, 63, 347, 974, 1020
BssMI	GATC	6 cut(s)	325, 406, 673, 790, 913, 1096
BssT1I	CCWWGG	3 cut(s)	44, 63, 347
Bst2UI	CCWGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
Bst4CI	ACNGT	2 cut(s)	537, 853
Bst6I	CTCTTC	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	5 cut(s)	168, 317, 321, 339, 682
BstDEI	CTNAG	5 cut(s)	133, 155, 567, 990, 1161
BstDSI	CCRYGG	2 cut(s)	44, 1020
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	3 cut(s)	17, 60, 354
BstKTI	GATC	6 cut(s)	328, 409, 676, 793, 916, 1099
BstMAI	GTCTC	2 cut(s)	154, 988
BstMBI	GATC	6 cut(s)	325, 406, 673, 790, 913, 1096
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 568, 1043, 1067
BstNI	CCWGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
BstNSI	RCATGY	2 cut(s)	438, 518
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	7 cut(s)	490, 549, 873, 929, 973, 1149, 1317
BstV1I	GCAGC	2 cut(s)	353, 1054
BstV2I	GAAGAC	2 cut(s)	135, 1119
BstX2I	RGATCY	2 cut(s)	406, 913
BstYI	RGATCY	2 cut(s)	406, 913
BsuRI	GGCC	2 cut(s)	50, 337
BtgI	CCRYGG	2 cut(s)	44, 1020
BtsI	GCAGTG	1 cut(s)	961
BtsIMutI	CAGTG	3 cut(s)	946, 961, 987
Cac8I	GCNNGC	5 cut(s)	168, 317, 321, 339, 682
CfoI	GCGC	3 cut(s)	17, 60, 354
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	48, 358
Csp6I	GTAC	4 cut(s)	432, 600, 646, 759
CspCI	CAANNNNNGTGG	2 cut(s)	846, 881
CviAII	CATG	6 cut(s)	45, 435, 515, 577, 809, 1181
CviQI	GTAC	4 cut(s)	432, 600, 646, 759
DdeI	CTNAG	5 cut(s)	133, 155, 567, 990, 1161
DpnI	GATC	6 cut(s)	327, 408, 675, 792, 915, 1098
DpnII	GATC	6 cut(s)	325, 406, 673, 790, 913, 1096
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	3 cut(s)	44, 63, 347
Eco24I	GRGCYC	2 cut(s)	456, 1360
Eco31I	GGTCTC	2 cut(s)	154, 988
Eco47I	GGWCC	1 cut(s)	358
Eco72I	CACGTG	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	654
EcoRII	CCWGG	7 cut(s)	490, 549, 873, 929, 973, 1149, 1317
EcoT14I	CCWWGG	3 cut(s)	44, 63, 347
EcoT38I	GRGCYC	2 cut(s)	456, 1360
ErhI	CCWWGG	3 cut(s)	44, 63, 347
FaeI	CATG	6 cut(s)	48, 438, 518, 580, 812, 1184
FalI	AAGNNNNNCTT	2 cut(s)	1092, 1124
FaqI	GGGAC	2 cut(s)	272, 344
FatI	CATG	6 cut(s)	44, 434, 514, 576, 808, 1180
FauI	CCCGC	2 cut(s)	369, 1355
FauNDI	CATATG	1 cut(s)	783
FblI	GTMKAC	2 cut(s)	666, 799
Fnu4HI	GCNGC	3 cut(s)	342, 1068, 1158
FriOI	GRGCYC	2 cut(s)	456, 1360
Fsp4HI	GCNGC	3 cut(s)	342, 1068, 1158
FspBI	CTAG	2 cut(s)	681, 1188
GlaI	GCGC	3 cut(s)	16, 59, 353
GluI	GCNGC	3 cut(s)	342, 1068, 1158
GsuI	CTGGAG	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	2 cut(s)	50, 337
HapII	CCGG	1 cut(s)	338
HhaI	GCGC	3 cut(s)	17, 60, 354
Hin1II	CATG	6 cut(s)	48, 438, 518, 580, 812, 1184
Hin6I	GCGC	3 cut(s)	15, 58, 352
HinP1I	GCGC	3 cut(s)	15, 58, 352
HinfI	GANTC	7 cut(s)	131, 140, 212, 716, 936, 1027, 1184
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	4 cut(s)	197, 506, 824, 898
Hpy166II	GTNNAC	3 cut(s)	667, 759, 800
Hpy188I	TCNGA	5 cut(s)	130, 533, 1132, 1171, 1333
Hpy188III	TCNNGA	3 cut(s)	224, 1049, 1109
Hpy8I	GTNNAC	3 cut(s)	667, 759, 800
Hpy99I	CGWCG	2 cut(s)	417, 700
HpyAV	CCTTC	8 cut(s)	61, 364, 512, 622, 855, 883, 1207, 1234
HpyCH4III	ACNGT	2 cut(s)	537, 853
HpyCH4IV	ACGT	4 cut(s)	198, 589, 669, 695
HpyCH4V	TGCA	5 cut(s)	438, 587, 610, 808, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 568, 1043, 1067
HpyF3I	CTNAG	5 cut(s)	133, 155, 567, 990, 1161
HpySE526I	ACGT	4 cut(s)	198, 589, 669, 695
Hsp92II	CATG	6 cut(s)	48, 438, 518, 580, 812, 1184
HspAI	GCGC	3 cut(s)	15, 58, 352
KroI	GCCGGC	1 cut(s)	337
KroNI	GCCGGC	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	325, 406, 673, 790, 913, 1096
LmnI	GCTCC	4 cut(s)	175, 349, 1321, 1363
Lsp1109I	GCAGC	2 cut(s)	353, 1054
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	681, 1188
MaeII	ACGT	4 cut(s)	198, 589, 669, 695
MaeIII	GTNAC	5 cut(s)	185, 717, 812, 905, 1207
MalI	GATC	6 cut(s)	327, 408, 675, 792, 915, 1098
MboI	GATC	6 cut(s)	325, 406, 673, 790, 913, 1096
MboII	GAAGA	5 cut(s)	135, 413, 1119, 1256, 1306
MfeI	CAATTG	2 cut(s)	230, 1088
MflI	RGATCY	2 cut(s)	406, 913
MhlI	GDGCHC	2 cut(s)	456, 1360
MluCI	AATT	6 cut(s)	230, 582, 686, 1080, 1088, 1116
MlyI	GAGTC	3 cut(s)	125, 149, 725
MroNI	GCCGGC	1 cut(s)	337
MroXI	GAANNNNTTC	3 cut(s)	239, 280, 1031
MseI	TTAA	3 cut(s)	1079, 1119, 1374
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
MunI	CAATTG	2 cut(s)	230, 1088
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
MwoI	GCNNNNNNNGC	4 cut(s)	14, 568, 1043, 1067
NaeI	GCCGGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	783
NdeII	GATC	6 cut(s)	325, 406, 673, 790, 913, 1096
NgoMIV	GCCGGC	1 cut(s)	337
NheI	GCTAGC	1 cut(s)	680
NlaIII	CATG	6 cut(s)	48, 438, 518, 580, 812, 1184
NlaIV	GGNNCC	4 cut(s)	360, 397, 563, 1359
NmuCI	GTSAC	5 cut(s)	185, 717, 812, 905, 1207
NspI	RCATGY	2 cut(s)	438, 518
PaeR7I	CTCGAG	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	799
PctI	GAATGC	1 cut(s)	1141
PdiI	GCCGGC	1 cut(s)	339
PdmI	GAANNNNTTC	3 cut(s)	239, 280, 1031
PfeI	GAWTC	4 cut(s)	212, 936, 1027, 1184
PfoI	TCCNGGA	2 cut(s)	929, 1317
PkrI	GCNGC	3 cut(s)	343, 1069, 1159
PleI	GAGTC	3 cut(s)	125, 148, 724
PmaCI	CACGTG	1 cut(s)	590
PmlI	CACGTG	1 cut(s)	590
PpsI	GAGTC	3 cut(s)	125, 148, 724
Ppu21I	YACGTR	1 cut(s)	590
PshAI	GACNNNNGTC	1 cut(s)	197
PshBI	ATTAAT	1 cut(s)	1119
Psp6I	CCWGG	7 cut(s)	490, 549, 873, 929, 973, 1149, 1317
PspCI	CACGTG	1 cut(s)	590
PspGI	CCWGG	7 cut(s)	490, 549, 873, 929, 973, 1149, 1317
PspN4I	GGNNCC	4 cut(s)	360, 397, 563, 1359
PspPI	GGNCC	2 cut(s)	48, 358
PspXI	VCTCGAGB	1 cut(s)	654
PsuI	RGATCY	2 cut(s)	406, 913
RsaI	GTAC	4 cut(s)	433, 601, 647, 760
RsaNI	GTAC	4 cut(s)	432, 600, 646, 759
SaqAI	TTAA	3 cut(s)	1079, 1119, 1374
SatI	GCNGC	3 cut(s)	342, 1068, 1158
Sau3AI	GATC	6 cut(s)	325, 406, 673, 790, 913, 1096
Sau96I	GGNCC	2 cut(s)	48, 358
SchI	GAGTC	3 cut(s)	125, 149, 725
ScrFI	CCNGG	7 cut(s)	492, 551, 875, 931, 975, 1151, 1319
SduI	GDGCHC	2 cut(s)	456, 1360
SfaNI	GCATC	1 cut(s)	580
Sfr274I	CTCGAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	358
SlaI	CTCGAG	1 cut(s)	654
SmlI	CTYRAG	5 cut(s)	308, 544, 654, 1047, 1109
SmoI	CTYRAG	5 cut(s)	308, 544, 654, 1047, 1109
Sse9I	AATT	6 cut(s)	230, 582, 686, 1080, 1088, 1116
SsiI	CCGC	6 cut(s)	362, 768, 1061, 1157, 1336, 1348
SspMI	CTAG	2 cut(s)	681, 1188
StyD4I	CCNGG	7 cut(s)	490, 549, 873, 929, 973, 1149, 1317
StyI	CCWWGG	3 cut(s)	44, 63, 347
TaaI	ACNGT	2 cut(s)	537, 853
TaiI	ACGT	4 cut(s)	201, 592, 672, 698
TaqI	TCGA	2 cut(s)	460, 655
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	6 cut(s)	230, 582, 686, 1080, 1088, 1116
TatI	WGTACW	1 cut(s)	758
TauI	GCSGC	1 cut(s)	1160
TfiI	GAWTC	4 cut(s)	212, 936, 1027, 1184
Tru1I	TTAA	3 cut(s)	1079, 1119, 1374
Tru9I	TTAA	3 cut(s)	1079, 1119, 1374
TscAI	CASTG	3 cut(s)	946, 961, 994
TseFI	GTSAC	5 cut(s)	185, 717, 812, 905, 1207
TseI	GCWGC	2 cut(s)	341, 1067
Tsp45I	GTSAC	5 cut(s)	185, 717, 812, 905, 1207
TspDTI	ATGAA	5 cut(s)	225, 308, 762, 1191, 1236
TspGWI	ACGGA	1 cut(s)	1037
TspRI	CASTG	3 cut(s)	946, 961, 994
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	1119
XceI	RCATGY	2 cut(s)	438, 518
XhoI	CTCGAG	1 cut(s)	654
XmiI	GTMKAC	2 cut(s)	666, 799
XmnI	GAANNNNTTC	3 cut(s)	239, 280, 1031
XspI	CTAG	2 cut(s)	681, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.