Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

10579445 .. 10580038

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAACCACAAACCCAACAACCAACCAAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGCAGGTGGAGCAGTACCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAATGAGCTTTTCTACAACAAGGTAGTTAGGTCCCTAACAGCAAAGCAGATTCAGAGGATCTGTCTCCAACTGAAATGGTACGGAAATATCAAGAGCAGGAACGTCTATTATTGGTTCGGGAACCACAGAGCTCAGGAGAAACAGAAGAAGAAGATCACTTCGGATGTTCATGTGCCCATGCAAAGATCATGGCTTGTTGGTAATGGTAATGGTACTAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTTGTGTGATGATTGCTTTTAACAGGAAGATGGGAAACTATGGTGGTTATGGATCTATGAACACGGAGATTGAAACACTTCCTCTGTTCCCCATTCATGGTGAGGACATGAAGACTACTTCCGAGGGAGGTGGCGGCTACAACGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

197

Amino Acids

21.99

Weight (kDa)

9.56

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	8.6e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	69
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	4 cut(s)	194, 369, 388, 469
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	3 cut(s)	91, 209, 343
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	4 cut(s)	136, 260, 410, 577
AluI	AGCT	4 cut(s)	136, 260, 410, 577
Alw21I	GWGCWC	2 cut(s)	262, 579
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	194, 369, 388, 469
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	306
BanII	GRGCYC	2 cut(s)	262, 579
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	262, 579
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 433
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	592
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	51, 544
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	2 cut(s)	52, 545
Bme1390I	CCNGG	2 cut(s)	55, 94
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	3 cut(s)	6, 161, 251
BmrFI	CCNGG	2 cut(s)	55, 94
BmsI	GCATC	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	27, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse21I	CCTNAGG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	27, 531
BseGI	GGATG	2 cut(s)	37, 298
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	3 cut(s)	275, 348, 592
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	262, 579
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	262, 306, 579
Bsp143I	GATC	7 cut(s)	112, 186, 282, 314, 361, 380, 461
Bsp1720I	GCTNAGC	1 cut(s)	578
BspACI	CCGC	1 cut(s)	543
BspCNI	CTCAG	3 cut(s)	274, 349, 591
BspLI	GGNNCC	3 cut(s)	6, 161, 251
BspMI	ACCTGC	1 cut(s)	69
BspPI	GGATC	4 cut(s)	194, 369, 388, 469
BssECI	CCNNGG	2 cut(s)	27, 531
BssMI	GATC	7 cut(s)	112, 186, 282, 314, 361, 380, 461
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	554
BstDEI	CTNAG	3 cut(s)	261, 357, 578
BstF5I	GGATG	2 cut(s)	37, 298
BstKTI	GATC	7 cut(s)	115, 189, 285, 317, 364, 383, 464
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	112, 186, 282, 314, 361, 380, 461
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 407
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	53, 92
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	3 cut(s)	186, 380, 461
BstYI	RGATCY	3 cut(s)	186, 380, 461
Bsu36I	CCTNAGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	37, 298
BveI	ACCTGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	90, 208, 342
CviAII	CATG	6 cut(s)	70, 299, 307, 318, 506, 517
CviJI	RGCY	9 cut(s)	53, 136, 260, 322, 410, 546, 558, 577, 582
CviKI_1	RGCY	9 cut(s)	53, 136, 260, 322, 410, 546, 558, 577, 582
CviQI	GTAC	3 cut(s)	90, 208, 342
DdeI	CTNAG	3 cut(s)	261, 357, 578
DpnI	GATC	7 cut(s)	114, 188, 284, 316, 363, 382, 463
DpnII	GATC	7 cut(s)	112, 186, 282, 314, 361, 380, 461
Ecl136II	GAGCTC	2 cut(s)	260, 577
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	262, 579
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	2 cut(s)	260, 577
Eco57I	CTGAAG	1 cut(s)	390
Eco81I	CCTNAGG	1 cut(s)	357
EcoICRI	GAGCTC	2 cut(s)	260, 577
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	262, 579
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	6 cut(s)	73, 302, 310, 321, 509, 520
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	6 cut(s)	69, 298, 306, 317, 505, 516
Fnu4HI	GCNGC	2 cut(s)	51, 544
FokI	GGATG	2 cut(s)	44, 305
FriOI	GRGCYC	2 cut(s)	262, 579
Fsp4HI	GCNGC	2 cut(s)	51, 544
FspBI	CTAG	1 cut(s)	592
GluI	GCNGC	2 cut(s)	51, 544
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	6 cut(s)	73, 302, 310, 321, 509, 520
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	5 cut(s)	117, 183, 292, 380, 532
Hpy188III	TCNNGA	3 cut(s)	220, 247, 263
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	78, 310, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 407
HpyF3I	CTNAG	3 cut(s)	261, 357, 578
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	73, 302, 310, 321, 509, 520
Kzo9I	GATC	7 cut(s)	112, 186, 282, 314, 361, 380, 461
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	8 cut(s)	64, 67, 79, 106, 211, 248, 369, 418
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	398
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	1 cut(s)	592
MaeII	ACGT	1 cut(s)	231
MalI	GATC	7 cut(s)	114, 188, 284, 316, 363, 382, 463
MboI	GATC	7 cut(s)	112, 186, 282, 314, 361, 380, 461
MboII	GAAGA	7 cut(s)	286, 289, 292, 375, 396, 448, 532
MflI	RGATCY	3 cut(s)	186, 380, 461
MhlI	GDGCHC	3 cut(s)	262, 306, 579
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	29, 137, 177, 352, 501, 505, 526, 530, 593
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	2 cut(s)	372, 429
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	55, 94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	84, 407
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	112, 186, 282, 314, 361, 380, 461
NlaIII	CATG	6 cut(s)	73, 302, 310, 321, 509, 520
NlaIV	GGNNCC	3 cut(s)	6, 161, 251
NspI	RCATGY	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	123, 178
PkrI	GCNGC	2 cut(s)	52, 545
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	2 cut(s)	262, 579
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	3 cut(s)	6, 161, 251
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsuI	RGATCY	3 cut(s)	186, 380, 461
RsaI	GTAC	3 cut(s)	91, 209, 343
RsaNI	GTAC	3 cut(s)	90, 208, 342
SacI	GAGCTC	2 cut(s)	262, 579
SaqAI	TTAA	2 cut(s)	372, 429
SatI	GCNGC	2 cut(s)	51, 544
Sau3AI	GATC	7 cut(s)	112, 186, 282, 314, 361, 380, 461
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	55, 94
SduI	GDGCHC	3 cut(s)	262, 306, 579
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	398
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	1 cut(s)	592
SstI	GAGCTC	2 cut(s)	262, 579
StyD4I	CCNGG	2 cut(s)	53, 92
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	554
TaiI	ACGT	1 cut(s)	234
TasI	AATT	1 cut(s)	346
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	123, 178
Tru1I	TTAA	2 cut(s)	372, 429
Tru9I	TTAA	2 cut(s)	372, 429
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	287, 482, 494, 533
TspGWI	ACGGA	2 cut(s)	225, 488
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.