Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NAP | PF00956 | 52 - 293 | 7.8e-89 | Nucleosome assembly protein (NAP) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 462 |
| AccII | CGCG | 1 cut(s) | 86 |
| AccIII | TCCGGA | 2 cut(s) | 150, 1084 |
| AciI | CCGC | 1 cut(s) | 48 |
| AclWI | GGATC | 1 cut(s) | 679 |
| AcoI | YGGCCR | 1 cut(s) | 33 |
| AcuI | CTGAAG | 6 cut(s) | 330, 345, 372, 473, 723, 771 |
| AcyI | GRCGYC | 1 cut(s) | 459 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 668, 754 |
| AflII | CTTAAG | 2 cut(s) | 89, 650 |
| AgsI | TTSAA | 6 cut(s) | 55, 305, 391, 496, 532, 724 |
| AjnI | CCWGG | 3 cut(s) | 66, 863, 885 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 512, 544 |
| AluBI | AGCT | 6 cut(s) | 101, 239, 308, 440, 646, 717 |
| AluI | AGCT | 6 cut(s) | 101, 239, 308, 440, 646, 717 |
| Alw21I | GWGCWC | 3 cut(s) | 408, 442, 1051 |
| Alw26I | GTCTC | 2 cut(s) | 197, 865 |
| AlwI | GGATC | 1 cut(s) | 679 |
| Aor13HI | TCCGGA | 2 cut(s) | 150, 1084 |
| AoxI | GGCC | 3 cut(s) | 33, 1006, 1079 |
| ApeKI | GCWGC | 2 cut(s) | 227, 779 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 582 |
| AspLEI | GCGC | 2 cut(s) | 8, 88 |
| AsuC2I | CCSGG | 1 cut(s) | 624 |
| AsuHPI | GGTGA | 2 cut(s) | 1070, 1085 |
| AxyI | CCTNAGG | 1 cut(s) | 486 |
| BanII | GRGCYC | 1 cut(s) | 442 |
| BbsI | GAAGAC | 3 cut(s) | 360, 557, 936 |
| Bbv12I | GWGCWC | 3 cut(s) | 408, 442, 1051 |
| BbvCI | CCTCAGC | 2 cut(s) | 128, 783 |
| BbvI | GCAGC | 2 cut(s) | 214, 766 |
| BccI | CCATC | 2 cut(s) | 796, 1055 |
| BciT130I | CCWGG | 3 cut(s) | 68, 865, 887 |
| BciVI | GTATCC | 1 cut(s) | 630 |
| BcnI | CCSGG | 1 cut(s) | 624 |
| BcoDI | GTCTC | 2 cut(s) | 197, 865 |
| BfaI | CTAG | 2 cut(s) | 240, 471 |
| BfoI | RGCGCY | 1 cut(s) | 9 |
| BfrI | CTTAAG | 2 cut(s) | 89, 650 |
| BfuI | GTATCC | 1 cut(s) | 630 |
| BglII | AGATCT | 1 cut(s) | 763 |
| BisI | GCNGC | 2 cut(s) | 228, 780 |
| BlsI | GCNGC | 2 cut(s) | 229, 781 |
| Bme1390I | CCNGG | 4 cut(s) | 68, 624, 865, 887 |
| BmrFI | CCNGG | 4 cut(s) | 68, 624, 865, 887 |
| BmsI | GCATC | 4 cut(s) | 337, 338, 766, 985 |
| BpiI | GAAGAC | 3 cut(s) | 360, 557, 936 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 214, 246 |
| BpmI | CTGGAG | 2 cut(s) | 776, 894 |
| Bpu10I | CCTNAGC | 2 cut(s) | 128, 783 |
| BpuEI | CTTGAG | 2 cut(s) | 521, 608 |
| BpuMI | CCSGG | 1 cut(s) | 624 |
| Bsa29I | ATCGAT | 1 cut(s) | 567 |
| BsaBI | GATNNNNATC | 1 cut(s) | 762 |
| BsaHI | GRCGYC | 1 cut(s) | 459 |
| BsaI | GGTCTC | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 1 cut(s) | 411 |
| BsaWI | WCCGGW | 2 cut(s) | 150, 1084 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 630, 660 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 668, 754 |
| Bse1I | ACTGG | 2 cut(s) | 298, 877 |
| Bse21I | CCTNAGG | 1 cut(s) | 486 |
| Bse8I | GATNNNNATC | 1 cut(s) | 762 |
| BseAI | TCCGGA | 2 cut(s) | 150, 1084 |
| BseBI | CCWGG | 3 cut(s) | 68, 865, 887 |
| BseCI | ATCGAT | 1 cut(s) | 567 |
| BseDI | CCNNGG | 1 cut(s) | 411 |
| BseJI | GATNNNNATC | 1 cut(s) | 762 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 668, 754 |
| BseMII | CTCAG | 2 cut(s) | 142, 774 |
| BseNI | ACTGG | 2 cut(s) | 298, 877 |
| BseRI | GAGGAG | 3 cut(s) | 233, 428, 968 |
| BseXI | GCAGC | 2 cut(s) | 214, 766 |
| Bsh1236I | CGCG | 1 cut(s) | 86 |
| BshFI | GGCC | 3 cut(s) | 35, 1008, 1081 |
| BshVI | ATCGAT | 1 cut(s) | 567 |
| BsiHKAI | GWGCWC | 3 cut(s) | 408, 442, 1051 |
| BsiSI | CCGG | 3 cut(s) | 151, 623, 1085 |
| BslFI | GGGAC | 2 cut(s) | 731, 851 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 668, 754 |
| BsmAI | GTCTC | 2 cut(s) | 197, 865 |
| BsmFI | GGGAC | 2 cut(s) | 731, 851 |
| BsmI | GAATGC | 1 cut(s) | 388 |
| BsnI | GGCC | 3 cut(s) | 35, 1008, 1081 |
| Bso31I | GGTCTC | 1 cut(s) | 197 |
| Bsp1286I | GDGCHC | 3 cut(s) | 408, 442, 1051 |
| Bsp13I | TCCGGA | 2 cut(s) | 150, 1084 |
| Bsp143I | GATC | 5 cut(s) | 37, 564, 671, 763, 843 |
| BspACI | CCGC | 1 cut(s) | 48 |
| BspANI | GGCC | 3 cut(s) | 35, 1008, 1081 |
| BspCNI | CTCAG | 2 cut(s) | 141, 775 |
| BspDI | ATCGAT | 1 cut(s) | 567 |
| BspEI | TCCGGA | 2 cut(s) | 150, 1084 |
| BspFNI | CGCG | 1 cut(s) | 86 |
| BspPI | GGATC | 1 cut(s) | 679 |
| BspTI | CTTAAG | 2 cut(s) | 89, 650 |
| BspTNI | GGTCTC | 1 cut(s) | 197 |
| BsrI | ACTGG | 2 cut(s) | 298, 877 |
| BssECI | CCNNGG | 1 cut(s) | 411 |
| BssMI | GATC | 5 cut(s) | 37, 564, 671, 763, 843 |
| BssNI | GRCGYC | 1 cut(s) | 459 |
| Bst2UI | CCWGG | 3 cut(s) | 68, 865, 887 |
| Bst4CI | ACNGT | 2 cut(s) | 541, 1101 |
| Bst6I | CTCTTC | 3 cut(s) | 54, 336, 747 |
| BstACI | GRCGYC | 1 cut(s) | 459 |
| BstAFI | CTTAAG | 2 cut(s) | 89, 650 |
| BstDEI | CTNAG | 5 cut(s) | 128, 170, 486, 663, 783 |
| BstFNI | CGCG | 1 cut(s) | 86 |
| BstH2I | RGCGCY | 1 cut(s) | 9 |
| BstHHI | GCGC | 2 cut(s) | 8, 88 |
| BstKTI | GATC | 5 cut(s) | 40, 567, 674, 766, 846 |
| BstMAI | GTCTC | 2 cut(s) | 197, 865 |
| BstMBI | GATC | 5 cut(s) | 37, 564, 671, 763, 843 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 236, 305 |
| BstNI | CCWGG | 3 cut(s) | 68, 865, 887 |
| BstNSI | RCATGY | 2 cut(s) | 116, 857 |
| BstSCI | CCNGG | 4 cut(s) | 66, 622, 863, 885 |
| BstUI | CGCG | 1 cut(s) | 86 |
| BstV1I | GCAGC | 2 cut(s) | 214, 766 |
| BstV2I | GAAGAC | 3 cut(s) | 360, 557, 936 |
| BstX2I | RGATCY | 1 cut(s) | 763 |
| BstYI | RGATCY | 1 cut(s) | 763 |
| Bsu15I | ATCGAT | 1 cut(s) | 567 |
| Bsu36I | CCTNAGG | 1 cut(s) | 486 |
| BsuI | GTATCC | 1 cut(s) | 630 |
| BsuRI | GGCC | 3 cut(s) | 35, 1008, 1081 |
| BsuTUI | ATCGAT | 1 cut(s) | 567 |
| CfoI | GCGC | 2 cut(s) | 8, 88 |
| ClaI | ATCGAT | 1 cut(s) | 567 |
| CviAII | CATG | 6 cut(s) | 31, 113, 191, 562, 854, 904 |
| DdeI | CTNAG | 5 cut(s) | 128, 170, 486, 663, 783 |
| DpnI | GATC | 5 cut(s) | 39, 566, 673, 765, 845 |
| DpnII | GATC | 5 cut(s) | 37, 564, 671, 763, 843 |
| EaeI | YGGCCR | 1 cut(s) | 33 |
| Eam1104I | CTCTTC | 3 cut(s) | 54, 336, 747 |
| EarI | CTCTTC | 3 cut(s) | 54, 336, 747 |
| Ecl136II | GAGCTC | 1 cut(s) | 440 |
| Eco147I | AGGCCT | 1 cut(s) | 1081 |
| Eco24I | GRGCYC | 1 cut(s) | 442 |
| Eco31I | GGTCTC | 1 cut(s) | 197 |
| Eco53kI | GAGCTC | 1 cut(s) | 440 |
| Eco57I | CTGAAG | 6 cut(s) | 330, 345, 372, 473, 723, 771 |
| Eco81I | CCTNAGG | 1 cut(s) | 486 |
| EcoICRI | GAGCTC | 1 cut(s) | 440 |
| EcoRII | CCWGG | 3 cut(s) | 66, 863, 885 |
| EcoT22I | ATGCAT | 1 cut(s) | 388 |
| EcoT38I | GRGCYC | 1 cut(s) | 442 |
| FaeI | CATG | 6 cut(s) | 34, 116, 194, 565, 857, 907 |
| FaqI | GGGAC | 2 cut(s) | 731, 851 |
| FatI | CATG | 6 cut(s) | 30, 112, 190, 561, 853, 903 |
| Fnu4HI | GCNGC | 2 cut(s) | 228, 780 |
| FriOI | GRGCYC | 1 cut(s) | 442 |
| Fsp4HI | GCNGC | 2 cut(s) | 228, 780 |
| FspBI | CTAG | 2 cut(s) | 240, 471 |
| GlaI | GCGC | 2 cut(s) | 7, 87 |
| GluI | GCNGC | 2 cut(s) | 228, 780 |
| GsuI | CTGGAG | 2 cut(s) | 776, 894 |
| HaeII | RGCGCY | 1 cut(s) | 9 |
| HaeIII | GGCC | 3 cut(s) | 35, 1008, 1081 |
| HapII | CCGG | 3 cut(s) | 151, 623, 1085 |
| HhaI | GCGC | 2 cut(s) | 8, 88 |
| Hin1I | GRCGYC | 1 cut(s) | 459 |
| Hin1II | CATG | 6 cut(s) | 34, 116, 194, 565, 857, 907 |
| Hin6I | GCGC | 2 cut(s) | 6, 86 |
| HinP1I | GCGC | 2 cut(s) | 6, 86 |
| HincII | GTYRAC | 2 cut(s) | 828, 1067 |
| HindII | GTYRAC | 2 cut(s) | 828, 1067 |
| HinfI | GANTC | 3 cut(s) | 75, 492, 796 |
| HpaII | CCGG | 3 cut(s) | 151, 623, 1085 |
| HphI | GGTGA | 2 cut(s) | 1070, 1085 |
| Hpy166II | GTNNAC | 4 cut(s) | 737, 828, 870, 1067 |
| Hpy188I | TCNGA | 5 cut(s) | 249, 412, 453, 801, 1035 |
| Hpy8I | GTNNAC | 4 cut(s) | 737, 828, 870, 1067 |
| Hpy99I | CGWCG | 1 cut(s) | 926 |
| HpyCH4III | ACNGT | 2 cut(s) | 541, 1101 |
| HpyCH4IV | ACGT | 1 cut(s) | 459 |
| HpyCH4V | TGCA | 4 cut(s) | 386, 857, 998, 1092 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 236, 305 |
| HpyF3I | CTNAG | 5 cut(s) | 128, 170, 486, 663, 783 |
| HpySE526I | ACGT | 1 cut(s) | 459 |
| Hsp92I | GRCGYC | 1 cut(s) | 459 |
| Hsp92II | CATG | 6 cut(s) | 34, 116, 194, 565, 857, 907 |
| HspAI | GCGC | 2 cut(s) | 6, 86 |
| Kpn2I | TCCGGA | 2 cut(s) | 150, 1084 |
| Kzo9I | GATC | 5 cut(s) | 37, 564, 671, 763, 843 |
| LmnI | GCTCC | 2 cut(s) | 437, 651 |
| Lsp1109I | GCAGC | 2 cut(s) | 214, 766 |
| LweI | GCATC | 4 cut(s) | 337, 338, 766, 985 |
| MaeI | CTAG | 2 cut(s) | 240, 471 |
| MaeII | ACGT | 1 cut(s) | 459 |
| MaeIII | GTNAC | 3 cut(s) | 278, 289, 316 |
| MalI | GATC | 5 cut(s) | 39, 566, 673, 765, 845 |
| MboI | GATC | 5 cut(s) | 37, 564, 671, 763, 843 |
| MfeI | CAATTG | 1 cut(s) | 597 |
| MflI | RGATCY | 1 cut(s) | 763 |
| MhlI | GDGCHC | 3 cut(s) | 408, 442, 1051 |
| MluCI | AATT | 2 cut(s) | 197, 597 |
| Mph1103I | ATGCAT | 1 cut(s) | 388 |
| MroI | TCCGGA | 2 cut(s) | 150, 1084 |
| MroXI | GAANNNNTTC | 1 cut(s) | 582 |
| MseI | TTAA | 3 cut(s) | 90, 635, 651 |
| MslI | CAYNNNNRTG | 1 cut(s) | 29 |
| MspCI | CTTAAG | 2 cut(s) | 89, 650 |
| MspI | CCGG | 3 cut(s) | 151, 623, 1085 |
| MspR9I | CCNGG | 4 cut(s) | 68, 624, 865, 887 |
| MunI | CAATTG | 1 cut(s) | 597 |
| Mva1269I | GAATGC | 1 cut(s) | 388 |
| MvaI | CCWGG | 3 cut(s) | 68, 865, 887 |
| MvnI | CGCG | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 236, 305 |
| NciI | CCSGG | 1 cut(s) | 624 |
| NdeII | GATC | 5 cut(s) | 37, 564, 671, 763, 843 |
| NlaIII | CATG | 6 cut(s) | 34, 116, 194, 565, 857, 907 |
| NmuCI | GTSAC | 1 cut(s) | 289 |
| NsiI | ATGCAT | 1 cut(s) | 388 |
| NspI | RCATGY | 2 cut(s) | 116, 857 |
| PceI | AGGCCT | 1 cut(s) | 1081 |
| PctI | GAATGC | 1 cut(s) | 388 |
| PdmI | GAANNNNTTC | 1 cut(s) | 582 |
| PfeI | GAWTC | 3 cut(s) | 75, 492, 796 |
| PfoI | TCCNGGA | 2 cut(s) | 622, 885 |
| PkrI | GCNGC | 2 cut(s) | 229, 781 |
| Psp124BI | GAGCTC | 1 cut(s) | 442 |
| Psp6I | CCWGG | 3 cut(s) | 66, 863, 885 |
| PspGI | CCWGG | 3 cut(s) | 66, 863, 885 |
| PsuI | RGATCY | 1 cut(s) | 763 |
| RseI | CAYNNNNRTG | 1 cut(s) | 29 |
| SacI | GAGCTC | 1 cut(s) | 442 |
| SaqAI | TTAA | 3 cut(s) | 90, 635, 651 |
| SatI | GCNGC | 2 cut(s) | 228, 780 |
| Sau3AI | GATC | 5 cut(s) | 37, 564, 671, 763, 843 |
| ScrFI | CCNGG | 4 cut(s) | 68, 624, 865, 887 |
| SduI | GDGCHC | 3 cut(s) | 408, 442, 1051 |
| SfaNI | GCATC | 4 cut(s) | 337, 338, 766, 985 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 29 |
| SmlI | CTYRAG | 4 cut(s) | 89, 500, 587, 650 |
| SmoI | CTYRAG | 4 cut(s) | 89, 500, 587, 650 |
| Sse9I | AATT | 2 cut(s) | 197, 597 |
| SseBI | AGGCCT | 1 cut(s) | 1081 |
| SsiI | CCGC | 1 cut(s) | 48 |
| SspMI | CTAG | 2 cut(s) | 240, 471 |
| SstI | GAGCTC | 1 cut(s) | 442 |
| StuI | AGGCCT | 1 cut(s) | 1081 |
| StyD4I | CCNGG | 4 cut(s) | 66, 622, 863, 885 |
| TaaI | ACNGT | 2 cut(s) | 541, 1101 |
| TaiI | ACGT | 1 cut(s) | 462 |
| TaqI | TCGA | 3 cut(s) | 567, 612, 936 |
| TasI | AATT | 2 cut(s) | 197, 597 |
| TfiI | GAWTC | 3 cut(s) | 75, 492, 796 |
| Tru1I | TTAA | 3 cut(s) | 90, 635, 651 |
| Tru9I | TTAA | 3 cut(s) | 90, 635, 651 |
| TseFI | GTSAC | 1 cut(s) | 289 |
| TseI | GCWGC | 2 cut(s) | 227, 779 |
| Tsp45I | GTSAC | 1 cut(s) | 289 |
| TspDTI | ATGAA | 9 cut(s) | 210, 354, 447, 585, 591, 774, 786, 942, 1017 |
| Vha464I | CTTAAG | 2 cut(s) | 89, 650 |
| XceI | RCATGY | 2 cut(s) | 116, 857 |
| XmnI | GAANNNNTTC | 1 cut(s) | 582 |
| XspI | CTAG | 2 cut(s) | 240, 471 |
| ZraI | GACGTC | 1 cut(s) | 460 |
| Zsp2I | ATGCAT | 1 cut(s) | 388 |