Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

40250323 .. 40250577

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGACGACATATTCGGAGAGTCTCTGAACTTCGAAGAGATCCACATCAAGCAAGGCTTCGACGAAGGCCACAAAGACGGCCTGATAGCCGGAAAAGAGGAGGCCAGGCAAGTGGGCCTCAAGGTGGGCTTCGAGGTCGGCAAGGAGCTCGGGTTCTACAAGGGCTGCGTGGAGGTATGGAACTCTGCGGTCCGGGTCGACCCAACCCGGTTCTCGACCCAACCCGGTTCTCGACCCGGGTCCAGAAGGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

84

Amino Acids

9.31

Weight (kDa)

5.64

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yae1_N	PF09811	19 - 57	9.3e-08	Essential protein Yae1, N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	104
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	34
Ama87I	CYCGRG	2 cut(s)	149, 236
AoxI	GGCC	4 cut(s)	67, 79, 102, 115
ApeKI	GCWGC	1 cut(s)	165
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspS9I	GGNCC	3 cut(s)	115, 190, 240
AsuC2I	CCSGG	5 cut(s)	194, 208, 225, 237, 238
AsuII	TTCGAA	1 cut(s)	33
AvaI	CYCGRG	2 cut(s)	149, 236
AvaII	GGWCC	2 cut(s)	190, 240
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	106
BcnI	CCSGG	5 cut(s)	194, 208, 225, 237, 238
BcoDI	GTCTC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	6 cut(s)	106, 194, 208, 225, 237, 238
Bme18I	GGWCC	2 cut(s)	190, 240
BmeT110I	CYCGRG	2 cut(s)	149, 236
BmgT120I	GGNCC	3 cut(s)	115, 190, 240
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	6 cut(s)	106, 194, 208, 225, 237, 238
BoxI	GACNNNNGTC	1 cut(s)	238
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	5 cut(s)	194, 208, 225, 237, 238
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	236
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	4 cut(s)	69, 81, 104, 117
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	2 cut(s)	149, 236
BsiSI	CCGG	5 cut(s)	90, 193, 208, 225, 237
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	4 cut(s)	69, 81, 104, 117
BsoBI	CYCGRG	2 cut(s)	149, 236
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	4 cut(s)	69, 81, 104, 117
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	33
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	106
BstPAI	GACNNNNGTC	1 cut(s)	238
BstSCI	CCNGG	6 cut(s)	104, 192, 206, 223, 235, 236
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	69, 81, 104, 117
Cfr13I	GGNCC	3 cut(s)	115, 190, 240
Cfr9I	CCCGGG	1 cut(s)	236
CpoI	CGGWCCG	1 cut(s)	190
CspI	CGGWCCG	1 cut(s)	190
CviJI	RGCY	9 cut(s)	57, 69, 81, 89, 104, 117, 129, 148, 165
CviKI_1	RGCY	9 cut(s)	57, 69, 81, 89, 104, 117, 129, 148, 165
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	190, 240
Eco53kI	GAGCTC	1 cut(s)	148
Eco88I	CYCGRG	2 cut(s)	149, 236
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	150
FaiI	YATR	2 cut(s)	11, 178
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 113, 145
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	4 cut(s)	69, 81, 104, 117
HapII	CCGG	5 cut(s)	90, 193, 208, 225, 237
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	5 cut(s)	90, 193, 208, 225, 237
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	17, 27
Hpy188III	TCNNGA	3 cut(s)	214, 231, 243
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	59, 240
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	8 cut(s)	91, 95, 103, 118, 206, 221, 238, 250
Lsp1109I	GCAGC	1 cut(s)	152
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	5 cut(s)	91, 94, 127, 128, 166
MspI	CCGG	5 cut(s)	90, 193, 208, 225, 237
MspR9I	CCNGG	6 cut(s)	106, 194, 208, 225, 237, 238
MvaI	CCWGG	1 cut(s)	106
NciI	CCSGG	5 cut(s)	194, 208, 225, 237, 238
NdeII	GATC	1 cut(s)	39
NlaIV	GGNNCC	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	3 cut(s)	115, 190, 240
PsuI	RGATCY	1 cut(s)	39
Rsr2I	CGGWCCG	1 cut(s)	190
RsrII	CGGWCCG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	197
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	3 cut(s)	115, 190, 240
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	6 cut(s)	106, 194, 208, 225, 237, 238
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	4 cut(s)	126, 138, 150, 177
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	2 cut(s)	190, 240
SmaI	CCCGGG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SsiI	CCGC	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	6 cut(s)	104, 192, 206, 223, 235, 236
TaqI	TCGA	6 cut(s)	33, 60, 132, 198, 215, 232
TseI	GCWGC	1 cut(s)	165
TspMI	CCCGGG	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	190, 240
XmaI	CCCGGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.