AT2G17950

DNA binding protein binding transcription factor transcription regulator

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
7808871 .. 7810811
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17950.1

Sequence Viewer

Length: 879 bp
ATGGAGCCGCCACAGCATCAGCATCATCATCATCAAGCCGACCAAGAAAGCGGCAACAACAACAACAACAAGTCCGGCTCTGGTGGTTACACGTGTCGCCAGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAAAATCCTCAAAGAACTTTACTACAACAATGCAATCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGAGACAGTTCGGAAAGATTGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTCGTGAGCGTCAGAAGAAGAGATTCAACGGAACAAACATGACCACACCATCTTCATCACCCAACTCGGTTATGATGGCGGCTAACGATCATTATCATCCTCTACTTCACCATCATCACGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAACCAAGACCATCATCTCTATCATCATAACAAGCCATATCCCAGCTTCAATAACGGGAATTTAAATCATGCAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGAGTAGCCATGTCTATGGATCTATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGATGGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGAGCAAAGCCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGCCCTTGCGCTTCTCTTGAGCTACGTCTGAACTAG

Protein Analysis

292

Amino Acids

33.19

Weight (kDa)

7.82

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 37 - 97 1.6e-12 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 812
AciI CCGC 3 cut(s) 8, 51, 356
AclI AACGTT 1 cut(s) 432
AclWI GGATC 3 cut(s) 190, 586, 648
AcoI YGGCCR 1 cut(s) 829
AcsI RAATTY 1 cut(s) 499
AcvI CACGTG 1 cut(s) 93
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 2 cut(s) 523, 760
AfiI CCNNNNNNNGG 3 cut(s) 111, 695, 782
AflIII ACRYGT 2 cut(s) 90, 92
AgsI TTSAA 2 cut(s) 304, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 825, 857
AluBI AGCT 3 cut(s) 486, 516, 865
AluI AGCT 3 cut(s) 486, 516, 865
Alw26I GTCTC 2 cut(s) 214, 406
AlwI GGATC 3 cut(s) 190, 586, 648
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 1 cut(s) 829
ApoI RAATTY 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 854
AsuHPI GGTGA 4 cut(s) 171, 327, 377, 797
BalI TGGCCA 1 cut(s) 831
BanI GGYRCC 1 cut(s) 812
BauI CACGAG 2 cut(s) 109, 279
BbrPI CACGTG 1 cut(s) 93
BccI CCATC 6 cut(s) 334, 346, 396, 459, 621, 824
BcoDI GTCTC 2 cut(s) 214, 406
BfaI CTAG 2 cut(s) 701, 877
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 3 cut(s) 8, 52, 357
BlsI GCNGC 3 cut(s) 9, 53, 358
BmiI GGNNCC 3 cut(s) 6, 263, 814
BmsI GCATC 3 cut(s) 25, 31, 727
Bpu10I CCTNAGC 1 cut(s) 517
BsaAI YACGTR 1 cut(s) 93
BsaBI GATNNNNATC 2 cut(s) 369, 741
BsaI GGTCTC 1 cut(s) 406
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 695, 782
Bse1I ACTGG 1 cut(s) 263
Bse8I GATNNNNATC 2 cut(s) 369, 741
BseGI GGATG 2 cut(s) 373, 632
BseJI GATNNNNATC 2 cut(s) 369, 741
BseLI CCNNNNNNNGG 3 cut(s) 111, 695, 782
BseMII CTCAG 2 cut(s) 209, 531
BseNI ACTGG 1 cut(s) 263
BseYI CCCAGC 1 cut(s) 482
BsgI GTGCAG 1 cut(s) 642
BshFI GGCC 1 cut(s) 831
BshNI GGYRCC 1 cut(s) 812
BsiSI CCGG 2 cut(s) 75, 175
BsiWI CGTACG 1 cut(s) 758
BslI CCNNNNNNNGG 3 cut(s) 111, 695, 782
BsmAI GTCTC 2 cut(s) 214, 406
BsnI GGCC 1 cut(s) 831
Bso31I GGTCTC 1 cut(s) 406
Bsp143I GATC 7 cut(s) 190, 195, 204, 364, 578, 640, 790
BspACI CCGC 3 cut(s) 8, 51, 356
BspANI GGCC 1 cut(s) 831
BspCNI CTCAG 2 cut(s) 210, 530
BspLI GGNNCC 3 cut(s) 6, 263, 814
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 3 cut(s) 190, 586, 648
BspT107I GGYRCC 1 cut(s) 812
BspTNI GGTCTC 1 cut(s) 406
BsrI ACTGG 1 cut(s) 263
BssMI GATC 7 cut(s) 190, 195, 204, 364, 578, 640, 790
BssSI CACGAG 2 cut(s) 109, 279
Bst2BI CACGAG 2 cut(s) 109, 279
Bst4CI ACNGT 5 cut(s) 225, 398, 596, 785, 803
Bst6I CTCTTC 2 cut(s) 290, 776
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 2 cut(s) 218, 517
BstEII GGTNACC 1 cut(s) 177
BstF5I GGATG 2 cut(s) 373, 632
BstHHI GCGC 1 cut(s) 854
BstKTI GATC 7 cut(s) 193, 198, 207, 367, 581, 643, 793
BstMAI GTCTC 2 cut(s) 214, 406
BstMBI GATC 7 cut(s) 190, 195, 204, 364, 578, 640, 790
BstMWI GCNNNNNNNGC 2 cut(s) 13, 105
BstPI GGTNACC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 195, 578
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 2 cut(s) 195, 578
BsuRI GGCC 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 750
BtsCI GGATG 2 cut(s) 373, 632
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 514
CaiI CAGNNNCTG 1 cut(s) 524
CfoI GCGC 1 cut(s) 854
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 522, 759
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviAII CATG 6 cut(s) 316, 406, 509, 559, 569, 637
CviQI GTAC 2 cut(s) 522, 759
DdeI CTNAG 2 cut(s) 218, 517
DpnI GATC 7 cut(s) 192, 197, 206, 366, 580, 642, 792
DpnII GATC 7 cut(s) 190, 195, 204, 364, 578, 640, 790
DraI TTTAAA 1 cut(s) 504
DraIII CACNNNGTG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 829
Eam1104I CTCTTC 2 cut(s) 290, 776
EarI CTCTTC 2 cut(s) 290, 776
Eco31I GGTCTC 1 cut(s) 406
Eco72I CACGTG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 177
EcoO65I GGTNACC 1 cut(s) 177
FaeI CATG 6 cut(s) 319, 409, 512, 562, 572, 640
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 6 cut(s) 315, 405, 508, 558, 568, 636
Fnu4HI GCNGC 3 cut(s) 8, 52, 357
FokI GGATG 2 cut(s) 360, 639
Fsp4HI GCNGC 3 cut(s) 8, 52, 357
FspBI CTAG 2 cut(s) 701, 877
GlaI GCGC 1 cut(s) 853
GluI GCNGC 3 cut(s) 8, 52, 357
GsaI CCCAGC 1 cut(s) 486
HaeIII GGCC 1 cut(s) 831
HapII CCGG 2 cut(s) 75, 175
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 854
Hin1II CATG 6 cut(s) 319, 409, 512, 562, 572, 640
Hin6I GCGC 1 cut(s) 852
HinP1I GCGC 1 cut(s) 852
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 1 cut(s) 300
HpaII CCGG 2 cut(s) 75, 175
HphI GGTGA 4 cut(s) 171, 327, 377, 797
Hpy166II GTNNAC 2 cut(s) 117, 430
Hpy188I TCNGA 5 cut(s) 195, 230, 291, 838, 873
Hpy188III TCNNGA 8 cut(s) 199, 265, 281, 701, 713, 746, 820, 860
Hpy8I GTNNAC 2 cut(s) 117, 430
Hpy99I CGWCG 3 cut(s) 127, 130, 759
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 5 cut(s) 225, 398, 596, 785, 803
HpyCH4IV ACGT 6 cut(s) 92, 249, 432, 615, 757, 868
HpyCH4V TGCA 6 cut(s) 170, 212, 409, 512, 659, 781
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 105
HpyF3I CTNAG 2 cut(s) 218, 517
HpySE526I ACGT 6 cut(s) 92, 249, 432, 615, 757, 868
Hsp92II CATG 6 cut(s) 319, 409, 512, 562, 572, 640
HspAI GCGC 1 cut(s) 852
Kzo9I GATC 7 cut(s) 190, 195, 204, 364, 578, 640, 790
LmnI GCTCC 2 cut(s) 4, 130
LweI GCATC 3 cut(s) 25, 31, 727
MaeI CTAG 2 cut(s) 701, 877
MaeII ACGT 6 cut(s) 92, 249, 432, 615, 757, 868
MaeIII GTNAC 2 cut(s) 86, 177
MalI GATC 7 cut(s) 192, 197, 206, 366, 580, 642, 792
MboI GATC 7 cut(s) 190, 195, 204, 364, 578, 640, 790
MflI RGATCY 2 cut(s) 195, 578
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 3 cut(s) 421, 499, 604
MluNI TGGCCA 1 cut(s) 831
MnlI CCTC 7 cut(s) 105, 155, 232, 387, 617, 699, 777
Mox20I TGGCCA 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 299
MscI TGGCCA 1 cut(s) 831
MseI TTAA 4 cut(s) 435, 441, 503, 540
MslI CAYNNNNRTG 2 cut(s) 396, 573
Msp20I TGGCCA 1 cut(s) 831
MspI CCGG 2 cut(s) 75, 175
MwoI GCNNNNNNNGC 2 cut(s) 13, 105
NdeII GATC 7 cut(s) 190, 195, 204, 364, 578, 640, 790
NlaIII CATG 6 cut(s) 319, 409, 512, 562, 572, 640
NlaIV GGNNCC 3 cut(s) 6, 263, 814
NmuCI GTSAC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 300
Pfl23II CGTACG 1 cut(s) 758
PkrI GCNGC 3 cut(s) 9, 53, 358
PmaCI CACGTG 1 cut(s) 93
PmlI CACGTG 1 cut(s) 93
Ppu21I YACGTR 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 432
PspCI CACGTG 1 cut(s) 93
PspEI GGTNACC 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 482
PspLI CGTACG 1 cut(s) 758
PspN4I GGNNCC 3 cut(s) 6, 263, 814
PsrI GAACNNNNNNTAC 2 cut(s) 239, 271
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 2 cut(s) 195, 578
RsaI GTAC 2 cut(s) 523, 760
RsaNI GTAC 2 cut(s) 522, 759
RseI CAYNNNNRTG 2 cut(s) 396, 573
SaqAI TTAA 4 cut(s) 435, 441, 503, 540
SatI GCNGC 3 cut(s) 8, 52, 357
Sau3AI GATC 7 cut(s) 190, 195, 204, 364, 578, 640, 790
SfaNI GCATC 3 cut(s) 25, 31, 727
SmiI ATTTAAAT 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 396, 573
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
Sse9I AATT 3 cut(s) 421, 499, 604
SsiI CCGC 3 cut(s) 8, 51, 356
SspMI CTAG 2 cut(s) 701, 877
SwaI ATTTAAAT 1 cut(s) 504
TaaI ACNGT 5 cut(s) 225, 398, 596, 785, 803
TaiI ACGT 6 cut(s) 95, 252, 435, 618, 760, 871
TaqI TCGA 2 cut(s) 675, 754
TasI AATT 3 cut(s) 421, 499, 604
TauI GCSGC 3 cut(s) 10, 54, 359
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 4 cut(s) 435, 441, 503, 540
Tru9I TTAA 4 cut(s) 435, 441, 503, 540
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 321, 617
TspGWI ACGGA 3 cut(s) 143, 321, 415
TspRI CASTG 1 cut(s) 214
XapI RAATTY 1 cut(s) 499
XbaI TCTAGA 1 cut(s) 700
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 2 cut(s) 701, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.