DNA binding protein binding transcription factor transcription regulator
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 37 - 97 | 1.6e-12 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 424 |
| AccB1I | GGYRCC | 1 cut(s) | 812 |
| AciI | CCGC | 3 cut(s) | 8, 51, 356 |
| AclI | AACGTT | 1 cut(s) | 432 |
| AclWI | GGATC | 3 cut(s) | 190, 586, 648 |
| AcoI | YGGCCR | 1 cut(s) | 829 |
| AcsI | RAATTY | 1 cut(s) | 499 |
| AcvI | CACGTG | 1 cut(s) | 93 |
| AdeI | CACNNNGTG | 1 cut(s) | 114 |
| AfaI | GTAC | 2 cut(s) | 523, 760 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 111, 695, 782 |
| AflIII | ACRYGT | 2 cut(s) | 90, 92 |
| AgsI | TTSAA | 2 cut(s) | 304, 490 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 825, 857 |
| AluBI | AGCT | 3 cut(s) | 486, 516, 865 |
| AluI | AGCT | 3 cut(s) | 486, 516, 865 |
| Alw26I | GTCTC | 2 cut(s) | 214, 406 |
| AlwI | GGATC | 3 cut(s) | 190, 586, 648 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 524 |
| AoxI | GGCC | 1 cut(s) | 829 |
| ApoI | RAATTY | 1 cut(s) | 499 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 299 |
| AspLEI | GCGC | 1 cut(s) | 854 |
| AsuHPI | GGTGA | 4 cut(s) | 171, 327, 377, 797 |
| BalI | TGGCCA | 1 cut(s) | 831 |
| BanI | GGYRCC | 1 cut(s) | 812 |
| BauI | CACGAG | 2 cut(s) | 109, 279 |
| BbrPI | CACGTG | 1 cut(s) | 93 |
| BccI | CCATC | 6 cut(s) | 334, 346, 396, 459, 621, 824 |
| BcoDI | GTCTC | 2 cut(s) | 214, 406 |
| BfaI | CTAG | 2 cut(s) | 701, 877 |
| BfuAI | ACCTGC | 1 cut(s) | 424 |
| BisI | GCNGC | 3 cut(s) | 8, 52, 357 |
| BlsI | GCNGC | 3 cut(s) | 9, 53, 358 |
| BmiI | GGNNCC | 3 cut(s) | 6, 263, 814 |
| BmsI | GCATC | 3 cut(s) | 25, 31, 727 |
| Bpu10I | CCTNAGC | 1 cut(s) | 517 |
| BsaAI | YACGTR | 1 cut(s) | 93 |
| BsaBI | GATNNNNATC | 2 cut(s) | 369, 741 |
| BsaI | GGTCTC | 1 cut(s) | 406 |
| BsaWI | WCCGGW | 1 cut(s) | 174 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 111, 695, 782 |
| Bse1I | ACTGG | 1 cut(s) | 263 |
| Bse8I | GATNNNNATC | 2 cut(s) | 369, 741 |
| BseGI | GGATG | 2 cut(s) | 373, 632 |
| BseJI | GATNNNNATC | 2 cut(s) | 369, 741 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 111, 695, 782 |
| BseMII | CTCAG | 2 cut(s) | 209, 531 |
| BseNI | ACTGG | 1 cut(s) | 263 |
| BseYI | CCCAGC | 1 cut(s) | 482 |
| BsgI | GTGCAG | 1 cut(s) | 642 |
| BshFI | GGCC | 1 cut(s) | 831 |
| BshNI | GGYRCC | 1 cut(s) | 812 |
| BsiSI | CCGG | 2 cut(s) | 75, 175 |
| BsiWI | CGTACG | 1 cut(s) | 758 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 111, 695, 782 |
| BsmAI | GTCTC | 2 cut(s) | 214, 406 |
| BsnI | GGCC | 1 cut(s) | 831 |
| Bso31I | GGTCTC | 1 cut(s) | 406 |
| Bsp143I | GATC | 7 cut(s) | 190, 195, 204, 364, 578, 640, 790 |
| BspACI | CCGC | 3 cut(s) | 8, 51, 356 |
| BspANI | GGCC | 1 cut(s) | 831 |
| BspCNI | CTCAG | 2 cut(s) | 210, 530 |
| BspLI | GGNNCC | 3 cut(s) | 6, 263, 814 |
| BspMI | ACCTGC | 1 cut(s) | 424 |
| BspPI | GGATC | 3 cut(s) | 190, 586, 648 |
| BspT107I | GGYRCC | 1 cut(s) | 812 |
| BspTNI | GGTCTC | 1 cut(s) | 406 |
| BsrI | ACTGG | 1 cut(s) | 263 |
| BssMI | GATC | 7 cut(s) | 190, 195, 204, 364, 578, 640, 790 |
| BssSI | CACGAG | 2 cut(s) | 109, 279 |
| Bst2BI | CACGAG | 2 cut(s) | 109, 279 |
| Bst4CI | ACNGT | 5 cut(s) | 225, 398, 596, 785, 803 |
| Bst6I | CTCTTC | 2 cut(s) | 290, 776 |
| BstBAI | YACGTR | 1 cut(s) | 93 |
| BstC8I | GCNNGC | 1 cut(s) | 514 |
| BstDEI | CTNAG | 2 cut(s) | 218, 517 |
| BstEII | GGTNACC | 1 cut(s) | 177 |
| BstF5I | GGATG | 2 cut(s) | 373, 632 |
| BstHHI | GCGC | 1 cut(s) | 854 |
| BstKTI | GATC | 7 cut(s) | 193, 198, 207, 367, 581, 643, 793 |
| BstMAI | GTCTC | 2 cut(s) | 214, 406 |
| BstMBI | GATC | 7 cut(s) | 190, 195, 204, 364, 578, 640, 790 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 13, 105 |
| BstPI | GGTNACC | 1 cut(s) | 177 |
| BstX2I | RGATCY | 2 cut(s) | 195, 578 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 575 |
| BstYI | RGATCY | 2 cut(s) | 195, 578 |
| BsuRI | GGCC | 1 cut(s) | 831 |
| BtgZI | GCGATG | 1 cut(s) | 750 |
| BtsCI | GGATG | 2 cut(s) | 373, 632 |
| BtsI | GCAGTG | 1 cut(s) | 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 207 |
| BveI | ACCTGC | 1 cut(s) | 424 |
| Cac8I | GCNNGC | 1 cut(s) | 514 |
| CaiI | CAGNNNCTG | 1 cut(s) | 524 |
| CfoI | GCGC | 1 cut(s) | 854 |
| CseI | GACGC | 1 cut(s) | 275 |
| Csp6I | GTAC | 2 cut(s) | 522, 759 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 601, 636 |
| CviAII | CATG | 6 cut(s) | 316, 406, 509, 559, 569, 637 |
| CviQI | GTAC | 2 cut(s) | 522, 759 |
| DdeI | CTNAG | 2 cut(s) | 218, 517 |
| DpnI | GATC | 7 cut(s) | 192, 197, 206, 366, 580, 642, 792 |
| DpnII | GATC | 7 cut(s) | 190, 195, 204, 364, 578, 640, 790 |
| DraI | TTTAAA | 1 cut(s) | 504 |
| DraIII | CACNNNGTG | 1 cut(s) | 114 |
| EaeI | YGGCCR | 1 cut(s) | 829 |
| Eam1104I | CTCTTC | 2 cut(s) | 290, 776 |
| EarI | CTCTTC | 2 cut(s) | 290, 776 |
| Eco31I | GGTCTC | 1 cut(s) | 406 |
| Eco72I | CACGTG | 1 cut(s) | 93 |
| Eco91I | GGTNACC | 1 cut(s) | 177 |
| EcoO65I | GGTNACC | 1 cut(s) | 177 |
| FaeI | CATG | 6 cut(s) | 319, 409, 512, 562, 572, 640 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 236, 268 |
| FatI | CATG | 6 cut(s) | 315, 405, 508, 558, 568, 636 |
| Fnu4HI | GCNGC | 3 cut(s) | 8, 52, 357 |
| FokI | GGATG | 2 cut(s) | 360, 639 |
| Fsp4HI | GCNGC | 3 cut(s) | 8, 52, 357 |
| FspBI | CTAG | 2 cut(s) | 701, 877 |
| GlaI | GCGC | 1 cut(s) | 853 |
| GluI | GCNGC | 3 cut(s) | 8, 52, 357 |
| GsaI | CCCAGC | 1 cut(s) | 486 |
| HaeIII | GGCC | 1 cut(s) | 831 |
| HapII | CCGG | 2 cut(s) | 75, 175 |
| HgaI | GACGC | 1 cut(s) | 275 |
| HhaI | GCGC | 1 cut(s) | 854 |
| Hin1II | CATG | 6 cut(s) | 319, 409, 512, 562, 572, 640 |
| Hin6I | GCGC | 1 cut(s) | 852 |
| HinP1I | GCGC | 1 cut(s) | 852 |
| HincII | GTYRAC | 1 cut(s) | 430 |
| HindII | GTYRAC | 1 cut(s) | 430 |
| HinfI | GANTC | 1 cut(s) | 300 |
| HpaII | CCGG | 2 cut(s) | 75, 175 |
| HphI | GGTGA | 4 cut(s) | 171, 327, 377, 797 |
| Hpy166II | GTNNAC | 2 cut(s) | 117, 430 |
| Hpy188I | TCNGA | 5 cut(s) | 195, 230, 291, 838, 873 |
| Hpy188III | TCNNGA | 8 cut(s) | 199, 265, 281, 701, 713, 746, 820, 860 |
| Hpy8I | GTNNAC | 2 cut(s) | 117, 430 |
| Hpy99I | CGWCG | 3 cut(s) | 127, 130, 759 |
| HpyAV | CCTTC | 1 cut(s) | 698 |
| HpyCH4III | ACNGT | 5 cut(s) | 225, 398, 596, 785, 803 |
| HpyCH4IV | ACGT | 6 cut(s) | 92, 249, 432, 615, 757, 868 |
| HpyCH4V | TGCA | 6 cut(s) | 170, 212, 409, 512, 659, 781 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 13, 105 |
| HpyF3I | CTNAG | 2 cut(s) | 218, 517 |
| HpySE526I | ACGT | 6 cut(s) | 92, 249, 432, 615, 757, 868 |
| Hsp92II | CATG | 6 cut(s) | 319, 409, 512, 562, 572, 640 |
| HspAI | GCGC | 1 cut(s) | 852 |
| Kzo9I | GATC | 7 cut(s) | 190, 195, 204, 364, 578, 640, 790 |
| LmnI | GCTCC | 2 cut(s) | 4, 130 |
| LweI | GCATC | 3 cut(s) | 25, 31, 727 |
| MaeI | CTAG | 2 cut(s) | 701, 877 |
| MaeII | ACGT | 6 cut(s) | 92, 249, 432, 615, 757, 868 |
| MaeIII | GTNAC | 2 cut(s) | 86, 177 |
| MalI | GATC | 7 cut(s) | 192, 197, 206, 366, 580, 642, 792 |
| MboI | GATC | 7 cut(s) | 190, 195, 204, 364, 578, 640, 790 |
| MflI | RGATCY | 2 cut(s) | 195, 578 |
| MlsI | TGGCCA | 1 cut(s) | 831 |
| MluCI | AATT | 3 cut(s) | 421, 499, 604 |
| MluNI | TGGCCA | 1 cut(s) | 831 |
| MnlI | CCTC | 7 cut(s) | 105, 155, 232, 387, 617, 699, 777 |
| Mox20I | TGGCCA | 1 cut(s) | 831 |
| MroXI | GAANNNNTTC | 1 cut(s) | 299 |
| MscI | TGGCCA | 1 cut(s) | 831 |
| MseI | TTAA | 4 cut(s) | 435, 441, 503, 540 |
| MslI | CAYNNNNRTG | 2 cut(s) | 396, 573 |
| Msp20I | TGGCCA | 1 cut(s) | 831 |
| MspI | CCGG | 2 cut(s) | 75, 175 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 13, 105 |
| NdeII | GATC | 7 cut(s) | 190, 195, 204, 364, 578, 640, 790 |
| NlaIII | CATG | 6 cut(s) | 319, 409, 512, 562, 572, 640 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 263, 814 |
| NmuCI | GTSAC | 1 cut(s) | 177 |
| PdmI | GAANNNNTTC | 1 cut(s) | 299 |
| PfeI | GAWTC | 1 cut(s) | 300 |
| Pfl23II | CGTACG | 1 cut(s) | 758 |
| PkrI | GCNGC | 3 cut(s) | 9, 53, 358 |
| PmaCI | CACGTG | 1 cut(s) | 93 |
| PmlI | CACGTG | 1 cut(s) | 93 |
| Ppu21I | YACGTR | 1 cut(s) | 93 |
| Psp1406I | AACGTT | 1 cut(s) | 432 |
| PspCI | CACGTG | 1 cut(s) | 93 |
| PspEI | GGTNACC | 1 cut(s) | 177 |
| PspFI | CCCAGC | 1 cut(s) | 482 |
| PspLI | CGTACG | 1 cut(s) | 758 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 263, 814 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 239, 271 |
| PstNI | CAGNNNCTG | 1 cut(s) | 524 |
| PsuI | RGATCY | 2 cut(s) | 195, 578 |
| RsaI | GTAC | 2 cut(s) | 523, 760 |
| RsaNI | GTAC | 2 cut(s) | 522, 759 |
| RseI | CAYNNNNRTG | 2 cut(s) | 396, 573 |
| SaqAI | TTAA | 4 cut(s) | 435, 441, 503, 540 |
| SatI | GCNGC | 3 cut(s) | 8, 52, 357 |
| Sau3AI | GATC | 7 cut(s) | 190, 195, 204, 364, 578, 640, 790 |
| SfaNI | GCATC | 3 cut(s) | 25, 31, 727 |
| SmiI | ATTTAAAT | 1 cut(s) | 504 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 396, 573 |
| SmlI | CTYRAG | 1 cut(s) | 860 |
| SmoI | CTYRAG | 1 cut(s) | 860 |
| Sse9I | AATT | 3 cut(s) | 421, 499, 604 |
| SsiI | CCGC | 3 cut(s) | 8, 51, 356 |
| SspMI | CTAG | 2 cut(s) | 701, 877 |
| SwaI | ATTTAAAT | 1 cut(s) | 504 |
| TaaI | ACNGT | 5 cut(s) | 225, 398, 596, 785, 803 |
| TaiI | ACGT | 6 cut(s) | 95, 252, 435, 618, 760, 871 |
| TaqI | TCGA | 2 cut(s) | 675, 754 |
| TasI | AATT | 3 cut(s) | 421, 499, 604 |
| TauI | GCSGC | 3 cut(s) | 10, 54, 359 |
| TfiI | GAWTC | 1 cut(s) | 300 |
| Tru1I | TTAA | 4 cut(s) | 435, 441, 503, 540 |
| Tru9I | TTAA | 4 cut(s) | 435, 441, 503, 540 |
| TscAI | CASTG | 1 cut(s) | 214 |
| TseFI | GTSAC | 1 cut(s) | 177 |
| Tsp45I | GTSAC | 1 cut(s) | 177 |
| TspDTI | ATGAA | 2 cut(s) | 321, 617 |
| TspGWI | ACGGA | 3 cut(s) | 143, 321, 415 |
| TspRI | CASTG | 1 cut(s) | 214 |
| XapI | RAATTY | 1 cut(s) | 499 |
| XbaI | TCTAGA | 1 cut(s) | 700 |
| XmnI | GAANNNNTTC | 1 cut(s) | 299 |
| XspI | CTAG | 2 cut(s) | 701, 877 |