Vacuolar protein sorting-associated protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Zein-binding | PF04576 | 343 - 432 | 1.1e-31 | Zein-binding |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 2146 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 613, 692 |
| AccBSI | CCGCTC | 1 cut(s) | 1420 |
| AccIII | TCCGGA | 1 cut(s) | 1543 |
| AclWI | GGATC | 3 cut(s) | 333, 1806, 1808 |
| AcoI | YGGCCR | 1 cut(s) | 2307 |
| AcsI | RAATTY | 6 cut(s) | 460, 961, 2074, 2167, 2269, 2368 |
| AcuI | CTGAAG | 2 cut(s) | 278, 681 |
| AfaI | GTAC | 3 cut(s) | 594, 1063, 2668 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 164, 613, 692, 712, 1481, 2479 |
| AflIII | ACRYGT | 2 cut(s) | 913, 2337 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1876 |
| AjiI | CACGTC | 1 cut(s) | 2340 |
| AjnI | CCWGG | 3 cut(s) | 1710, 2566, 2583 |
| AleI | CACNNNNGTG | 1 cut(s) | 2130 |
| Alw21I | GWGCWC | 1 cut(s) | 1998 |
| Alw26I | GTCTC | 3 cut(s) | 771, 1678, 2652 |
| Alw44I | GTGCAC | 1 cut(s) | 1994 |
| AlwI | GGATC | 3 cut(s) | 333, 1806, 1808 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 872 |
| Aor13HI | TCCGGA | 1 cut(s) | 1543 |
| ApaI | GGGCCC | 1 cut(s) | 1489 |
| ApaLI | GTGCAC | 1 cut(s) | 1994 |
| ApeKI | GCWGC | 6 cut(s) | 253, 969, 1100, 1103, 1358, 2588 |
| ApoI | RAATTY | 6 cut(s) | 460, 961, 2074, 2167, 2269, 2368 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 305, 337, 499, 531 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2368, 2502 |
| AspLEI | GCGC | 2 cut(s) | 528, 537 |
| AspS9I | GGNCC | 7 cut(s) | 221, 543, 620, 1485, 1486, 1708, 2482 |
| AsuHPI | GGTGA | 6 cut(s) | 368, 469, 692, 744, 887, 2340 |
| AsuII | TTCGAA | 1 cut(s) | 1568 |
| AvaII | GGWCC | 2 cut(s) | 620, 1708 |
| BaeGI | GKGCMC | 3 cut(s) | 342, 1489, 1998 |
| BalI | TGGCCA | 1 cut(s) | 2309 |
| BanI | GGYRCC | 1 cut(s) | 2146 |
| BanII | GRGCYC | 1 cut(s) | 1489 |
| BauI | CACGAG | 2 cut(s) | 1646, 1845 |
| BbsI | GAAGAC | 2 cut(s) | 140, 300 |
| Bbv12I | GWGCWC | 1 cut(s) | 1998 |
| BbvCI | CCTCAGC | 3 cut(s) | 97, 1224, 1725 |
| BbvI | GCAGC | 6 cut(s) | 265, 956, 1087, 1090, 1345, 2575 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1040, 1074 |
| BciT130I | CCWGG | 3 cut(s) | 1712, 2568, 2585 |
| BclI | TGATCA | 1 cut(s) | 478 |
| BcoDI | GTCTC | 3 cut(s) | 771, 1678, 2652 |
| BfaI | CTAG | 5 cut(s) | 395, 1040, 1821, 1922, 2651 |
| BfmI | CTRYAG | 3 cut(s) | 1303, 2280, 2379 |
| BglII | AGATCT | 1 cut(s) | 1248 |
| Bme1390I | CCNGG | 3 cut(s) | 1712, 2568, 2585 |
| Bme18I | GGWCC | 2 cut(s) | 620, 1708 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1876 |
| BmgBI | CACGTC | 1 cut(s) | 2340 |
| BmgT120I | GGNCC | 7 cut(s) | 221, 543, 620, 1485, 1486, 1708, 2482 |
| BmiI | GGNNCC | 7 cut(s) | 179, 544, 1486, 1487, 2148, 2250, 2565 |
| BmrFI | CCNGG | 3 cut(s) | 1712, 2568, 2585 |
| BmsI | GCATC | 7 cut(s) | 371, 934, 1169, 1210, 1401, 1572, 2387 |
| BpiI | GAAGAC | 2 cut(s) | 140, 300 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2451, 2483 |
| BpmI | CTGGAG | 1 cut(s) | 1458 |
| Bpu10I | CCTNAGC | 3 cut(s) | 97, 1224, 1725 |
| Bpu14I | TTCGAA | 1 cut(s) | 1568 |
| BpuEI | CTTGAG | 3 cut(s) | 565, 920, 2025 |
| BsaI | GGTCTC | 1 cut(s) | 1678 |
| BsaJI | CCNNGG | 3 cut(s) | 1125, 1521, 2128 |
| BsaWI | WCCGGW | 1 cut(s) | 1543 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 164, 613, 692, 712, 1481, 2479 |
| Bse118I | RCCGGY | 1 cut(s) | 531 |
| Bse1I | ACTGG | 5 cut(s) | 840, 877, 989, 1538, 1688 |
| Bse3DI | GCAATG | 4 cut(s) | 979, 1137, 1798, 2591 |
| BseAI | TCCGGA | 1 cut(s) | 1543 |
| BseBI | CCWGG | 3 cut(s) | 1712, 2568, 2585 |
| BseDI | CCNNGG | 3 cut(s) | 1125, 1521, 2128 |
| BseGI | GGATG | 6 cut(s) | 136, 223, 388, 1200, 1684, 2038 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 164, 613, 692, 712, 1481, 2479 |
| BseMI | GCAATG | 4 cut(s) | 979, 1137, 1798, 2591 |
| BseMII | CTCAG | 8 cut(s) | 111, 219, 1215, 1709, 1716, 1974, 2076, 2253 |
| BseNI | ACTGG | 5 cut(s) | 840, 877, 989, 1538, 1688 |
| BseSI | GKGCMC | 3 cut(s) | 342, 1489, 1998 |
| BseXI | GCAGC | 6 cut(s) | 265, 956, 1087, 1090, 1345, 2575 |
| BseYI | CCCAGC | 1 cut(s) | 404 |
| BsgI | GTGCAG | 2 cut(s) | 1923, 2108 |
| BshNI | GGYRCC | 1 cut(s) | 2146 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1998 |
| BsiSI | CCGG | 2 cut(s) | 532, 1544 |
| BslFI | GGGAC | 2 cut(s) | 662, 1743 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 164, 613, 692, 712, 1481, 2479 |
| BsmAI | GTCTC | 3 cut(s) | 771, 1678, 2652 |
| BsmFI | GGGAC | 2 cut(s) | 662, 1743 |
| BsmI | GAATGC | 2 cut(s) | 1387, 1726 |
| Bso31I | GGTCTC | 1 cut(s) | 1678 |
| Bsp119I | TTCGAA | 1 cut(s) | 1568 |
| Bsp120I | GGGCCC | 1 cut(s) | 1485 |
| Bsp1286I | GDGCHC | 3 cut(s) | 342, 1489, 1998 |
| Bsp13I | TCCGGA | 1 cut(s) | 1543 |
| Bsp143I | GATC | 9 cut(s) | 64, 325, 478, 1248, 1327, 1638, 1798, 1813, 2102 |
| Bsp19I | CCATGG | 1 cut(s) | 1125 |
| BspCNI | CTCAG | 8 cut(s) | 110, 220, 1216, 1708, 1717, 1975, 2077, 2252 |
| BspEI | TCCGGA | 1 cut(s) | 1543 |
| BspHI | TCATGA | 2 cut(s) | 328, 1852 |
| BspLI | GGNNCC | 7 cut(s) | 179, 544, 1486, 1487, 2148, 2250, 2565 |
| BspMAI | CTGCAG | 2 cut(s) | 2284, 2383 |
| BspPI | GGATC | 3 cut(s) | 333, 1806, 1808 |
| BspQI | GCTCTTC | 3 cut(s) | 254, 1041, 1392 |
| BspT104I | TTCGAA | 1 cut(s) | 1568 |
| BspT107I | GGYRCC | 1 cut(s) | 2146 |
| BspTNI | GGTCTC | 1 cut(s) | 1678 |
| BsrBI | CCGCTC | 1 cut(s) | 1420 |
| BsrDI | GCAATG | 4 cut(s) | 979, 1137, 1798, 2591 |
| BsrFI | RCCGGY | 1 cut(s) | 531 |
| BsrI | ACTGG | 5 cut(s) | 840, 877, 989, 1538, 1688 |
| BssAI | RCCGGY | 1 cut(s) | 531 |
| BssECI | CCNNGG | 3 cut(s) | 1125, 1521, 2128 |
| BssMI | GATC | 9 cut(s) | 64, 325, 478, 1248, 1327, 1638, 1798, 1813, 2102 |
| BssSI | CACGAG | 2 cut(s) | 1646, 1845 |
| BssT1I | CCWWGG | 2 cut(s) | 1125, 1521 |
| Bst2BI | CACGAG | 2 cut(s) | 1646, 1845 |
| Bst2UI | CCWGG | 3 cut(s) | 1712, 2568, 2585 |
| Bst4CI | ACNGT | 6 cut(s) | 597, 824, 1001, 1607, 2015, 2117 |
| Bst6I | CTCTTC | 6 cut(s) | 254, 769, 1041, 1146, 1392, 2452 |
| BstBI | TTCGAA | 1 cut(s) | 1568 |
| BstC8I | GCNNGC | 4 cut(s) | 13, 533, 2159, 2533 |
| BstDSI | CCRYGG | 1 cut(s) | 1125 |
| BstF5I | GGATG | 6 cut(s) | 136, 223, 388, 1200, 1684, 2038 |
| BstHHI | GCGC | 2 cut(s) | 528, 537 |
| BstKTI | GATC | 9 cut(s) | 67, 328, 481, 1251, 1330, 1641, 1801, 1816, 2105 |
| BstMAI | GTCTC | 3 cut(s) | 771, 1678, 2652 |
| BstMBI | GATC | 9 cut(s) | 64, 325, 478, 1248, 1327, 1638, 1798, 1813, 2102 |
| BstNI | CCWGG | 3 cut(s) | 1712, 2568, 2585 |
| BstNSI | RCATGY | 5 cut(s) | 15, 917, 1348, 1577, 2161 |
| BstSCI | CCNGG | 3 cut(s) | 1710, 2566, 2583 |
| BstSFI | CTRYAG | 3 cut(s) | 1303, 2280, 2379 |
| BstSLI | GKGCMC | 3 cut(s) | 342, 1489, 1998 |
| BstV1I | GCAGC | 6 cut(s) | 265, 956, 1087, 1090, 1345, 2575 |
| BstV2I | GAAGAC | 2 cut(s) | 140, 300 |
| BstX2I | RGATCY | 2 cut(s) | 1248, 1813 |
| BstYI | RGATCY | 2 cut(s) | 1248, 1813 |
| BtgI | CCRYGG | 1 cut(s) | 1125 |
| BtrI | CACGTC | 1 cut(s) | 2340 |
| BtsCI | GGATG | 6 cut(s) | 136, 223, 388, 1200, 1684, 2038 |
| BtsIMutI | CAGTG | 4 cut(s) | 46, 870, 1599, 2020 |
| Cac8I | GCNNGC | 4 cut(s) | 13, 533, 2159, 2533 |
| CaiI | CAGNNNCTG | 1 cut(s) | 872 |
| CciI | TCATGA | 2 cut(s) | 328, 1852 |
| CfoI | GCGC | 2 cut(s) | 528, 537 |
| Cfr10I | RCCGGY | 1 cut(s) | 531 |
| Cfr13I | GGNCC | 7 cut(s) | 221, 543, 620, 1485, 1486, 1708, 2482 |
| CseI | GACGC | 1 cut(s) | 1130 |
| Csp6I | GTAC | 3 cut(s) | 593, 1062, 2667 |
| CviQI | GTAC | 3 cut(s) | 593, 1062, 2667 |
| DpnI | GATC | 9 cut(s) | 66, 327, 480, 1250, 1329, 1640, 1800, 1815, 2104 |
| DpnII | GATC | 9 cut(s) | 64, 325, 478, 1248, 1327, 1638, 1798, 1813, 2102 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1876 |
| EaeI | YGGCCR | 1 cut(s) | 2307 |
| Eam1104I | CTCTTC | 6 cut(s) | 254, 769, 1041, 1146, 1392, 2452 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1876 |
| EarI | CTCTTC | 6 cut(s) | 254, 769, 1041, 1146, 1392, 2452 |
| Eco130I | CCWWGG | 2 cut(s) | 1125, 1521 |
| Eco24I | GRGCYC | 1 cut(s) | 1489 |
| Eco31I | GGTCTC | 1 cut(s) | 1678 |
| Eco47I | GGWCC | 2 cut(s) | 620, 1708 |
| Eco57I | CTGAAG | 2 cut(s) | 278, 681 |
| EcoO109I | RGGNCCY | 3 cut(s) | 543, 1485, 1486 |
| EcoRI | GAATTC | 3 cut(s) | 2074, 2167, 2269 |
| EcoRII | CCWGG | 3 cut(s) | 1710, 2566, 2583 |
| EcoT14I | CCWWGG | 2 cut(s) | 1125, 1521 |
| EcoT22I | ATGCAT | 1 cut(s) | 1350 |
| EcoT38I | GRGCYC | 1 cut(s) | 1489 |
| ErhI | CCWWGG | 2 cut(s) | 1125, 1521 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1265, 1297 |
| FaqI | GGGAC | 2 cut(s) | 662, 1743 |
| FauNDI | CATATG | 1 cut(s) | 757 |
| FbaI | TGATCA | 1 cut(s) | 478 |
| FokI | GGATG | 6 cut(s) | 143, 230, 395, 1207, 1691, 2045 |
| FriOI | GRGCYC | 1 cut(s) | 1489 |
| FspBI | CTAG | 5 cut(s) | 395, 1040, 1821, 1922, 2651 |
| GlaI | GCGC | 2 cut(s) | 527, 536 |
| GsaI | CCCAGC | 1 cut(s) | 408 |
| GsuI | CTGGAG | 1 cut(s) | 1458 |
| HapII | CCGG | 2 cut(s) | 532, 1544 |
| HgaI | GACGC | 1 cut(s) | 1130 |
| HhaI | GCGC | 2 cut(s) | 528, 537 |
| Hin6I | GCGC | 2 cut(s) | 526, 535 |
| HinP1I | GCGC | 2 cut(s) | 526, 535 |
| HindIII | AAGCTT | 1 cut(s) | 2049 |
| HinfI | GANTC | 4 cut(s) | 446, 602, 1499, 2548 |
| HpaII | CCGG | 2 cut(s) | 532, 1544 |
| HphI | GGTGA | 6 cut(s) | 368, 469, 692, 744, 887, 2340 |
| Hpy166II | GTNNAC | 4 cut(s) | 1916, 1996, 2120, 2218 |
| Hpy8I | GTNNAC | 4 cut(s) | 1916, 1996, 2120, 2218 |
| Hpy99I | CGWCG | 1 cut(s) | 2344 |
| HpyCH4III | ACNGT | 6 cut(s) | 597, 824, 1001, 1607, 2015, 2117 |
| HpyCH4IV | ACGT | 2 cut(s) | 1829, 2339 |
| HpySE526I | ACGT | 2 cut(s) | 1829, 2339 |
| HspAI | GCGC | 2 cut(s) | 526, 535 |
| Kpn2I | TCCGGA | 1 cut(s) | 1543 |
| KroI | GCCGGC | 1 cut(s) | 531 |
| KroNI | GCCGGC | 1 cut(s) | 533 |
| Ksp22I | TGATCA | 1 cut(s) | 478 |
| Kzo9I | GATC | 9 cut(s) | 64, 325, 478, 1248, 1327, 1638, 1798, 1813, 2102 |
| LguI | GCTCTTC | 3 cut(s) | 254, 1041, 1392 |
| LmnI | GCTCC | 2 cut(s) | 865, 1417 |
| Lsp1109I | GCAGC | 6 cut(s) | 265, 956, 1087, 1090, 1345, 2575 |
| LweI | GCATC | 7 cut(s) | 371, 934, 1169, 1210, 1401, 1572, 2387 |
| MaeI | CTAG | 5 cut(s) | 395, 1040, 1821, 1922, 2651 |
| MaeII | ACGT | 2 cut(s) | 1829, 2339 |
| MaeIII | GTNAC | 3 cut(s) | 655, 1496, 1643 |
| MalI | GATC | 9 cut(s) | 66, 327, 480, 1250, 1329, 1640, 1800, 1815, 2104 |
| MbiI | CCGCTC | 1 cut(s) | 1420 |
| MboI | GATC | 9 cut(s) | 64, 325, 478, 1248, 1327, 1638, 1798, 1813, 2102 |
| MfeI | CAATTG | 3 cut(s) | 1164, 2181, 2555 |
| MflI | RGATCY | 2 cut(s) | 1248, 1813 |
| MhlI | GDGCHC | 3 cut(s) | 342, 1489, 1998 |
| MlsI | TGGCCA | 1 cut(s) | 2309 |
| MluNI | TGGCCA | 1 cut(s) | 2309 |
| MlyI | GAGTC | 2 cut(s) | 455, 1493 |
| MmeI | TCCRAC | 2 cut(s) | 303, 887 |
| Mox20I | TGGCCA | 1 cut(s) | 2309 |
| Mph1103I | ATGCAT | 1 cut(s) | 1350 |
| MreI | CGCCGGCG | 1 cut(s) | 531 |
| MroI | TCCGGA | 1 cut(s) | 1543 |
| MroNI | GCCGGC | 1 cut(s) | 531 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2368, 2502 |
| MscI | TGGCCA | 1 cut(s) | 2309 |
| MseI | TTAA | 5 cut(s) | 143, 1622, 1826, 1989, 2438 |
| MslI | CAYNNNNRTG | 5 cut(s) | 306, 333, 1130, 1392, 2130 |
| Msp20I | TGGCCA | 1 cut(s) | 2309 |
| MspA1I | CMGCKG | 2 cut(s) | 256, 2509 |
| MspI | CCGG | 2 cut(s) | 532, 1544 |
| MspR9I | CCNGG | 3 cut(s) | 1712, 2568, 2585 |
| MunI | CAATTG | 3 cut(s) | 1164, 2181, 2555 |
| Mva1269I | GAATGC | 2 cut(s) | 1387, 1726 |
| MvaI | CCWGG | 3 cut(s) | 1712, 2568, 2585 |
| NaeI | GCCGGC | 1 cut(s) | 533 |
| NcoI | CCATGG | 1 cut(s) | 1125 |
| NdeI | CATATG | 1 cut(s) | 757 |
| NdeII | GATC | 9 cut(s) | 64, 325, 478, 1248, 1327, 1638, 1798, 1813, 2102 |
| NgoMIV | GCCGGC | 1 cut(s) | 531 |
| NlaIV | GGNNCC | 7 cut(s) | 179, 544, 1486, 1487, 2148, 2250, 2565 |
| NmuCI | GTSAC | 2 cut(s) | 1496, 1643 |
| NsiI | ATGCAT | 1 cut(s) | 1350 |
| NspI | RCATGY | 5 cut(s) | 15, 917, 1348, 1577, 2161 |
| NspV | TTCGAA | 1 cut(s) | 1568 |
| OliI | CACNNNNGTG | 1 cut(s) | 2130 |
| PaeI | GCATGC | 2 cut(s) | 15, 2161 |
| PagI | TCATGA | 2 cut(s) | 328, 1852 |
| PciI | ACATGT | 1 cut(s) | 913 |
| PciSI | GCTCTTC | 3 cut(s) | 254, 1041, 1392 |
| PctI | GAATGC | 2 cut(s) | 1387, 1726 |
| PdiI | GCCGGC | 1 cut(s) | 533 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2368, 2502 |
| PfeI | GAWTC | 2 cut(s) | 602, 2548 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 613, 692 |
| PleI | GAGTC | 2 cut(s) | 454, 1493 |
| PpsI | GAGTC | 2 cut(s) | 454, 1493 |
| PscI | ACATGT | 1 cut(s) | 913 |
| Psp6I | CCWGG | 3 cut(s) | 1710, 2566, 2583 |
| PspFI | CCCAGC | 1 cut(s) | 404 |
| PspGI | CCWGG | 3 cut(s) | 1710, 2566, 2583 |
| PspN4I | GGNNCC | 7 cut(s) | 179, 544, 1486, 1487, 2148, 2250, 2565 |
| PspOMI | GGGCCC | 1 cut(s) | 1485 |
| PspPI | GGNCC | 7 cut(s) | 221, 543, 620, 1485, 1486, 1708, 2482 |
| PstI | CTGCAG | 2 cut(s) | 2284, 2383 |
| PstNI | CAGNNNCTG | 1 cut(s) | 872 |
| PsuI | RGATCY | 2 cut(s) | 1248, 1813 |
| PvuII | CAGCTG | 2 cut(s) | 256, 2509 |
| RsaI | GTAC | 3 cut(s) | 594, 1063, 2668 |
| RsaNI | GTAC | 3 cut(s) | 593, 1062, 2667 |
| RseI | CAYNNNNRTG | 5 cut(s) | 306, 333, 1130, 1392, 2130 |
| SapI | GCTCTTC | 3 cut(s) | 254, 1041, 1392 |
| SaqAI | TTAA | 5 cut(s) | 143, 1622, 1826, 1989, 2438 |
| Sau3AI | GATC | 9 cut(s) | 64, 325, 478, 1248, 1327, 1638, 1798, 1813, 2102 |
| Sau96I | GGNCC | 7 cut(s) | 221, 543, 620, 1485, 1486, 1708, 2482 |
| SchI | GAGTC | 2 cut(s) | 455, 1493 |
| ScrFI | CCNGG | 3 cut(s) | 1712, 2568, 2585 |
| SduI | GDGCHC | 3 cut(s) | 342, 1489, 1998 |
| SfaNI | GCATC | 7 cut(s) | 371, 934, 1169, 1210, 1401, 1572, 2387 |
| SfcI | CTRYAG | 3 cut(s) | 1303, 2280, 2379 |
| SfuI | TTCGAA | 1 cut(s) | 1568 |
| SgrAI | CRCCGGYG | 1 cut(s) | 531 |
| SinI | GGWCC | 2 cut(s) | 620, 1708 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 306, 333, 1130, 1392, 2130 |
| SmlI | CTYRAG | 3 cut(s) | 580, 899, 2040 |
| SmoI | CTYRAG | 3 cut(s) | 580, 899, 2040 |
| SphI | GCATGC | 2 cut(s) | 15, 2161 |
| SspMI | CTAG | 5 cut(s) | 395, 1040, 1821, 1922, 2651 |
| StyD4I | CCNGG | 3 cut(s) | 1710, 2566, 2583 |
| StyI | CCWWGG | 2 cut(s) | 1125, 1521 |
| TaaI | ACNGT | 6 cut(s) | 597, 824, 1001, 1607, 2015, 2117 |
| TaiI | ACGT | 2 cut(s) | 1832, 2342 |
| TaqI | TCGA | 6 cut(s) | 119, 276, 317, 505, 1409, 1568 |
| TauI | GCSGC | 5 cut(s) | 531, 708, 711, 1115, 2599 |
| TfiI | GAWTC | 2 cut(s) | 602, 2548 |
| Tru1I | TTAA | 5 cut(s) | 143, 1622, 1826, 1989, 2438 |
| Tru9I | TTAA | 5 cut(s) | 143, 1622, 1826, 1989, 2438 |
| TscAI | CASTG | 4 cut(s) | 46, 877, 1606, 2020 |
| TseFI | GTSAC | 2 cut(s) | 1496, 1643 |
| TseI | GCWGC | 6 cut(s) | 253, 969, 1100, 1103, 1358, 2588 |
| Tsp45I | GTSAC | 2 cut(s) | 1496, 1643 |
| TspGWI | ACGGA | 2 cut(s) | 2261, 2576 |
| TspRI | CASTG | 4 cut(s) | 46, 877, 1606, 2020 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 613, 692 |
| VneI | GTGCAC | 1 cut(s) | 1994 |
| VpaK11BI | GGWCC | 2 cut(s) | 620, 1708 |
| XapI | RAATTY | 6 cut(s) | 460, 961, 2074, 2167, 2269, 2368 |
| XceI | RCATGY | 5 cut(s) | 15, 917, 1348, 1577, 2161 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 614 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2368, 2502 |
| XspI | CTAG | 5 cut(s) | 395, 1040, 1821, 1922, 2651 |
| Zsp2I | ATGCAT | 1 cut(s) | 1350 |