Zinc finger BED domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 659 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1197 |
| AccI | GTMKAC | 1 cut(s) | 1294 |
| AciI | CCGC | 3 cut(s) | 683, 1333, 1855 |
| AclWI | GGATC | 5 cut(s) | 914, 1320, 1409, 1422, 1538 |
| AcsI | RAATTY | 6 cut(s) | 165, 661, 748, 1063, 1117, 1193 |
| AfaI | GTAC | 5 cut(s) | 69, 939, 1370, 1719, 1897 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 689, 1197 |
| AflII | CTTAAG | 1 cut(s) | 1126 |
| AflIII | ACRYGT | 1 cut(s) | 1220 |
| AleI | CACNNNNGTG | 1 cut(s) | 690 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 121, 153 |
| Alw21I | GWGCWC | 3 cut(s) | 877, 1093, 1785 |
| Alw26I | GTCTC | 2 cut(s) | 11, 547 |
| AlwI | GGATC | 5 cut(s) | 914, 1320, 1409, 1422, 1538 |
| Ama87I | CYCGRG | 1 cut(s) | 1899 |
| AoxI | GGCC | 1 cut(s) | 1818 |
| ApeKI | GCWGC | 1 cut(s) | 1857 |
| ApoI | RAATTY | 6 cut(s) | 165, 661, 748, 1063, 1117, 1193 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 556, 588 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1274 |
| AspA2I | CCTAGG | 1 cut(s) | 1418 |
| AspS9I | GGNCC | 3 cut(s) | 579, 1235, 1466 |
| AsuHPI | GGTGA | 3 cut(s) | 188, 300, 1180 |
| AvaI | CYCGRG | 1 cut(s) | 1899 |
| AvaII | GGWCC | 3 cut(s) | 579, 1235, 1466 |
| AvrII | CCTAGG | 1 cut(s) | 1418 |
| AxyI | CCTNAGG | 1 cut(s) | 1307 |
| BamHI | GGATCC | 1 cut(s) | 1414 |
| BauI | CACGAG | 1 cut(s) | 1773 |
| BbsI | GAAGAC | 2 cut(s) | 815, 1664 |
| Bbv12I | GWGCWC | 3 cut(s) | 877, 1093, 1785 |
| BbvI | GCAGC | 1 cut(s) | 1869 |
| BccI | CCATC | 4 cut(s) | 590, 896, 1330, 1336 |
| BceAI | ACGGC | 1 cut(s) | 630 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1797, 1831 |
| BcoDI | GTCTC | 2 cut(s) | 11, 547 |
| BfaI | CTAG | 6 cut(s) | 294, 701, 1056, 1419, 1694, 1769 |
| BfrI | CTTAAG | 1 cut(s) | 1126 |
| BisI | GCNGC | 1 cut(s) | 1858 |
| BlnI | CCTAGG | 1 cut(s) | 1418 |
| BlsI | GCNGC | 1 cut(s) | 1859 |
| BmcAI | AGTACT | 1 cut(s) | 1370 |
| Bme18I | GGWCC | 3 cut(s) | 579, 1235, 1466 |
| BmeT110I | CYCGRG | 1 cut(s) | 1899 |
| BmgT120I | GGNCC | 3 cut(s) | 579, 1235, 1466 |
| BmiI | GGNNCC | 1 cut(s) | 1416 |
| BmsI | GCATC | 6 cut(s) | 43, 957, 1068, 1419, 1510, 1817 |
| BpiI | GAAGAC | 2 cut(s) | 815, 1664 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 207, 239, 819, 851 |
| BpmI | CTGGAG | 1 cut(s) | 1855 |
| BpuEI | CTTGAG | 2 cut(s) | 1569, 1631 |
| BsaAI | YACGTR | 2 cut(s) | 941, 1528 |
| BsaI | GGTCTC | 1 cut(s) | 11 |
| BsaJI | CCNNGG | 1 cut(s) | 1418 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 444, 474, 544, 574 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 689, 1197 |
| Bse1I | ACTGG | 1 cut(s) | 1376 |
| Bse21I | CCTNAGG | 1 cut(s) | 1307 |
| Bse3DI | GCAATG | 1 cut(s) | 1803 |
| BseDI | CCNNGG | 1 cut(s) | 1418 |
| BseGI | GGATG | 4 cut(s) | 1341, 1347, 1687, 1720 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 689, 1197 |
| BseMI | GCAATG | 1 cut(s) | 1803 |
| BseMII | CTCAG | 1 cut(s) | 1298 |
| BseNI | ACTGG | 1 cut(s) | 1376 |
| BseRI | GAGGAG | 2 cut(s) | 60, 669 |
| BseXI | GCAGC | 1 cut(s) | 1869 |
| BsgI | GTGCAG | 1 cut(s) | 435 |
| BshFI | GGCC | 1 cut(s) | 1820 |
| BsiHKAI | GWGCWC | 3 cut(s) | 877, 1093, 1785 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1899 |
| BslFI | GGGAC | 1 cut(s) | 259 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 689, 1197 |
| BsmAI | GTCTC | 2 cut(s) | 11, 547 |
| BsmFI | GGGAC | 1 cut(s) | 259 |
| BsnI | GGCC | 1 cut(s) | 1820 |
| Bso31I | GGTCTC | 1 cut(s) | 11 |
| BsoBI | CYCGRG | 1 cut(s) | 1899 |
| Bsp1286I | GDGCHC | 3 cut(s) | 877, 1093, 1785 |
| Bsp1407I | TGTACA | 1 cut(s) | 67 |
| Bsp143I | GATC | 7 cut(s) | 919, 1185, 1312, 1414, 1543, 1597, 1846 |
| BspACI | CCGC | 3 cut(s) | 683, 1333, 1855 |
| BspANI | GGCC | 1 cut(s) | 1820 |
| BspCNI | CTCAG | 1 cut(s) | 1299 |
| BspHI | TCATGA | 1 cut(s) | 1326 |
| BspLI | GGNNCC | 1 cut(s) | 1416 |
| BspPI | GGATC | 5 cut(s) | 914, 1320, 1409, 1422, 1538 |
| BspQI | GCTCTTC | 1 cut(s) | 1529 |
| BspTI | CTTAAG | 1 cut(s) | 1126 |
| BspTNI | GGTCTC | 1 cut(s) | 11 |
| BsrDI | GCAATG | 1 cut(s) | 1803 |
| BsrGI | TGTACA | 1 cut(s) | 67 |
| BsrI | ACTGG | 1 cut(s) | 1376 |
| BssECI | CCNNGG | 1 cut(s) | 1418 |
| BssMI | GATC | 7 cut(s) | 919, 1185, 1312, 1414, 1543, 1597, 1846 |
| BssNAI | GTATAC | 1 cut(s) | 1295 |
| BssSI | CACGAG | 1 cut(s) | 1773 |
| BssT1I | CCWWGG | 1 cut(s) | 1418 |
| Bst1107I | GTATAC | 1 cut(s) | 1295 |
| Bst2BI | CACGAG | 1 cut(s) | 1773 |
| Bst4CI | ACNGT | 4 cut(s) | 118, 478, 1866, 1879 |
| Bst6I | CTCTTC | 4 cut(s) | 119, 128, 1024, 1529 |
| BstAFI | CTTAAG | 1 cut(s) | 1126 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1048 |
| BstAUI | TGTACA | 1 cut(s) | 67 |
| BstBAI | YACGTR | 2 cut(s) | 941, 1528 |
| BstC8I | GCNNGC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 4 cut(s) | 333, 766, 813, 1307 |
| BstF5I | GGATG | 4 cut(s) | 1341, 1347, 1687, 1720 |
| BstKTI | GATC | 7 cut(s) | 922, 1188, 1315, 1417, 1546, 1600, 1849 |
| BstMAI | GTCTC | 2 cut(s) | 11, 547 |
| BstMBI | GATC | 7 cut(s) | 919, 1185, 1312, 1414, 1543, 1597, 1846 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 682, 1048, 1602 |
| BstNSI | RCATGY | 2 cut(s) | 259, 1224 |
| BstV1I | GCAGC | 1 cut(s) | 1869 |
| BstV2I | GAAGAC | 2 cut(s) | 815, 1664 |
| BstX2I | RGATCY | 1 cut(s) | 1414 |
| BstYI | RGATCY | 1 cut(s) | 1414 |
| BstZ17I | GTATAC | 1 cut(s) | 1295 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1307 |
| BsuRI | GGCC | 1 cut(s) | 1820 |
| BtsCI | GGATG | 4 cut(s) | 1341, 1347, 1687, 1720 |
| BtsI | GCAGTG | 1 cut(s) | 777 |
| BtsIMutI | CAGTG | 2 cut(s) | 777, 1862 |
| Cac8I | GCNNGC | 1 cut(s) | 195 |
| CciI | TCATGA | 1 cut(s) | 1326 |
| Cfr13I | GGNCC | 3 cut(s) | 579, 1235, 1466 |
| Csp6I | GTAC | 5 cut(s) | 68, 938, 1369, 1718, 1896 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 193, 228 |
| CviAII | CATG | 6 cut(s) | 256, 386, 488, 860, 1221, 1327 |
| CviQI | GTAC | 5 cut(s) | 68, 938, 1369, 1718, 1896 |
| DdeI | CTNAG | 4 cut(s) | 333, 766, 813, 1307 |
| DpnI | GATC | 7 cut(s) | 921, 1187, 1314, 1416, 1545, 1599, 1848 |
| DpnII | GATC | 7 cut(s) | 919, 1185, 1312, 1414, 1543, 1597, 1846 |
| DraI | TTTAAA | 1 cut(s) | 9 |
| Eam1104I | CTCTTC | 4 cut(s) | 119, 128, 1024, 1529 |
| EarI | CTCTTC | 4 cut(s) | 119, 128, 1024, 1529 |
| EciI | GGCGGA | 1 cut(s) | 1348 |
| Eco130I | CCWWGG | 1 cut(s) | 1418 |
| Eco31I | GGTCTC | 1 cut(s) | 11 |
| Eco32I | GATATC | 1 cut(s) | 1751 |
| Eco47I | GGWCC | 3 cut(s) | 579, 1235, 1466 |
| Eco81I | CCTNAGG | 1 cut(s) | 1307 |
| Eco88I | CYCGRG | 1 cut(s) | 1899 |
| EcoRI | GAATTC | 1 cut(s) | 1063 |
| EcoRV | GATATC | 1 cut(s) | 1751 |
| EcoT14I | CCWWGG | 1 cut(s) | 1418 |
| EcoT22I | ATGCAT | 1 cut(s) | 1525 |
| ErhI | CCWWGG | 1 cut(s) | 1418 |
| FaeI | CATG | 6 cut(s) | 259, 389, 491, 863, 1224, 1330 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 507, 539, 540, 572, 806, 838, 1875, 1907 |
| FaqI | GGGAC | 1 cut(s) | 259 |
| FatI | CATG | 6 cut(s) | 255, 385, 487, 859, 1220, 1326 |
| FauNDI | CATATG | 1 cut(s) | 672 |
| FblI | GTMKAC | 1 cut(s) | 1294 |
| Fnu4HI | GCNGC | 1 cut(s) | 1858 |
| FokI | GGATG | 4 cut(s) | 1348, 1354, 1694, 1727 |
| Fsp4HI | GCNGC | 1 cut(s) | 1858 |
| FspBI | CTAG | 6 cut(s) | 294, 701, 1056, 1419, 1694, 1769 |
| GluI | GCNGC | 1 cut(s) | 1858 |
| GsuI | CTGGAG | 1 cut(s) | 1855 |
| HaeIII | GGCC | 1 cut(s) | 1820 |
| Hin1II | CATG | 6 cut(s) | 259, 389, 491, 863, 1224, 1330 |
| HindIII | AAGCTT | 2 cut(s) | 1457, 1884 |
| HinfI | GANTC | 9 cut(s) | 233, 629, 788, 852, 1351, 1390, 1472, 1553, 1814 |
| HphI | GGTGA | 3 cut(s) | 188, 300, 1180 |
| Hpy166II | GTNNAC | 2 cut(s) | 579, 1295 |
| Hpy188I | TCNGA | 7 cut(s) | 102, 383, 634, 1269, 1378, 1748, 1813 |
| Hpy188III | TCNNGA | 9 cut(s) | 90, 883, 899, 1233, 1316, 1327, 1469, 1775, 1901 |
| Hpy8I | GTNNAC | 2 cut(s) | 579, 1295 |
| HpyAV | CCTTC | 2 cut(s) | 96, 933 |
| HpyCH4III | ACNGT | 4 cut(s) | 118, 478, 1866, 1879 |
| HpyCH4IV | ACGT | 4 cut(s) | 262, 325, 940, 1527 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 682, 1048, 1602 |
| HpyF3I | CTNAG | 4 cut(s) | 333, 766, 813, 1307 |
| HpySE526I | ACGT | 4 cut(s) | 262, 325, 940, 1527 |
| Hsp92II | CATG | 6 cut(s) | 259, 389, 491, 863, 1224, 1330 |
| Kzo9I | GATC | 7 cut(s) | 919, 1185, 1312, 1414, 1543, 1597, 1846 |
| LguI | GCTCTTC | 1 cut(s) | 1529 |
| LmnI | GCTCC | 2 cut(s) | 215, 1738 |
| Lsp1109I | GCAGC | 1 cut(s) | 1869 |
| LweI | GCATC | 6 cut(s) | 43, 957, 1068, 1419, 1510, 1817 |
| MaeI | CTAG | 6 cut(s) | 294, 701, 1056, 1419, 1694, 1769 |
| MaeII | ACGT | 4 cut(s) | 262, 325, 940, 1527 |
| MaeIII | GTNAC | 3 cut(s) | 258, 1130, 1216 |
| MalI | GATC | 7 cut(s) | 921, 1187, 1314, 1416, 1545, 1599, 1848 |
| MboI | GATC | 7 cut(s) | 919, 1185, 1312, 1414, 1543, 1597, 1846 |
| MfeI | CAATTG | 1 cut(s) | 915 |
| MflI | RGATCY | 1 cut(s) | 1414 |
| MhlI | GDGCHC | 3 cut(s) | 877, 1093, 1785 |
| MmeI | TCCRAC | 2 cut(s) | 991, 1692 |
| Mph1103I | ATGCAT | 1 cut(s) | 1525 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1274 |
| MslI | CAYNNNNRTG | 1 cut(s) | 690 |
| MspCI | CTTAAG | 1 cut(s) | 1126 |
| MunI | CAATTG | 1 cut(s) | 915 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 682, 1048, 1602 |
| NdeI | CATATG | 1 cut(s) | 672 |
| NdeII | GATC | 7 cut(s) | 919, 1185, 1312, 1414, 1543, 1597, 1846 |
| NlaIII | CATG | 6 cut(s) | 259, 389, 491, 863, 1224, 1330 |
| NlaIV | GGNNCC | 1 cut(s) | 1416 |
| NmeAIII | GCCGAG | 1 cut(s) | 1130 |
| NmuCI | GTSAC | 1 cut(s) | 1130 |
| NsiI | ATGCAT | 1 cut(s) | 1525 |
| NspI | RCATGY | 2 cut(s) | 259, 1224 |
| OliI | CACNNNNGTG | 1 cut(s) | 690 |
| PaeR7I | CTCGAG | 1 cut(s) | 1899 |
| PagI | TCATGA | 1 cut(s) | 1326 |
| PciI | ACATGT | 1 cut(s) | 1220 |
| PciSI | GCTCTTC | 1 cut(s) | 1529 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1274 |
| PfeI | GAWTC | 9 cut(s) | 233, 629, 788, 852, 1351, 1390, 1472, 1553, 1814 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1197 |
| PkrI | GCNGC | 1 cut(s) | 1859 |
| Ppu21I | YACGTR | 2 cut(s) | 941, 1528 |
| PscI | ACATGT | 1 cut(s) | 1220 |
| PsiI | TTATAA | 1 cut(s) | 659 |
| PspN4I | GGNNCC | 1 cut(s) | 1416 |
| PspPI | GGNCC | 3 cut(s) | 579, 1235, 1466 |
| PsuI | RGATCY | 1 cut(s) | 1414 |
| RsaI | GTAC | 5 cut(s) | 69, 939, 1370, 1719, 1897 |
| RsaNI | GTAC | 5 cut(s) | 68, 938, 1369, 1718, 1896 |
| RseI | CAYNNNNRTG | 1 cut(s) | 690 |
| SapI | GCTCTTC | 1 cut(s) | 1529 |
| SatI | GCNGC | 1 cut(s) | 1858 |
| Sau3AI | GATC | 7 cut(s) | 919, 1185, 1312, 1414, 1543, 1597, 1846 |
| Sau96I | GGNCC | 3 cut(s) | 579, 1235, 1466 |
| ScaI | AGTACT | 1 cut(s) | 1370 |
| SduI | GDGCHC | 3 cut(s) | 877, 1093, 1785 |
| SfaNI | GCATC | 6 cut(s) | 43, 957, 1068, 1419, 1510, 1817 |
| Sfr274I | CTCGAG | 1 cut(s) | 1899 |
| SinI | GGWCC | 3 cut(s) | 579, 1235, 1466 |
| SlaI | CTCGAG | 1 cut(s) | 1899 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 690 |
| SmlI | CTYRAG | 4 cut(s) | 1126, 1584, 1610, 1899 |
| SmoI | CTYRAG | 4 cut(s) | 1126, 1584, 1610, 1899 |
| SsiI | CCGC | 3 cut(s) | 683, 1333, 1855 |
| SspMI | CTAG | 6 cut(s) | 294, 701, 1056, 1419, 1694, 1769 |
| StyI | CCWWGG | 1 cut(s) | 1418 |
| TaaI | ACNGT | 4 cut(s) | 118, 478, 1866, 1879 |
| TaiI | ACGT | 4 cut(s) | 265, 328, 943, 1530 |
| TaqI | TCGA | 3 cut(s) | 1565, 1643, 1900 |
| TatI | WGTACW | 4 cut(s) | 67, 1368, 1717, 1895 |
| TfiI | GAWTC | 9 cut(s) | 233, 629, 788, 852, 1351, 1390, 1472, 1553, 1814 |
| TscAI | CASTG | 2 cut(s) | 784, 1869 |
| TseFI | GTSAC | 1 cut(s) | 1130 |
| TseI | GCWGC | 1 cut(s) | 1857 |
| Tsp45I | GTSAC | 1 cut(s) | 1130 |
| TspRI | CASTG | 2 cut(s) | 784, 1869 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1197 |
| Vha464I | CTTAAG | 1 cut(s) | 1126 |
| VpaK11BI | GGWCC | 3 cut(s) | 579, 1235, 1466 |
| XapI | RAATTY | 6 cut(s) | 165, 661, 748, 1063, 1117, 1193 |
| XceI | RCATGY | 2 cut(s) | 259, 1224 |
| XhoI | CTCGAG | 1 cut(s) | 1899 |
| XmaJI | CCTAGG | 1 cut(s) | 1418 |
| XmiI | GTMKAC | 1 cut(s) | 1294 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1274 |
| XspI | CTAG | 6 cut(s) | 294, 701, 1056, 1419, 1694, 1769 |
| ZrmI | AGTACT | 1 cut(s) | 1370 |
| Zsp2I | ATGCAT | 1 cut(s) | 1525 |