BED zinc finger
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 147 - 244 | 1.9e-31 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 764 |
| AccII | CGCG | 1 cut(s) | 77 |
| AciI | CCGC | 1 cut(s) | 291 |
| AclWI | GGATC | 4 cut(s) | 518, 531, 614, 627 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AcsI | RAATTY | 3 cut(s) | 341, 663, 787 |
| AcuI | CTGAAG | 1 cut(s) | 156 |
| AfaI | GTAC | 4 cut(s) | 108, 161, 575, 629 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 47, 364 |
| AflII | CTTAAG | 1 cut(s) | 203 |
| AflIII | ACRYGT | 1 cut(s) | 689 |
| AgsI | TTSAA | 5 cut(s) | 46, 218, 304, 346, 406 |
| AluBI | AGCT | 4 cut(s) | 214, 602, 683, 724 |
| AluI | AGCT | 4 cut(s) | 214, 602, 683, 724 |
| Alw21I | GWGCWC | 2 cut(s) | 400, 726 |
| Alw26I | GTCTC | 1 cut(s) | 380 |
| Alw44I | GTGCAC | 1 cut(s) | 396 |
| AlwI | GGATC | 4 cut(s) | 518, 531, 614, 627 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApaLI | GTGCAC | 1 cut(s) | 396 |
| ApeKI | GCWGC | 1 cut(s) | 90 |
| ApoI | RAATTY | 3 cut(s) | 341, 663, 787 |
| AseI | ATTAAT | 1 cut(s) | 567 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 192 |
| AspLEI | GCGC | 1 cut(s) | 79 |
| AsuC2I | CCSGG | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 2 cut(s) | 505, 649 |
| BaeGI | GKGCMC | 2 cut(s) | 180, 400 |
| BamHI | GGATCC | 2 cut(s) | 523, 619 |
| BanI | GGYRCC | 1 cut(s) | 764 |
| BanII | GRGCYC | 1 cut(s) | 726 |
| BauI | CACGAG | 1 cut(s) | 719 |
| Bbv12I | GWGCWC | 2 cut(s) | 400, 726 |
| BbvI | GCAGC | 1 cut(s) | 102 |
| BccI | CCATC | 2 cut(s) | 694, 787 |
| BceAI | ACGGC | 1 cut(s) | 621 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 55, 89, 157, 191 |
| BciVI | GTATCC | 1 cut(s) | 319 |
| BcnI | CCSGG | 1 cut(s) | 146 |
| BcoDI | GTCTC | 1 cut(s) | 380 |
| BfaI | CTAG | 2 cut(s) | 434, 557 |
| BfmI | CTRYAG | 1 cut(s) | 586 |
| BfrI | CTTAAG | 1 cut(s) | 203 |
| BfuI | GTATCC | 1 cut(s) | 319 |
| BglII | AGATCT | 1 cut(s) | 496 |
| BisI | GCNGC | 2 cut(s) | 91, 291 |
| BlsI | GCNGC | 2 cut(s) | 92, 292 |
| BmcAI | AGTACT | 1 cut(s) | 108 |
| Bme1390I | CCNGG | 1 cut(s) | 146 |
| BmiI | GGNNCC | 3 cut(s) | 525, 621, 766 |
| BmrFI | CCNGG | 1 cut(s) | 146 |
| BmsI | GCATC | 2 cut(s) | 162, 325 |
| BpmI | CTGGAG | 1 cut(s) | 134 |
| BpuMI | CCSGG | 1 cut(s) | 146 |
| Bsa29I | ATCGAT | 1 cut(s) | 730 |
| BsaAI | YACGTR | 2 cut(s) | 163, 330 |
| BsaJI | CCNNGG | 1 cut(s) | 623 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 47, 364 |
| Bse1I | ACTGG | 2 cut(s) | 117, 581 |
| Bse3DI | GCAATG | 1 cut(s) | 93 |
| BseCI | ATCGAT | 1 cut(s) | 730 |
| BseDI | CCNNGG | 1 cut(s) | 623 |
| BseGI | GGATG | 1 cut(s) | 429 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 47, 364 |
| BseMI | GCAATG | 1 cut(s) | 93 |
| BseMII | CTCAG | 3 cut(s) | 77, 272, 288 |
| BseNI | ACTGG | 2 cut(s) | 117, 581 |
| BseSI | GKGCMC | 2 cut(s) | 180, 400 |
| BseXI | GCAGC | 1 cut(s) | 102 |
| Bsh1236I | CGCG | 1 cut(s) | 77 |
| Bsh1285I | CGRYCG | 1 cut(s) | 712 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BshNI | GGYRCC | 1 cut(s) | 764 |
| BshVI | ATCGAT | 1 cut(s) | 730 |
| BsiEI | CGRYCG | 1 cut(s) | 712 |
| BsiHKAI | GWGCWC | 2 cut(s) | 400, 726 |
| BsiSI | CCGG | 1 cut(s) | 145 |
| BslFI | GGGAC | 2 cut(s) | 161, 206 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 47, 364 |
| BsmAI | GTCTC | 1 cut(s) | 380 |
| BsmFI | GGGAC | 2 cut(s) | 161, 206 |
| BsmI | GAATGC | 1 cut(s) | 124 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 3 cut(s) | 180, 400, 726 |
| Bsp143I | GATC | 5 cut(s) | 496, 523, 619, 709, 731 |
| BspACI | CCGC | 1 cut(s) | 291 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspCNI | CTCAG | 3 cut(s) | 78, 271, 289 |
| BspDI | ATCGAT | 1 cut(s) | 730 |
| BspFNI | CGCG | 1 cut(s) | 77 |
| BspHI | TCATGA | 1 cut(s) | 803 |
| BspLI | GGNNCC | 3 cut(s) | 525, 621, 766 |
| BspPI | GGATC | 4 cut(s) | 518, 531, 614, 627 |
| BspT107I | GGYRCC | 1 cut(s) | 764 |
| BspTI | CTTAAG | 1 cut(s) | 203 |
| BsrDI | GCAATG | 1 cut(s) | 93 |
| BsrI | ACTGG | 2 cut(s) | 117, 581 |
| BssECI | CCNNGG | 1 cut(s) | 623 |
| BssMI | GATC | 5 cut(s) | 496, 523, 619, 709, 731 |
| BssSI | CACGAG | 1 cut(s) | 719 |
| Bst2BI | CACGAG | 1 cut(s) | 719 |
| Bst4CI | ACNGT | 1 cut(s) | 587 |
| Bst6I | CTCTTC | 1 cut(s) | 473 |
| BstAFI | CTTAAG | 1 cut(s) | 203 |
| BstBAI | YACGTR | 2 cut(s) | 163, 330 |
| BstC8I | GCNNGC | 1 cut(s) | 64 |
| BstDEI | CTNAG | 3 cut(s) | 86, 258, 297 |
| BstF5I | GGATG | 1 cut(s) | 429 |
| BstFNI | CGCG | 1 cut(s) | 77 |
| BstHHI | GCGC | 1 cut(s) | 79 |
| BstKTI | GATC | 5 cut(s) | 499, 526, 622, 712, 734 |
| BstMAI | GTCTC | 1 cut(s) | 380 |
| BstMBI | GATC | 5 cut(s) | 496, 523, 619, 709, 731 |
| BstMCI | CGRYCG | 1 cut(s) | 712 |
| BstNSI | RCATGY | 1 cut(s) | 693 |
| BstSCI | CCNGG | 1 cut(s) | 144 |
| BstSFI | CTRYAG | 1 cut(s) | 586 |
| BstSLI | GKGCMC | 2 cut(s) | 180, 400 |
| BstSNI | TACGTA | 1 cut(s) | 330 |
| BstUI | CGCG | 1 cut(s) | 77 |
| BstV1I | GCAGC | 1 cut(s) | 102 |
| BstX2I | RGATCY | 3 cut(s) | 496, 523, 619 |
| BstYI | RGATCY | 3 cut(s) | 496, 523, 619 |
| Bsu15I | ATCGAT | 1 cut(s) | 730 |
| BsuI | GTATCC | 1 cut(s) | 319 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BsuTUI | ATCGAT | 1 cut(s) | 730 |
| BtsCI | GGATG | 1 cut(s) | 429 |
| BtsI | GCAGTG | 1 cut(s) | 615 |
| BtsIMutI | CAGTG | 3 cut(s) | 180, 266, 615 |
| Cac8I | GCNNGC | 1 cut(s) | 64 |
| CciI | TCATGA | 1 cut(s) | 803 |
| CfoI | GCGC | 1 cut(s) | 79 |
| ClaI | ATCGAT | 1 cut(s) | 730 |
| Csp6I | GTAC | 4 cut(s) | 107, 160, 574, 628 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 242, 277 |
| CviAII | CATG | 6 cut(s) | 125, 182, 473, 616, 690, 804 |
| CviJI | RGCY | 9 cut(s) | 62, 214, 290, 356, 409, 591, 602, 683, 724 |
| CviKI_1 | RGCY | 9 cut(s) | 62, 214, 290, 356, 409, 591, 602, 683, 724 |
| CviQI | GTAC | 4 cut(s) | 107, 160, 574, 628 |
| DdeI | CTNAG | 3 cut(s) | 86, 258, 297 |
| DpnI | GATC | 5 cut(s) | 498, 525, 621, 711, 733 |
| DpnII | GATC | 5 cut(s) | 496, 523, 619, 709, 731 |
| DraI | TTTAAA | 1 cut(s) | 27 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| Eam1104I | CTCTTC | 1 cut(s) | 473 |
| EarI | CTCTTC | 1 cut(s) | 473 |
| Ecl136II | GAGCTC | 1 cut(s) | 724 |
| Eco105I | TACGTA | 1 cut(s) | 330 |
| Eco24I | GRGCYC | 1 cut(s) | 726 |
| Eco53kI | GAGCTC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 1 cut(s) | 156 |
| EcoICRI | GAGCTC | 1 cut(s) | 724 |
| EcoRI | GAATTC | 1 cut(s) | 341 |
| EcoT38I | GRGCYC | 1 cut(s) | 726 |
| FaeI | CATG | 6 cut(s) | 128, 185, 476, 619, 693, 807 |
| FaqI | GGGAC | 2 cut(s) | 161, 206 |
| FatI | CATG | 6 cut(s) | 124, 181, 472, 615, 689, 803 |
| Fnu4HI | GCNGC | 2 cut(s) | 91, 291 |
| FokI | GGATG | 1 cut(s) | 416 |
| FriOI | GRGCYC | 1 cut(s) | 726 |
| Fsp4HI | GCNGC | 2 cut(s) | 91, 291 |
| FspBI | CTAG | 2 cut(s) | 434, 557 |
| GlaI | GCGC | 1 cut(s) | 78 |
| GluI | GCNGC | 2 cut(s) | 91, 291 |
| GsuI | CTGGAG | 1 cut(s) | 134 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| HapII | CCGG | 1 cut(s) | 145 |
| HhaI | GCGC | 1 cut(s) | 79 |
| Hin1II | CATG | 6 cut(s) | 128, 185, 476, 619, 693, 807 |
| Hin6I | GCGC | 1 cut(s) | 77 |
| HinP1I | GCGC | 1 cut(s) | 77 |
| HincII | GTYRAC | 2 cut(s) | 53, 706 |
| HindII | GTYRAC | 2 cut(s) | 53, 706 |
| HinfI | GANTC | 3 cut(s) | 388, 487, 714 |
| HpaII | CCGG | 1 cut(s) | 145 |
| HphI | GGTGA | 2 cut(s) | 505, 649 |
| Hpy166II | GTNNAC | 3 cut(s) | 53, 398, 706 |
| Hpy188I | TCNGA | 3 cut(s) | 87, 298, 624 |
| Hpy188III | TCNNGA | 4 cut(s) | 245, 697, 735, 804 |
| Hpy8I | GTNNAC | 3 cut(s) | 53, 398, 706 |
| HpyAV | CCTTC | 2 cut(s) | 52, 763 |
| HpyCH4III | ACNGT | 1 cut(s) | 587 |
| HpyCH4IV | ACGT | 2 cut(s) | 162, 329 |
| HpyCH4V | TGCA | 4 cut(s) | 98, 398, 458, 781 |
| HpyF3I | CTNAG | 3 cut(s) | 86, 258, 297 |
| HpySE526I | ACGT | 2 cut(s) | 162, 329 |
| Hsp92II | CATG | 6 cut(s) | 128, 185, 476, 619, 693, 807 |
| HspAI | GCGC | 1 cut(s) | 77 |
| Kzo9I | GATC | 5 cut(s) | 496, 523, 619, 709, 731 |
| LmnI | GCTCC | 1 cut(s) | 688 |
| Lsp1109I | GCAGC | 1 cut(s) | 102 |
| LweI | GCATC | 2 cut(s) | 162, 325 |
| MaeI | CTAG | 2 cut(s) | 434, 557 |
| MaeII | ACGT | 2 cut(s) | 162, 329 |
| MaeIII | GTNAC | 3 cut(s) | 163, 436, 536 |
| MalI | GATC | 5 cut(s) | 498, 525, 621, 711, 733 |
| MboI | GATC | 5 cut(s) | 496, 523, 619, 709, 731 |
| MboII | GAAGA | 8 cut(s) | 23, 29, 380, 460, 592, 686, 689, 796 |
| MfeI | CAATTG | 1 cut(s) | 67 |
| MflI | RGATCY | 3 cut(s) | 496, 523, 619 |
| MhlI | GDGCHC | 3 cut(s) | 180, 400, 726 |
| MluCI | AATT | 6 cut(s) | 67, 341, 411, 564, 663, 787 |
| MlyI | GAGTC | 1 cut(s) | 382 |
| MmeI | TCCRAC | 2 cut(s) | 476, 710 |
| MnlI | CCTC | 9 cut(s) | 83, 178, 370, 476, 477, 514, 618, 630, 769 |
| MroXI | GAANNNNTTC | 1 cut(s) | 192 |
| MseI | TTAA | 4 cut(s) | 26, 135, 204, 567 |
| MspCI | CTTAAG | 1 cut(s) | 203 |
| MspI | CCGG | 1 cut(s) | 145 |
| MspR9I | CCNGG | 1 cut(s) | 146 |
| MunI | CAATTG | 1 cut(s) | 67 |
| Mva1269I | GAATGC | 1 cut(s) | 124 |
| MvnI | CGCG | 1 cut(s) | 77 |
| NciI | CCSGG | 1 cut(s) | 146 |
| NdeII | GATC | 5 cut(s) | 496, 523, 619, 709, 731 |
| NlaIII | CATG | 6 cut(s) | 128, 185, 476, 619, 693, 807 |
| NlaIV | GGNNCC | 3 cut(s) | 525, 621, 766 |
| NmuCI | GTSAC | 1 cut(s) | 163 |
| NspI | RCATGY | 1 cut(s) | 693 |
| PagI | TCATGA | 1 cut(s) | 803 |
| PciI | ACATGT | 1 cut(s) | 689 |
| PctI | GAATGC | 1 cut(s) | 124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 192 |
| PfeI | GAWTC | 2 cut(s) | 487, 714 |
| PfoI | TCCNGGA | 1 cut(s) | 144 |
| PkrI | GCNGC | 2 cut(s) | 92, 292 |
| Ple19I | CGATCG | 1 cut(s) | 712 |
| PleI | GAGTC | 1 cut(s) | 382 |
| PpsI | GAGTC | 1 cut(s) | 382 |
| Ppu21I | YACGTR | 2 cut(s) | 163, 330 |
| PscI | ACATGT | 1 cut(s) | 689 |
| PshBI | ATTAAT | 1 cut(s) | 567 |
| Psp124BI | GAGCTC | 1 cut(s) | 726 |
| PspN4I | GGNNCC | 3 cut(s) | 525, 621, 766 |
| PsuI | RGATCY | 3 cut(s) | 496, 523, 619 |
| PvuI | CGATCG | 1 cut(s) | 712 |
| RsaI | GTAC | 4 cut(s) | 108, 161, 575, 629 |
| RsaNI | GTAC | 4 cut(s) | 107, 160, 574, 628 |
| SacI | GAGCTC | 1 cut(s) | 726 |
| SaqAI | TTAA | 4 cut(s) | 26, 135, 204, 567 |
| SatI | GCNGC | 2 cut(s) | 91, 291 |
| Sau3AI | GATC | 5 cut(s) | 496, 523, 619, 709, 731 |
| ScaI | AGTACT | 1 cut(s) | 108 |
| SchI | GAGTC | 1 cut(s) | 382 |
| ScrFI | CCNGG | 1 cut(s) | 146 |
| SduI | GDGCHC | 3 cut(s) | 180, 400, 726 |
| SfaNI | GCATC | 2 cut(s) | 162, 325 |
| SfcI | CTRYAG | 1 cut(s) | 586 |
| SmlI | CTYRAG | 1 cut(s) | 203 |
| SmoI | CTYRAG | 1 cut(s) | 203 |
| SnaBI | TACGTA | 1 cut(s) | 330 |
| Sse9I | AATT | 6 cut(s) | 67, 341, 411, 564, 663, 787 |
| SsiI | CCGC | 1 cut(s) | 291 |
| SspMI | CTAG | 2 cut(s) | 434, 557 |
| SstI | GAGCTC | 1 cut(s) | 726 |
| StyD4I | CCNGG | 1 cut(s) | 144 |
| TaaI | ACNGT | 1 cut(s) | 587 |
| TaiI | ACGT | 2 cut(s) | 165, 332 |
| TaqI | TCGA | 4 cut(s) | 482, 547, 712, 730 |
| TasI | AATT | 6 cut(s) | 67, 341, 411, 564, 663, 787 |
| TatI | WGTACW | 1 cut(s) | 106 |
| TauI | GCSGC | 1 cut(s) | 293 |
| TfiI | GAWTC | 2 cut(s) | 487, 714 |
| Tru1I | TTAA | 4 cut(s) | 26, 135, 204, 567 |
| Tru9I | TTAA | 4 cut(s) | 26, 135, 204, 567 |
| TscAI | CASTG | 3 cut(s) | 180, 266, 615 |
| TseFI | GTSAC | 1 cut(s) | 163 |
| TseI | GCWGC | 1 cut(s) | 90 |
| Tsp45I | GTSAC | 1 cut(s) | 163 |
| TspDTI | ATGAA | 3 cut(s) | 23, 489, 789 |
| TspRI | CASTG | 3 cut(s) | 180, 266, 615 |
| Vha464I | CTTAAG | 1 cut(s) | 203 |
| VneI | GTGCAC | 1 cut(s) | 396 |
| VspI | ATTAAT | 1 cut(s) | 567 |
| XapI | RAATTY | 3 cut(s) | 341, 663, 787 |
| XceI | RCATGY | 1 cut(s) | 693 |
| XmnI | GAANNNNTTC | 1 cut(s) | 192 |
| XspI | CTAG | 2 cut(s) | 434, 557 |
| ZrmI | AGTACT | 1 cut(s) | 108 |