Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 298 - 402 | 7.9e-22 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1187 |
| AciI | CCGC | 1 cut(s) | 430 |
| AclWI | GGATC | 5 cut(s) | 132, 208, 579, 1079, 1092 |
| AcsI | RAATTY | 1 cut(s) | 608 |
| AdeI | CACNNNGTG | 1 cut(s) | 681 |
| AfaI | GTAC | 3 cut(s) | 940, 1196, 1378 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 738, 930, 988 |
| AgsI | TTSAA | 6 cut(s) | 466, 597, 604, 779, 862, 1387 |
| AhlI | ACTAGT | 1 cut(s) | 847 |
| AjnI | CCWGG | 1 cut(s) | 677 |
| Alw26I | GTCTC | 2 cut(s) | 34, 1327 |
| AlwI | GGATC | 5 cut(s) | 132, 208, 579, 1079, 1092 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1226 |
| AoxI | GGCC | 2 cut(s) | 809, 1245 |
| ApeKI | GCWGC | 5 cut(s) | 492, 495, 620, 1132, 1226 |
| ApoI | RAATTY | 1 cut(s) | 608 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 746, 778 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 866, 1019 |
| AspS9I | GGNCC | 1 cut(s) | 809 |
| AsuHPI | GGTGA | 1 cut(s) | 1003 |
| AsuII | TTCGAA | 1 cut(s) | 613 |
| AsuNHI | GCTAGC | 1 cut(s) | 398 |
| BamHI | GGATCC | 1 cut(s) | 1084 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 854, 886 |
| BbsI | GAAGAC | 3 cut(s) | 149, 850, 1403 |
| BbvCI | CCTCAGC | 1 cut(s) | 1209 |
| BbvI | GCAGC | 5 cut(s) | 479, 482, 607, 1144, 1213 |
| BccI | CCATC | 7 cut(s) | 351, 518, 557, 761, 800, 1075, 1153 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1187, 1221 |
| BciT130I | CCWGG | 1 cut(s) | 679 |
| BciVI | GTATCC | 1 cut(s) | 293 |
| BcoDI | GTCTC | 2 cut(s) | 34, 1327 |
| BcuI | ACTAGT | 1 cut(s) | 847 |
| BfaI | CTAG | 4 cut(s) | 147, 399, 848, 1317 |
| BfuI | GTATCC | 1 cut(s) | 293 |
| BglII | AGATCT | 1 cut(s) | 1059 |
| BisI | GCNGC | 5 cut(s) | 493, 496, 621, 1133, 1227 |
| BlsI | GCNGC | 5 cut(s) | 494, 497, 622, 1134, 1228 |
| Bme1390I | CCNGG | 1 cut(s) | 679 |
| BmgT120I | GGNCC | 1 cut(s) | 809 |
| BmiI | GGNNCC | 2 cut(s) | 898, 1086 |
| BmrFI | CCNGG | 1 cut(s) | 679 |
| BmsI | GCATC | 6 cut(s) | 544, 632, 652, 865, 975, 1244 |
| BmtI | GCTAGC | 1 cut(s) | 402 |
| BpiI | GAAGAC | 3 cut(s) | 149, 850, 1403 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 55, 87 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1209 |
| Bpu14I | TTCGAA | 1 cut(s) | 613 |
| BpuEI | CTTGAG | 1 cut(s) | 612 |
| Bsa29I | ATCGAT | 2 cut(s) | 255, 552 |
| BsaBI | GATNNNNATC | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 1 cut(s) | 663 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 738, 930, 988 |
| Bse3DI | GCAATG | 1 cut(s) | 1152 |
| Bse8I | GATNNNNATC | 1 cut(s) | 129 |
| BseBI | CCWGG | 1 cut(s) | 679 |
| BseCI | ATCGAT | 2 cut(s) | 255, 552 |
| BseDI | CCNNGG | 1 cut(s) | 663 |
| BseJI | GATNNNNATC | 1 cut(s) | 129 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 738, 930, 988 |
| BseMI | GCAATG | 1 cut(s) | 1152 |
| BseMII | CTCAG | 6 cut(s) | 86, 191, 1100, 1200, 1319, 1322 |
| BseRI | GAGGAG | 2 cut(s) | 548, 1304 |
| BseXI | GCAGC | 5 cut(s) | 479, 482, 607, 1144, 1213 |
| BsgI | GTGCAG | 1 cut(s) | 1172 |
| BshFI | GGCC | 2 cut(s) | 811, 1247 |
| BshVI | ATCGAT | 2 cut(s) | 255, 552 |
| BslFI | GGGAC | 2 cut(s) | 531, 1015 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 738, 930, 988 |
| BsmAI | GTCTC | 2 cut(s) | 34, 1327 |
| BsmFI | GGGAC | 2 cut(s) | 531, 1015 |
| BsnI | GGCC | 2 cut(s) | 811, 1247 |
| Bsp119I | TTCGAA | 1 cut(s) | 613 |
| Bsp143I | GATC | 5 cut(s) | 124, 213, 584, 1059, 1084 |
| BspACI | CCGC | 1 cut(s) | 430 |
| BspANI | GGCC | 2 cut(s) | 811, 1247 |
| BspCNI | CTCAG | 6 cut(s) | 85, 190, 1101, 1201, 1318, 1323 |
| BspDI | ATCGAT | 2 cut(s) | 255, 552 |
| BspHI | TCATGA | 2 cut(s) | 60, 1323 |
| BspLI | GGNNCC | 2 cut(s) | 898, 1086 |
| BspOI | GCTAGC | 1 cut(s) | 402 |
| BspPI | GGATC | 5 cut(s) | 132, 208, 579, 1079, 1092 |
| BspT104I | TTCGAA | 1 cut(s) | 613 |
| BsrDI | GCAATG | 1 cut(s) | 1152 |
| BssECI | CCNNGG | 1 cut(s) | 663 |
| BssMI | GATC | 5 cut(s) | 124, 213, 584, 1059, 1084 |
| BssT1I | CCWWGG | 1 cut(s) | 663 |
| Bst2UI | CCWGG | 1 cut(s) | 679 |
| Bst4CI | ACNGT | 5 cut(s) | 81, 545, 569, 762, 1285 |
| BstBI | TTCGAA | 1 cut(s) | 613 |
| BstC8I | GCNNGC | 1 cut(s) | 400 |
| BstDEI | CTNAG | 6 cut(s) | 72, 177, 1109, 1209, 1305, 1331 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 736 |
| BstKTI | GATC | 5 cut(s) | 127, 216, 587, 1062, 1087 |
| BstMAI | GTCTC | 2 cut(s) | 34, 1327 |
| BstMBI | GATC | 5 cut(s) | 124, 213, 584, 1059, 1084 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1232 |
| BstNI | CCWGG | 1 cut(s) | 679 |
| BstSCI | CCNGG | 1 cut(s) | 677 |
| BstV1I | GCAGC | 5 cut(s) | 479, 482, 607, 1144, 1213 |
| BstV2I | GAAGAC | 3 cut(s) | 149, 850, 1403 |
| BstX2I | RGATCY | 4 cut(s) | 124, 584, 1059, 1084 |
| BstYI | RGATCY | 4 cut(s) | 124, 584, 1059, 1084 |
| Bsu15I | ATCGAT | 2 cut(s) | 255, 552 |
| BsuI | GTATCC | 1 cut(s) | 293 |
| BsuRI | GGCC | 2 cut(s) | 811, 1247 |
| BsuTUI | ATCGAT | 2 cut(s) | 255, 552 |
| BtsI | GCAGTG | 1 cut(s) | 720 |
| BtsIMutI | CAGTG | 3 cut(s) | 195, 720, 898 |
| Cac8I | GCNNGC | 1 cut(s) | 400 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1226 |
| CciI | TCATGA | 2 cut(s) | 60, 1323 |
| Cfr13I | GGNCC | 1 cut(s) | 809 |
| ClaI | ATCGAT | 2 cut(s) | 255, 552 |
| CsiI | ACCWGGT | 1 cut(s) | 677 |
| Csp6I | GTAC | 3 cut(s) | 939, 1195, 1377 |
| CviQI | GTAC | 3 cut(s) | 939, 1195, 1377 |
| DdeI | CTNAG | 6 cut(s) | 72, 177, 1109, 1209, 1305, 1331 |
| DpnI | GATC | 5 cut(s) | 126, 215, 586, 1061, 1086 |
| DpnII | GATC | 5 cut(s) | 124, 213, 584, 1059, 1084 |
| DraIII | CACNNNGTG | 1 cut(s) | 681 |
| Eco130I | CCWWGG | 1 cut(s) | 663 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 736 |
| EcoRII | CCWGG | 1 cut(s) | 677 |
| EcoT14I | CCWWGG | 1 cut(s) | 663 |
| EcoT22I | ATGCAT | 1 cut(s) | 968 |
| ErhI | CCWWGG | 1 cut(s) | 663 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 716, 748 |
| FaqI | GGGAC | 2 cut(s) | 531, 1015 |
| FauI | CCCGC | 1 cut(s) | 423 |
| Fnu4HI | GCNGC | 5 cut(s) | 493, 496, 621, 1133, 1227 |
| Fsp4HI | GCNGC | 5 cut(s) | 493, 496, 621, 1133, 1227 |
| FspBI | CTAG | 4 cut(s) | 147, 399, 848, 1317 |
| GluI | GCNGC | 5 cut(s) | 493, 496, 621, 1133, 1227 |
| HaeIII | GGCC | 2 cut(s) | 811, 1247 |
| HincII | GTYRAC | 1 cut(s) | 1371 |
| HindII | GTYRAC | 1 cut(s) | 1371 |
| HindIII | AAGCTT | 3 cut(s) | 187, 332, 1388 |
| HinfI | GANTC | 2 cut(s) | 341, 406 |
| HphI | GGTGA | 1 cut(s) | 1003 |
| Hpy166II | GTNNAC | 6 cut(s) | 89, 378, 939, 994, 1179, 1371 |
| Hpy188I | TCNGA | 7 cut(s) | 180, 584, 979, 1089, 1110, 1308, 1395 |
| Hpy188III | TCNNGA | 5 cut(s) | 61, 629, 779, 1324, 1354 |
| Hpy8I | GTNNAC | 6 cut(s) | 89, 378, 939, 994, 1179, 1371 |
| HpyAV | CCTTC | 4 cut(s) | 102, 603, 829, 935 |
| HpyCH4III | ACNGT | 5 cut(s) | 81, 545, 569, 762, 1285 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1232 |
| HpyF3I | CTNAG | 6 cut(s) | 72, 177, 1109, 1209, 1305, 1331 |
| Kzo9I | GATC | 5 cut(s) | 124, 213, 584, 1059, 1084 |
| LmnI | GCTCC | 1 cut(s) | 902 |
| LpnPI | CCDG | 6 cut(s) | 432, 632, 664, 691, 825, 1233 |
| Lsp1109I | GCAGC | 5 cut(s) | 479, 482, 607, 1144, 1213 |
| LweI | GCATC | 6 cut(s) | 544, 632, 652, 865, 975, 1244 |
| MabI | ACCWGGT | 1 cut(s) | 677 |
| MaeI | CTAG | 4 cut(s) | 147, 399, 848, 1317 |
| MaeIII | GTNAC | 2 cut(s) | 67, 907 |
| MalI | GATC | 5 cut(s) | 126, 215, 586, 1061, 1086 |
| MboI | GATC | 5 cut(s) | 124, 213, 584, 1059, 1084 |
| MboII | GAAGA | 7 cut(s) | 154, 808, 855, 874, 1024, 1027, 1408 |
| MfeI | CAATTG | 3 cut(s) | 262, 324, 1239 |
| MflI | RGATCY | 4 cut(s) | 124, 584, 1059, 1084 |
| MlyI | GAGTC | 1 cut(s) | 350 |
| MmeI | TCCRAC | 1 cut(s) | 1023 |
| Mph1103I | ATGCAT | 1 cut(s) | 968 |
| MroXI | GAANNNNTTC | 2 cut(s) | 866, 1019 |
| MseI | TTAA | 6 cut(s) | 239, 288, 507, 519, 573, 723 |
| MslI | CAYNNNNRTG | 1 cut(s) | 648 |
| MspR9I | CCNGG | 1 cut(s) | 679 |
| MunI | CAATTG | 3 cut(s) | 262, 324, 1239 |
| MvaI | CCWGG | 1 cut(s) | 679 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1232 |
| NdeII | GATC | 5 cut(s) | 124, 213, 584, 1059, 1084 |
| NheI | GCTAGC | 1 cut(s) | 398 |
| NlaIV | GGNNCC | 2 cut(s) | 898, 1086 |
| NmuCI | GTSAC | 1 cut(s) | 907 |
| NsiI | ATGCAT | 1 cut(s) | 968 |
| NspV | TTCGAA | 1 cut(s) | 613 |
| PagI | TCATGA | 2 cut(s) | 60, 1323 |
| PdmI | GAANNNNTTC | 2 cut(s) | 866, 1019 |
| PfeI | GAWTC | 1 cut(s) | 406 |
| PkrI | GCNGC | 5 cut(s) | 494, 497, 622, 1134, 1228 |
| PleI | GAGTC | 1 cut(s) | 349 |
| PpsI | GAGTC | 1 cut(s) | 349 |
| PsiI | TTATAA | 1 cut(s) | 1187 |
| Psp6I | CCWGG | 1 cut(s) | 677 |
| PspGI | CCWGG | 1 cut(s) | 677 |
| PspN4I | GGNNCC | 2 cut(s) | 898, 1086 |
| PspPI | GGNCC | 1 cut(s) | 809 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 677, 709 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1226 |
| PsuI | RGATCY | 4 cut(s) | 124, 584, 1059, 1084 |
| RsaI | GTAC | 3 cut(s) | 940, 1196, 1378 |
| RsaNI | GTAC | 3 cut(s) | 939, 1195, 1377 |
| RseI | CAYNNNNRTG | 1 cut(s) | 648 |
| SaqAI | TTAA | 6 cut(s) | 239, 288, 507, 519, 573, 723 |
| SatI | GCNGC | 5 cut(s) | 493, 496, 621, 1133, 1227 |
| Sau3AI | GATC | 5 cut(s) | 124, 213, 584, 1059, 1084 |
| Sau96I | GGNCC | 1 cut(s) | 809 |
| SchI | GAGTC | 1 cut(s) | 350 |
| ScrFI | CCNGG | 1 cut(s) | 679 |
| SexAI | ACCWGGT | 1 cut(s) | 677 |
| SfaNI | GCATC | 6 cut(s) | 544, 632, 652, 865, 975, 1244 |
| SfuI | TTCGAA | 1 cut(s) | 613 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 648 |
| SmlI | CTYRAG | 1 cut(s) | 627 |
| SmoI | CTYRAG | 1 cut(s) | 627 |
| SpeI | ACTAGT | 1 cut(s) | 847 |
| SsiI | CCGC | 1 cut(s) | 430 |
| SspI | AATATT | 2 cut(s) | 160, 1312 |
| SspMI | CTAG | 4 cut(s) | 147, 399, 848, 1317 |
| StyD4I | CCNGG | 1 cut(s) | 677 |
| StyI | CCWWGG | 1 cut(s) | 663 |
| TaaI | ACNGT | 5 cut(s) | 81, 545, 569, 762, 1285 |
| TaqI | TCGA | 7 cut(s) | 22, 212, 255, 552, 613, 1023, 1353 |
| TfiI | GAWTC | 1 cut(s) | 406 |
| Tru1I | TTAA | 6 cut(s) | 239, 288, 507, 519, 573, 723 |
| Tru9I | TTAA | 6 cut(s) | 239, 288, 507, 519, 573, 723 |
| TscAI | CASTG | 3 cut(s) | 202, 720, 898 |
| TseFI | GTSAC | 1 cut(s) | 907 |
| TseI | GCWGC | 5 cut(s) | 492, 495, 620, 1132, 1226 |
| Tsp45I | GTSAC | 1 cut(s) | 907 |
| TspDTI | ATGAA | 7 cut(s) | 30, 49, 688, 1025, 1067, 1312, 1340 |
| TspRI | CASTG | 3 cut(s) | 202, 720, 898 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 736 |
| XapI | RAATTY | 1 cut(s) | 608 |
| XmnI | GAANNNNTTC | 2 cut(s) | 866, 1019 |
| XspI | CTAG | 4 cut(s) | 147, 399, 848, 1317 |
| Zsp2I | ATGCAT | 1 cut(s) | 968 |