Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 446 - 547 | 2.1e-15 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 257, 431 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 670 |
| AccIII | TCCGGA | 1 cut(s) | 1252 |
| AciI | CCGC | 6 cut(s) | 437, 533, 536, 539, 831, 1240 |
| AclWI | GGATC | 4 cut(s) | 323, 336, 694, 707 |
| AcoI | YGGCCR | 1 cut(s) | 213 |
| AcsI | RAATTY | 3 cut(s) | 276, 1404, 1538 |
| AdeI | CACNNNGTG | 1 cut(s) | 1095 |
| AfaI | GTAC | 3 cut(s) | 243, 1521, 1535 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 621, 670, 1014 |
| AflII | CTTAAG | 1 cut(s) | 281 |
| AgsI | TTSAA | 8 cut(s) | 391, 496, 560, 635, 769, 859, 1132, 1487 |
| AluBI | AGCT | 3 cut(s) | 955, 1456, 1570 |
| AluI | AGCT | 3 cut(s) | 955, 1456, 1570 |
| Alw21I | GWGCWC | 2 cut(s) | 874, 1572 |
| Alw26I | GTCTC | 4 cut(s) | 91, 317, 1207, 1547 |
| AlwI | GGATC | 4 cut(s) | 323, 336, 694, 707 |
| Ama87I | CYCGRG | 1 cut(s) | 301 |
| Aor13HI | TCCGGA | 1 cut(s) | 1252 |
| AoxI | GGCC | 3 cut(s) | 213, 660, 1158 |
| ApoI | RAATTY | 3 cut(s) | 276, 1404, 1538 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 206, 471 |
| AspA2I | CCTAGG | 1 cut(s) | 1529 |
| AspLEI | GCGC | 1 cut(s) | 911 |
| AspS9I | GGNCC | 6 cut(s) | 110, 143, 368, 624, 661, 1247 |
| AsuC2I | CCSGG | 3 cut(s) | 302, 303, 1010 |
| AsuHPI | GGTGA | 4 cut(s) | 175, 746, 1234, 1504 |
| AvaI | CYCGRG | 1 cut(s) | 301 |
| AvaII | GGWCC | 5 cut(s) | 110, 143, 368, 624, 1247 |
| AvrII | CCTAGG | 1 cut(s) | 1529 |
| BamHI | GGATCC | 2 cut(s) | 328, 699 |
| BanII | GRGCYC | 2 cut(s) | 892, 1572 |
| BbsI | GAAGAC | 1 cut(s) | 474 |
| Bbv12I | GWGCWC | 2 cut(s) | 874, 1572 |
| BccI | CCATC | 4 cut(s) | 355, 935, 1150, 1575 |
| BceAI | ACGGC | 1 cut(s) | 675 |
| BciVI | GTATCC | 1 cut(s) | 1082 |
| BclI | TGATCA | 1 cut(s) | 460 |
| BcnI | CCSGG | 3 cut(s) | 302, 303, 1010 |
| BcoDI | GTCTC | 4 cut(s) | 91, 317, 1207, 1547 |
| BfaI | CTAG | 5 cut(s) | 309, 755, 816, 1530, 1562 |
| BfrI | CTTAAG | 1 cut(s) | 281 |
| BfuI | GTATCC | 1 cut(s) | 1082 |
| BisI | GCNGC | 2 cut(s) | 534, 537 |
| BlnI | CCTAGG | 1 cut(s) | 1529 |
| BlsI | GCNGC | 2 cut(s) | 535, 538 |
| BmcAI | AGTACT | 1 cut(s) | 1521 |
| Bme1390I | CCNGG | 3 cut(s) | 302, 303, 1010 |
| Bme18I | GGWCC | 5 cut(s) | 110, 143, 368, 624, 1247 |
| BmeT110I | CYCGRG | 1 cut(s) | 301 |
| BmgT120I | GGNCC | 6 cut(s) | 110, 143, 368, 624, 661, 1247 |
| BmiI | GGNNCC | 5 cut(s) | 111, 144, 330, 701, 1248 |
| BmrFI | CCNGG | 3 cut(s) | 302, 303, 1010 |
| BmsI | GCATC | 5 cut(s) | 154, 432, 961, 1104, 1303 |
| BpiI | GAAGAC | 1 cut(s) | 474 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1157, 1189, 1187, 1219, 1273, 1305 |
| BpuEI | CTTGAG | 1 cut(s) | 1442 |
| BpuMI | CCSGG | 3 cut(s) | 302, 303, 1010 |
| BsaBI | GATNNNNATC | 1 cut(s) | 495 |
| BsaI | GGTCTC | 1 cut(s) | 1207 |
| BsaJI | CCNNGG | 4 cut(s) | 116, 301, 1008, 1529 |
| BsaWI | WCCGGW | 2 cut(s) | 370, 1252 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 127, 157, 357, 387, 1327, 1357 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 621, 670, 1014 |
| Bse3DI | GCAATG | 2 cut(s) | 226, 834 |
| Bse8I | GATNNNNATC | 1 cut(s) | 495 |
| BseAI | TCCGGA | 1 cut(s) | 1252 |
| BseDI | CCNNGG | 4 cut(s) | 116, 301, 1008, 1529 |
| BseGI | GGATG | 7 cut(s) | 366, 918, 946, 1004, 1068, 1267, 1586 |
| BseJI | GATNNNNATC | 1 cut(s) | 495 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 621, 670, 1014 |
| BseMI | GCAATG | 2 cut(s) | 226, 834 |
| BseMII | CTCAG | 1 cut(s) | 1155 |
| BseRI | GAGGAG | 4 cut(s) | 20, 105, 1211, 1613 |
| BshFI | GGCC | 3 cut(s) | 215, 662, 1160 |
| BsiHKAI | GWGCWC | 2 cut(s) | 874, 1572 |
| BsiHKCI | CYCGRG | 1 cut(s) | 301 |
| BsiSI | CCGG | 5 cut(s) | 152, 302, 371, 1010, 1253 |
| BslFI | GGGAC | 2 cut(s) | 280, 1598 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 621, 670, 1014 |
| BsmAI | GTCTC | 4 cut(s) | 91, 317, 1207, 1547 |
| BsmFI | GGGAC | 2 cut(s) | 280, 1598 |
| BsmI | GAATGC | 2 cut(s) | 224, 1105 |
| BsnI | GGCC | 3 cut(s) | 215, 662, 1160 |
| Bso31I | GGTCTC | 1 cut(s) | 1207 |
| BsoBI | CYCGRG | 1 cut(s) | 301 |
| Bsp1286I | GDGCHC | 3 cut(s) | 874, 892, 1572 |
| Bsp13I | TCCGGA | 1 cut(s) | 1252 |
| Bsp143I | GATC | 4 cut(s) | 180, 328, 460, 699 |
| BspACI | CCGC | 6 cut(s) | 437, 533, 536, 539, 831, 1240 |
| BspANI | GGCC | 3 cut(s) | 215, 662, 1160 |
| BspCNI | CTCAG | 1 cut(s) | 1156 |
| BspEI | TCCGGA | 1 cut(s) | 1252 |
| BspLI | GGNNCC | 5 cut(s) | 111, 144, 330, 701, 1248 |
| BspPI | GGATC | 4 cut(s) | 323, 336, 694, 707 |
| BspQI | GCTCTTC | 1 cut(s) | 1560 |
| BspTI | CTTAAG | 1 cut(s) | 281 |
| BspTNI | GGTCTC | 1 cut(s) | 1207 |
| BsrDI | GCAATG | 2 cut(s) | 226, 834 |
| BssECI | CCNNGG | 4 cut(s) | 116, 301, 1008, 1529 |
| BssMI | GATC | 4 cut(s) | 180, 328, 460, 699 |
| BssT1I | CCWWGG | 1 cut(s) | 1529 |
| Bst4CI | ACNGT | 2 cut(s) | 805, 1372 |
| Bst6I | CTCTTC | 3 cut(s) | 48, 555, 1560 |
| BstAFI | CTTAAG | 1 cut(s) | 281 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 228 |
| BstC8I | GCNNGC | 1 cut(s) | 224 |
| BstDEI | CTNAG | 6 cut(s) | 168, 238, 956, 1152, 1164, 1364 |
| BstF5I | GGATG | 7 cut(s) | 366, 918, 946, 1004, 1068, 1267, 1586 |
| BstHHI | GCGC | 1 cut(s) | 911 |
| BstKTI | GATC | 4 cut(s) | 183, 331, 463, 702 |
| BstMAI | GTCTC | 4 cut(s) | 91, 317, 1207, 1547 |
| BstMBI | GATC | 4 cut(s) | 180, 328, 460, 699 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 228, 1421 |
| BstSCI | CCNGG | 3 cut(s) | 300, 301, 1008 |
| BstV2I | GAAGAC | 1 cut(s) | 474 |
| BstX2I | RGATCY | 2 cut(s) | 328, 699 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1243 |
| BstYI | RGATCY | 2 cut(s) | 328, 699 |
| BsuI | GTATCC | 1 cut(s) | 1082 |
| BsuRI | GGCC | 3 cut(s) | 215, 662, 1160 |
| BtsCI | GGATG | 7 cut(s) | 366, 918, 946, 1004, 1068, 1267, 1586 |
| BtsIMutI | CAGTG | 1 cut(s) | 1377 |
| Cac8I | GCNNGC | 1 cut(s) | 224 |
| CfoI | GCGC | 1 cut(s) | 911 |
| Cfr13I | GGNCC | 6 cut(s) | 110, 143, 368, 624, 661, 1247 |
| Cfr9I | CCCGGG | 1 cut(s) | 301 |
| Csp6I | GTAC | 3 cut(s) | 242, 1520, 1534 |
| CviAII | CATG | 5 cut(s) | 211, 263, 649, 844, 901 |
| CviQI | GTAC | 3 cut(s) | 242, 1520, 1534 |
| DdeI | CTNAG | 6 cut(s) | 168, 238, 956, 1152, 1164, 1364 |
| DpnI | GATC | 4 cut(s) | 182, 330, 462, 701 |
| DpnII | GATC | 4 cut(s) | 180, 328, 460, 699 |
| DraI | TTTAAA | 3 cut(s) | 1138, 1192, 1410 |
| DraIII | CACNNNGTG | 1 cut(s) | 1095 |
| EaeI | YGGCCR | 1 cut(s) | 213 |
| Eam1104I | CTCTTC | 3 cut(s) | 48, 555, 1560 |
| EarI | CTCTTC | 3 cut(s) | 48, 555, 1560 |
| Ecl136II | GAGCTC | 1 cut(s) | 1570 |
| Eco130I | CCWWGG | 1 cut(s) | 1529 |
| Eco24I | GRGCYC | 2 cut(s) | 892, 1572 |
| Eco31I | GGTCTC | 1 cut(s) | 1207 |
| Eco47I | GGWCC | 5 cut(s) | 110, 143, 368, 624, 1247 |
| Eco53kI | GAGCTC | 1 cut(s) | 1570 |
| Eco88I | CYCGRG | 1 cut(s) | 301 |
| EcoICRI | GAGCTC | 1 cut(s) | 1570 |
| EcoO109I | RGGNCCY | 2 cut(s) | 110, 1247 |
| EcoRI | GAATTC | 1 cut(s) | 276 |
| EcoT14I | CCWWGG | 1 cut(s) | 1529 |
| EcoT22I | ATGCAT | 1 cut(s) | 1645 |
| EcoT38I | GRGCYC | 2 cut(s) | 892, 1572 |
| ErhI | CCWWGG | 1 cut(s) | 1529 |
| FaeI | CATG | 5 cut(s) | 214, 266, 652, 847, 904 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1060, 1092 |
| FaqI | GGGAC | 2 cut(s) | 280, 1598 |
| FatI | CATG | 5 cut(s) | 210, 262, 648, 843, 900 |
| FauI | CCCGC | 1 cut(s) | 1233 |
| FauNDI | CATATG | 1 cut(s) | 1108 |
| FbaI | TGATCA | 1 cut(s) | 460 |
| Fnu4HI | GCNGC | 2 cut(s) | 534, 537 |
| FokI | GGATG | 7 cut(s) | 373, 905, 953, 991, 1075, 1274, 1593 |
| FriOI | GRGCYC | 2 cut(s) | 892, 1572 |
| Fsp4HI | GCNGC | 2 cut(s) | 534, 537 |
| FspBI | CTAG | 5 cut(s) | 309, 755, 816, 1530, 1562 |
| GlaI | GCGC | 1 cut(s) | 910 |
| GluI | GCNGC | 2 cut(s) | 534, 537 |
| HaeIII | GGCC | 3 cut(s) | 215, 662, 1160 |
| HapII | CCGG | 5 cut(s) | 152, 302, 371, 1010, 1253 |
| HhaI | GCGC | 1 cut(s) | 911 |
| Hin1II | CATG | 5 cut(s) | 214, 266, 652, 847, 904 |
| Hin6I | GCGC | 1 cut(s) | 909 |
| HinP1I | GCGC | 1 cut(s) | 909 |
| HincII | GTYRAC | 1 cut(s) | 808 |
| HindII | GTYRAC | 1 cut(s) | 808 |
| HinfI | GANTC | 6 cut(s) | 496, 769, 855, 1022, 1172, 1495 |
| HpaII | CCGG | 5 cut(s) | 152, 302, 371, 1010, 1253 |
| HphI | GGTGA | 4 cut(s) | 175, 746, 1234, 1504 |
| Hpy166II | GTNNAC | 1 cut(s) | 808 |
| Hpy188I | TCNGA | 3 cut(s) | 120, 333, 1165 |
| Hpy188III | TCNNGA | 7 cut(s) | 464, 476, 488, 755, 1204, 1253, 1562 |
| Hpy8I | GTNNAC | 1 cut(s) | 808 |
| Hpy99I | CGWCG | 1 cut(s) | 274 |
| HpyAV | CCTTC | 2 cut(s) | 41, 559 |
| HpyCH4III | ACNGT | 2 cut(s) | 805, 1372 |
| HpyCH4IV | ACGT | 1 cut(s) | 1349 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 228, 1421 |
| HpyF3I | CTNAG | 6 cut(s) | 168, 238, 956, 1152, 1164, 1364 |
| HpySE526I | ACGT | 1 cut(s) | 1349 |
| Hsp92II | CATG | 5 cut(s) | 214, 266, 652, 847, 904 |
| HspAI | GCGC | 1 cut(s) | 909 |
| Kpn2I | TCCGGA | 1 cut(s) | 1252 |
| Ksp22I | TGATCA | 1 cut(s) | 460 |
| Kzo9I | GATC | 4 cut(s) | 180, 328, 460, 699 |
| LguI | GCTCTTC | 1 cut(s) | 1560 |
| LmnI | GCTCC | 1 cut(s) | 952 |
| LpnPI | CCDG | 5 cut(s) | 165, 315, 384, 1023, 1266 |
| LweI | GCATC | 5 cut(s) | 154, 432, 961, 1104, 1303 |
| MaeI | CTAG | 5 cut(s) | 309, 755, 816, 1530, 1562 |
| MaeII | ACGT | 1 cut(s) | 1349 |
| MalI | GATC | 4 cut(s) | 182, 330, 462, 701 |
| MboI | GATC | 4 cut(s) | 180, 328, 460, 699 |
| MflI | RGATCY | 2 cut(s) | 328, 699 |
| MhlI | GDGCHC | 3 cut(s) | 874, 892, 1572 |
| MlyI | GAGTC | 2 cut(s) | 1031, 1166 |
| MmeI | TCCRAC | 3 cut(s) | 999, 1370, 1530 |
| Mph1103I | ATGCAT | 1 cut(s) | 1645 |
| MroI | TCCGGA | 1 cut(s) | 1252 |
| MroXI | GAANNNNTTC | 2 cut(s) | 206, 471 |
| MslI | CAYNNNNRTG | 1 cut(s) | 732 |
| MspCI | CTTAAG | 1 cut(s) | 281 |
| MspI | CCGG | 5 cut(s) | 152, 302, 371, 1010, 1253 |
| MspR9I | CCNGG | 3 cut(s) | 302, 303, 1010 |
| Mva1269I | GAATGC | 2 cut(s) | 224, 1105 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 228, 1421 |
| NciI | CCSGG | 3 cut(s) | 302, 303, 1010 |
| NdeI | CATATG | 1 cut(s) | 1108 |
| NdeII | GATC | 4 cut(s) | 180, 328, 460, 699 |
| NlaIII | CATG | 5 cut(s) | 214, 266, 652, 847, 904 |
| NlaIV | GGNNCC | 5 cut(s) | 111, 144, 330, 701, 1248 |
| NmeAIII | GCCGAG | 1 cut(s) | 1551 |
| NmuCI | GTSAC | 7 cut(s) | 376, 914, 1087, 1169, 1222, 1350, 1478 |
| NsiI | ATGCAT | 1 cut(s) | 1645 |
| PciSI | GCTCTTC | 1 cut(s) | 1560 |
| PctI | GAATGC | 2 cut(s) | 224, 1105 |
| PdmI | GAANNNNTTC | 2 cut(s) | 206, 471 |
| PfeI | GAWTC | 4 cut(s) | 496, 769, 855, 1495 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 670 |
| PkrI | GCNGC | 2 cut(s) | 535, 538 |
| PleI | GAGTC | 2 cut(s) | 1030, 1166 |
| PpsI | GAGTC | 2 cut(s) | 1030, 1166 |
| PpuMI | RGGWCCY | 2 cut(s) | 110, 1247 |
| PsiI | TTATAA | 2 cut(s) | 257, 431 |
| Psp124BI | GAGCTC | 1 cut(s) | 1572 |
| Psp5II | RGGWCCY | 2 cut(s) | 110, 1247 |
| PspN4I | GGNNCC | 5 cut(s) | 111, 144, 330, 701, 1248 |
| PspPI | GGNCC | 6 cut(s) | 110, 143, 368, 624, 661, 1247 |
| PspPPI | RGGWCCY | 2 cut(s) | 110, 1247 |
| PsuI | RGATCY | 2 cut(s) | 328, 699 |
| RsaI | GTAC | 3 cut(s) | 243, 1521, 1535 |
| RsaNI | GTAC | 3 cut(s) | 242, 1520, 1534 |
| RseI | CAYNNNNRTG | 1 cut(s) | 732 |
| SacI | GAGCTC | 1 cut(s) | 1572 |
| SapI | GCTCTTC | 1 cut(s) | 1560 |
| SatI | GCNGC | 2 cut(s) | 534, 537 |
| Sau3AI | GATC | 4 cut(s) | 180, 328, 460, 699 |
| Sau96I | GGNCC | 6 cut(s) | 110, 143, 368, 624, 661, 1247 |
| ScaI | AGTACT | 1 cut(s) | 1521 |
| SchI | GAGTC | 2 cut(s) | 1031, 1166 |
| ScrFI | CCNGG | 3 cut(s) | 302, 303, 1010 |
| SduI | GDGCHC | 3 cut(s) | 874, 892, 1572 |
| SfaNI | GCATC | 5 cut(s) | 154, 432, 961, 1104, 1303 |
| SinI | GGWCC | 5 cut(s) | 110, 143, 368, 624, 1247 |
| SmaI | CCCGGG | 1 cut(s) | 303 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 732 |
| SmlI | CTYRAG | 2 cut(s) | 281, 1457 |
| SmoI | CTYRAG | 2 cut(s) | 281, 1457 |
| SsiI | CCGC | 6 cut(s) | 437, 533, 536, 539, 831, 1240 |
| SspI | AATATT | 2 cut(s) | 1037, 1472 |
| SspMI | CTAG | 5 cut(s) | 309, 755, 816, 1530, 1562 |
| SstI | GAGCTC | 1 cut(s) | 1572 |
| StyD4I | CCNGG | 3 cut(s) | 300, 301, 1008 |
| StyI | CCWWGG | 1 cut(s) | 1529 |
| TaaI | ACNGT | 2 cut(s) | 805, 1372 |
| TaiI | ACGT | 1 cut(s) | 1352 |
| TaqI | TCGA | 4 cut(s) | 475, 1205, 1277, 1524 |
| TatI | WGTACW | 1 cut(s) | 1519 |
| TauI | GCSGC | 2 cut(s) | 536, 539 |
| TfiI | GAWTC | 4 cut(s) | 496, 769, 855, 1495 |
| TscAI | CASTG | 1 cut(s) | 1377 |
| TseFI | GTSAC | 7 cut(s) | 376, 914, 1087, 1169, 1222, 1350, 1478 |
| Tsp45I | GTSAC | 7 cut(s) | 376, 914, 1087, 1169, 1222, 1350, 1478 |
| TspDTI | ATGAA | 4 cut(s) | 199, 251, 860, 1466 |
| TspGWI | ACGGA | 1 cut(s) | 965 |
| TspMI | CCCGGG | 1 cut(s) | 301 |
| TspRI | CASTG | 1 cut(s) | 1377 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 670 |
| Vha464I | CTTAAG | 1 cut(s) | 281 |
| VpaK11BI | GGWCC | 5 cut(s) | 110, 143, 368, 624, 1247 |
| XapI | RAATTY | 3 cut(s) | 276, 1404, 1538 |
| XbaI | TCTAGA | 2 cut(s) | 754, 1561 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 153 |
| XmaI | CCCGGG | 1 cut(s) | 301 |
| XmaJI | CCTAGG | 1 cut(s) | 1529 |
| XmnI | GAANNNNTTC | 2 cut(s) | 206, 471 |
| XspI | CTAG | 5 cut(s) | 309, 755, 816, 1530, 1562 |
| ZrmI | AGTACT | 1 cut(s) | 1521 |
| Zsp2I | ATGCAT | 1 cut(s) | 1645 |