BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1481 |
| AccI | GTMKAC | 2 cut(s) | 512, 942 |
| AccII | CGCG | 1 cut(s) | 247 |
| AciI | CCGC | 5 cut(s) | 245, 247, 311, 860, 1211 |
| AclWI | GGATC | 3 cut(s) | 173, 1151, 1164 |
| AcoI | YGGCCR | 1 cut(s) | 1524 |
| AcsI | RAATTY | 8 cut(s) | 33, 55, 281, 323, 335, 823, 1032, 1184 |
| AcuI | CTGAAG | 2 cut(s) | 858, 1356 |
| AdeI | CACNNNGTG | 1 cut(s) | 1280 |
| AfaI | GTAC | 3 cut(s) | 170, 1303, 1567 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 392, 1048 |
| AflII | CTTAAG | 1 cut(s) | 491 |
| AflIII | ACRYGT | 1 cut(s) | 1354 |
| AgsI | TTSAA | 7 cut(s) | 206, 265, 656, 923, 977, 1096, 1408 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 73, 105 |
| AleI | CACNNNNGTG | 2 cut(s) | 477, 728 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1109, 1141 |
| Alw21I | GWGCWC | 3 cut(s) | 47, 1475, 1639 |
| Alw26I | GTCTC | 1 cut(s) | 1653 |
| AlwI | GGATC | 3 cut(s) | 173, 1151, 1164 |
| AoxI | GGCC | 5 cut(s) | 68, 505, 1245, 1524, 1577 |
| ApaI | GGGCCC | 1 cut(s) | 509 |
| ApeKI | GCWGC | 4 cut(s) | 128, 1148, 1229, 1232 |
| ApoI | RAATTY | 8 cut(s) | 33, 55, 281, 323, 335, 823, 1032, 1184 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1244, 1276 |
| AseI | ATTAAT | 1 cut(s) | 603 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 147 |
| AspA2I | CCTAGG | 1 cut(s) | 1652 |
| AspLEI | GCGC | 2 cut(s) | 158, 469 |
| AspS9I | GGNCC | 5 cut(s) | 68, 505, 506, 1245, 1571 |
| AsuHPI | GGTGA | 2 cut(s) | 1004, 1030 |
| AvaII | GGWCC | 1 cut(s) | 1571 |
| AvrII | CCTAGG | 1 cut(s) | 1652 |
| AxyI | CCTNAGG | 1 cut(s) | 903 |
| BaeGI | GKGCMC | 1 cut(s) | 509 |
| BalI | TGGCCA | 1 cut(s) | 1526 |
| BamHI | GGATCC | 1 cut(s) | 1156 |
| BanI | GGYRCC | 1 cut(s) | 1481 |
| BanII | GRGCYC | 1 cut(s) | 509 |
| BauI | CACGAG | 2 cut(s) | 477, 1512 |
| Bbv12I | GWGCWC | 3 cut(s) | 47, 1475, 1639 |
| BbvCI | CCTCAGC | 1 cut(s) | 123 |
| BbvI | GCAGC | 4 cut(s) | 140, 1160, 1216, 1244 |
| BccI | CCATC | 3 cut(s) | 335, 837, 1208 |
| BciVI | GTATCC | 1 cut(s) | 1500 |
| BcoDI | GTCTC | 1 cut(s) | 1653 |
| BfaI | CTAG | 3 cut(s) | 102, 387, 1653 |
| BfmI | CTRYAG | 3 cut(s) | 1146, 1230, 1476 |
| BfoI | RGCGCY | 1 cut(s) | 470 |
| BfrI | CTTAAG | 1 cut(s) | 491 |
| BfuI | GTATCC | 1 cut(s) | 1500 |
| BisI | GCNGC | 4 cut(s) | 129, 1149, 1230, 1233 |
| BlnI | CCTAGG | 1 cut(s) | 1652 |
| BlpI | GCTNAGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 4 cut(s) | 130, 1150, 1231, 1234 |
| BmcAI | AGTACT | 1 cut(s) | 1567 |
| Bme18I | GGWCC | 1 cut(s) | 1571 |
| BmgT120I | GGNCC | 5 cut(s) | 68, 505, 506, 1245, 1571 |
| BmiI | GGNNCC | 5 cut(s) | 108, 507, 1158, 1246, 1483 |
| BmsI | GCATC | 4 cut(s) | 109, 670, 994, 1055 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 1633 |
| BpmI | CTGGAG | 1 cut(s) | 866 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 1 cut(s) | 578 |
| BsaI | GGTCTC | 1 cut(s) | 1653 |
| BsaJI | CCNNGG | 5 cut(s) | 245, 1160, 1436, 1574, 1652 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 839, 869 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 392, 1048 |
| Bse1I | ACTGG | 2 cut(s) | 1532, 1573 |
| Bse21I | CCTNAGG | 1 cut(s) | 903 |
| Bse3DI | GCAATG | 1 cut(s) | 171 |
| BseDI | CCNNGG | 5 cut(s) | 245, 1160, 1436, 1574, 1652 |
| BseGI | GGATG | 2 cut(s) | 75, 1219 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 392, 1048 |
| BseMI | GCAATG | 1 cut(s) | 171 |
| BseMII | CTCAG | 5 cut(s) | 114, 123, 156, 698, 894 |
| BseNI | ACTGG | 2 cut(s) | 1532, 1573 |
| BseRI | GAGGAG | 1 cut(s) | 575 |
| BseSI | GKGCMC | 1 cut(s) | 509 |
| BseXI | GCAGC | 4 cut(s) | 140, 1160, 1216, 1244 |
| BsgI | GTGCAG | 1 cut(s) | 752 |
| Bsh1236I | CGCG | 1 cut(s) | 247 |
| BshFI | GGCC | 5 cut(s) | 70, 507, 1247, 1526, 1579 |
| BshNI | GGYRCC | 1 cut(s) | 1481 |
| BsiHKAI | GWGCWC | 3 cut(s) | 47, 1475, 1639 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 392, 1048 |
| BsmAI | GTCTC | 1 cut(s) | 1653 |
| BsmI | GAATGC | 1 cut(s) | 1559 |
| BsnI | GGCC | 5 cut(s) | 70, 507, 1247, 1526, 1579 |
| Bso31I | GGTCTC | 1 cut(s) | 1653 |
| Bsp120I | GGGCCC | 1 cut(s) | 505 |
| Bsp1286I | GDGCHC | 4 cut(s) | 47, 509, 1475, 1639 |
| Bsp1407I | TGTACA | 1 cut(s) | 1301 |
| Bsp143I | GATC | 4 cut(s) | 178, 622, 936, 1156 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 132 |
| BspACI | CCGC | 5 cut(s) | 245, 247, 311, 860, 1211 |
| BspANI | GGCC | 5 cut(s) | 70, 507, 1247, 1526, 1579 |
| BspCNI | CTCAG | 5 cut(s) | 115, 124, 157, 697, 895 |
| BspFNI | CGCG | 1 cut(s) | 247 |
| BspHI | TCATGA | 1 cut(s) | 1027 |
| BspLI | GGNNCC | 5 cut(s) | 108, 507, 1158, 1246, 1483 |
| BspMAI | CTGCAG | 3 cut(s) | 1150, 1234, 1480 |
| BspPI | GGATC | 3 cut(s) | 173, 1151, 1164 |
| BspT107I | GGYRCC | 1 cut(s) | 1481 |
| BspTI | CTTAAG | 1 cut(s) | 491 |
| BspTNI | GGTCTC | 1 cut(s) | 1653 |
| BsrDI | GCAATG | 1 cut(s) | 171 |
| BsrGI | TGTACA | 1 cut(s) | 1301 |
| BsrI | ACTGG | 2 cut(s) | 1532, 1573 |
| BssECI | CCNNGG | 5 cut(s) | 245, 1160, 1436, 1574, 1652 |
| BssMI | GATC | 4 cut(s) | 178, 622, 936, 1156 |
| BssSI | CACGAG | 2 cut(s) | 477, 1512 |
| BssT1I | CCWWGG | 3 cut(s) | 1436, 1574, 1652 |
| Bst2BI | CACGAG | 2 cut(s) | 477, 1512 |
| Bst4CI | ACNGT | 3 cut(s) | 517, 1078, 1301 |
| Bst6I | CTCTTC | 1 cut(s) | 877 |
| BstAFI | CTTAAG | 1 cut(s) | 491 |
| BstAUI | TGTACA | 1 cut(s) | 1301 |
| BstC8I | GCNNGC | 4 cut(s) | 1480, 1542, 1581, 1623 |
| BstDEI | CTNAG | 6 cut(s) | 123, 132, 165, 684, 903, 1499 |
| BstDSI | CCRYGG | 1 cut(s) | 245 |
| BstF5I | GGATG | 2 cut(s) | 75, 1219 |
| BstFNI | CGCG | 1 cut(s) | 247 |
| BstH2I | RGCGCY | 1 cut(s) | 470 |
| BstHHI | GCGC | 2 cut(s) | 158, 469 |
| BstKTI | GATC | 4 cut(s) | 181, 625, 939, 1159 |
| BstMAI | GTCTC | 1 cut(s) | 1653 |
| BstMBI | GATC | 4 cut(s) | 178, 622, 936, 1156 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 128, 244, 253, 1479 |
| BstNSI | RCATGY | 2 cut(s) | 1358, 1625 |
| BstSFI | CTRYAG | 3 cut(s) | 1146, 1230, 1476 |
| BstSLI | GKGCMC | 1 cut(s) | 509 |
| BstUI | CGCG | 1 cut(s) | 247 |
| BstV1I | GCAGC | 4 cut(s) | 140, 1160, 1216, 1244 |
| BstX2I | RGATCY | 1 cut(s) | 1156 |
| BstYI | RGATCY | 1 cut(s) | 1156 |
| Bsu36I | CCTNAGG | 1 cut(s) | 903 |
| BsuI | GTATCC | 1 cut(s) | 1500 |
| BsuRI | GGCC | 5 cut(s) | 70, 507, 1247, 1526, 1579 |
| BtgI | CCRYGG | 1 cut(s) | 245 |
| BtsCI | GGATG | 2 cut(s) | 75, 1219 |
| BtsI | GCAGTG | 2 cut(s) | 1473, 1616 |
| BtsIMutI | CAGTG | 3 cut(s) | 882, 1473, 1616 |
| Cac8I | GCNNGC | 4 cut(s) | 1480, 1542, 1581, 1623 |
| CciI | TCATGA | 1 cut(s) | 1027 |
| CfoI | GCGC | 2 cut(s) | 158, 469 |
| Cfr13I | GGNCC | 5 cut(s) | 68, 505, 506, 1245, 1571 |
| Cfr42I | CCGCGG | 1 cut(s) | 248 |
| Csp6I | GTAC | 3 cut(s) | 169, 1302, 1566 |
| CviAII | CATG | 7 cut(s) | 9, 377, 1019, 1028, 1355, 1603, 1622 |
| CviQI | GTAC | 3 cut(s) | 169, 1302, 1566 |
| DdeI | CTNAG | 6 cut(s) | 123, 132, 165, 684, 903, 1499 |
| DpnI | GATC | 4 cut(s) | 180, 624, 938, 1158 |
| DpnII | GATC | 4 cut(s) | 178, 622, 936, 1156 |
| DraI | TTTAAA | 1 cut(s) | 1168 |
| DraIII | CACNNNGTG | 1 cut(s) | 1280 |
| EaeI | YGGCCR | 1 cut(s) | 1524 |
| Eam1104I | CTCTTC | 1 cut(s) | 877 |
| EarI | CTCTTC | 1 cut(s) | 877 |
| EciI | GGCGGA | 1 cut(s) | 1226 |
| Eco130I | CCWWGG | 3 cut(s) | 1436, 1574, 1652 |
| Eco24I | GRGCYC | 1 cut(s) | 509 |
| Eco31I | GGTCTC | 1 cut(s) | 1653 |
| Eco32I | GATATC | 1 cut(s) | 585 |
| Eco47I | GGWCC | 1 cut(s) | 1571 |
| Eco57I | CTGAAG | 2 cut(s) | 858, 1356 |
| Eco81I | CCTNAGG | 1 cut(s) | 903 |
| EcoRI | GAATTC | 3 cut(s) | 55, 281, 323 |
| EcoRV | GATATC | 1 cut(s) | 585 |
| EcoT14I | CCWWGG | 3 cut(s) | 1436, 1574, 1652 |
| EcoT38I | GRGCYC | 1 cut(s) | 509 |
| ErhI | CCWWGG | 3 cut(s) | 1436, 1574, 1652 |
| FaeI | CATG | 7 cut(s) | 12, 380, 1022, 1031, 1358, 1606, 1625 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 311, 343 |
| FatI | CATG | 7 cut(s) | 8, 376, 1018, 1027, 1354, 1602, 1621 |
| FauI | CCCGC | 3 cut(s) | 252, 304, 853 |
| FblI | GTMKAC | 2 cut(s) | 512, 942 |
| Fnu4HI | GCNGC | 4 cut(s) | 129, 1149, 1230, 1233 |
| FokI | GGATG | 2 cut(s) | 62, 1226 |
| FriOI | GRGCYC | 1 cut(s) | 509 |
| Fsp4HI | GCNGC | 4 cut(s) | 129, 1149, 1230, 1233 |
| FspBI | CTAG | 3 cut(s) | 102, 387, 1653 |
| GlaI | GCGC | 2 cut(s) | 157, 468 |
| GluI | GCNGC | 4 cut(s) | 129, 1149, 1230, 1233 |
| GsuI | CTGGAG | 1 cut(s) | 866 |
| HaeII | RGCGCY | 1 cut(s) | 470 |
| HaeIII | GGCC | 5 cut(s) | 70, 507, 1247, 1526, 1579 |
| HhaI | GCGC | 2 cut(s) | 158, 469 |
| Hin1II | CATG | 7 cut(s) | 12, 380, 1022, 1031, 1358, 1606, 1625 |
| Hin6I | GCGC | 2 cut(s) | 156, 467 |
| HinP1I | GCGC | 2 cut(s) | 156, 467 |
| HincII | GTYRAC | 2 cut(s) | 880, 1054 |
| HindII | GTYRAC | 2 cut(s) | 880, 1054 |
| HindIII | AAGCTT | 1 cut(s) | 1098 |
| HinfI | GANTC | 7 cut(s) | 5, 646, 669, 1055, 1310, 1331, 1360 |
| HphI | GGTGA | 2 cut(s) | 1004, 1030 |
| Hpy166II | GTNNAC | 7 cut(s) | 513, 880, 943, 1054, 1297, 1398, 1600 |
| Hpy188I | TCNGA | 8 cut(s) | 94, 153, 990, 1060, 1288, 1330, 1336, 1641 |
| Hpy188III | TCNNGA | 9 cut(s) | 52, 182, 203, 656, 845, 1028, 1154, 1418, 1514 |
| Hpy8I | GTNNAC | 7 cut(s) | 513, 880, 943, 1054, 1297, 1398, 1600 |
| Hpy99I | CGWCG | 1 cut(s) | 1184 |
| HpyAV | CCTTC | 6 cut(s) | 72, 200, 209, 658, 917, 1331 |
| HpyCH4III | ACNGT | 3 cut(s) | 517, 1078, 1301 |
| HpyCH4IV | ACGT | 1 cut(s) | 1179 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 128, 244, 253, 1479 |
| HpyF3I | CTNAG | 6 cut(s) | 123, 132, 165, 684, 903, 1499 |
| HpySE526I | ACGT | 1 cut(s) | 1179 |
| Hsp92II | CATG | 7 cut(s) | 12, 380, 1022, 1031, 1358, 1606, 1625 |
| HspAI | GCGC | 2 cut(s) | 156, 467 |
| KspI | CCGCGG | 1 cut(s) | 248 |
| Kzo9I | GATC | 4 cut(s) | 178, 622, 936, 1156 |
| LmnI | GCTCC | 2 cut(s) | 1470, 1641 |
| Lsp1109I | GCAGC | 4 cut(s) | 140, 1160, 1216, 1244 |
| LweI | GCATC | 4 cut(s) | 109, 670, 994, 1055 |
| MaeI | CTAG | 3 cut(s) | 102, 387, 1653 |
| MaeII | ACGT | 1 cut(s) | 1179 |
| MaeIII | GTNAC | 2 cut(s) | 817, 1377 |
| MalI | GATC | 4 cut(s) | 180, 624, 938, 1158 |
| MboI | GATC | 4 cut(s) | 178, 622, 936, 1156 |
| MboII | GAAGA | 8 cut(s) | 234, 589, 592, 655, 864, 925, 1185, 1433 |
| MfeI | CAATTG | 2 cut(s) | 626, 1403 |
| MflI | RGATCY | 1 cut(s) | 1156 |
| MhlI | GDGCHC | 4 cut(s) | 47, 509, 1475, 1639 |
| MlsI | TGGCCA | 1 cut(s) | 1526 |
| MluNI | TGGCCA | 1 cut(s) | 1526 |
| MlyI | GAGTC | 1 cut(s) | 1049 |
| MmeI | TCCRAC | 2 cut(s) | 193, 697 |
| Mox20I | TGGCCA | 1 cut(s) | 1526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 147 |
| MscI | TGGCCA | 1 cut(s) | 1526 |
| MslI | CAYNNNNRTG | 3 cut(s) | 477, 728, 1017 |
| Msp20I | TGGCCA | 1 cut(s) | 1526 |
| MspA1I | CMGCKG | 5 cut(s) | 131, 247, 860, 1235, 1583 |
| MspCI | CTTAAG | 1 cut(s) | 491 |
| MunI | CAATTG | 2 cut(s) | 626, 1403 |
| Mva1269I | GAATGC | 1 cut(s) | 1559 |
| MvnI | CGCG | 1 cut(s) | 247 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 128, 244, 253, 1479 |
| NdeII | GATC | 4 cut(s) | 178, 622, 936, 1156 |
| NlaIII | CATG | 7 cut(s) | 12, 380, 1022, 1031, 1358, 1606, 1625 |
| NlaIV | GGNNCC | 5 cut(s) | 108, 507, 1158, 1246, 1483 |
| NmuCI | GTSAC | 1 cut(s) | 817 |
| NspI | RCATGY | 2 cut(s) | 1358, 1625 |
| OliI | CACNNNNGTG | 2 cut(s) | 477, 728 |
| PaeI | GCATGC | 1 cut(s) | 1625 |
| PagI | TCATGA | 1 cut(s) | 1027 |
| PciI | ACATGT | 1 cut(s) | 1354 |
| PctI | GAATGC | 1 cut(s) | 1559 |
| PdmI | GAANNNNTTC | 1 cut(s) | 147 |
| PfeI | GAWTC | 5 cut(s) | 646, 669, 1310, 1331, 1360 |
| PkrI | GCNGC | 4 cut(s) | 130, 1150, 1231, 1234 |
| PleI | GAGTC | 1 cut(s) | 1049 |
| PpsI | GAGTC | 1 cut(s) | 1049 |
| PscI | ACATGT | 1 cut(s) | 1354 |
| PshBI | ATTAAT | 1 cut(s) | 603 |
| PspN4I | GGNNCC | 5 cut(s) | 108, 507, 1158, 1246, 1483 |
| PspOMI | GGGCCC | 1 cut(s) | 505 |
| PspPI | GGNCC | 5 cut(s) | 68, 505, 506, 1245, 1571 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1416, 1448 |
| PstI | CTGCAG | 3 cut(s) | 1150, 1234, 1480 |
| PsuI | RGATCY | 1 cut(s) | 1156 |
| PvuII | CAGCTG | 3 cut(s) | 131, 1235, 1583 |
| RsaI | GTAC | 3 cut(s) | 170, 1303, 1567 |
| RsaNI | GTAC | 3 cut(s) | 169, 1302, 1566 |
| RseI | CAYNNNNRTG | 3 cut(s) | 477, 728, 1017 |
| SacII | CCGCGG | 1 cut(s) | 248 |
| SatI | GCNGC | 4 cut(s) | 129, 1149, 1230, 1233 |
| Sau3AI | GATC | 4 cut(s) | 178, 622, 936, 1156 |
| Sau96I | GGNCC | 5 cut(s) | 68, 505, 506, 1245, 1571 |
| ScaI | AGTACT | 1 cut(s) | 1567 |
| SchI | GAGTC | 1 cut(s) | 1049 |
| SduI | GDGCHC | 4 cut(s) | 47, 509, 1475, 1639 |
| SfaNI | GCATC | 4 cut(s) | 109, 670, 994, 1055 |
| SfcI | CTRYAG | 3 cut(s) | 1146, 1230, 1476 |
| Sfr303I | CCGCGG | 1 cut(s) | 248 |
| SgrBI | CCGCGG | 1 cut(s) | 248 |
| SinI | GGWCC | 1 cut(s) | 1571 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 477, 728, 1017 |
| SmlI | CTYRAG | 2 cut(s) | 491, 557 |
| SmoI | CTYRAG | 2 cut(s) | 491, 557 |
| SphI | GCATGC | 1 cut(s) | 1625 |
| SsiI | CCGC | 5 cut(s) | 245, 247, 311, 860, 1211 |
| SspMI | CTAG | 3 cut(s) | 102, 387, 1653 |
| StyI | CCWWGG | 3 cut(s) | 1436, 1574, 1652 |
| TaaI | ACNGT | 3 cut(s) | 517, 1078, 1301 |
| TaiI | ACGT | 1 cut(s) | 1182 |
| TaqI | TCGA | 1 cut(s) | 1182 |
| TatI | WGTACW | 3 cut(s) | 168, 1301, 1565 |
| TfiI | GAWTC | 5 cut(s) | 646, 669, 1310, 1331, 1360 |
| TscAI | CASTG | 3 cut(s) | 889, 1480, 1623 |
| TseFI | GTSAC | 1 cut(s) | 817 |
| TseI | GCWGC | 4 cut(s) | 128, 1148, 1229, 1232 |
| Tsp45I | GTSAC | 1 cut(s) | 817 |
| TspDTI | ATGAA | 8 cut(s) | 27, 393, 969, 1016, 1044, 1187, 1281, 1619 |
| TspGWI | ACGGA | 1 cut(s) | 1268 |
| TspRI | CASTG | 3 cut(s) | 889, 1480, 1623 |
| Vha464I | CTTAAG | 1 cut(s) | 491 |
| VpaK11BI | GGWCC | 1 cut(s) | 1571 |
| VspI | ATTAAT | 1 cut(s) | 603 |
| XapI | RAATTY | 8 cut(s) | 33, 55, 281, 323, 335, 823, 1032, 1184 |
| XceI | RCATGY | 2 cut(s) | 1358, 1625 |
| XmaJI | CCTAGG | 1 cut(s) | 1652 |
| XmiI | GTMKAC | 2 cut(s) | 512, 942 |
| XmnI | GAANNNNTTC | 1 cut(s) | 147 |
| XspI | CTAG | 3 cut(s) | 102, 387, 1653 |
| ZrmI | AGTACT | 1 cut(s) | 1567 |