Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 379 - 437 | 6.9e-14 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 908 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 665 |
| AciI | CCGC | 1 cut(s) | 1358 |
| AclWI | GGATC | 2 cut(s) | 171, 1288 |
| AcsI | RAATTY | 9 cut(s) | 311, 531, 827, 862, 1097, 1159, 1445, 1493, 1612 |
| AcuI | CTGAAG | 2 cut(s) | 485, 1440 |
| AfaI | GTAC | 4 cut(s) | 389, 915, 932, 981 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 665 |
| AflII | CTTAAG | 1 cut(s) | 431 |
| AflIII | ACRYGT | 2 cut(s) | 230, 299 |
| AhlI | ACTAGT | 1 cut(s) | 1031 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1182, 1214 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1132, 1164 |
| AluBI | AGCT | 7 cut(s) | 44, 200, 404, 475, 680, 1290, 1659 |
| AluI | AGCT | 7 cut(s) | 44, 200, 404, 475, 680, 1290, 1659 |
| Alw21I | GWGCWC | 1 cut(s) | 853 |
| Alw26I | GTCTC | 4 cut(s) | 5, 1009, 1207, 1228 |
| AlwI | GGATC | 2 cut(s) | 171, 1288 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 508 |
| AoxI | GGCC | 1 cut(s) | 348 |
| ApoI | RAATTY | 9 cut(s) | 311, 531, 827, 862, 1097, 1159, 1445, 1493, 1612 |
| AseI | ATTAAT | 1 cut(s) | 18 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1319, 1572 |
| AsuHPI | GGTGA | 2 cut(s) | 276, 1436 |
| BaeGI | GKGCMC | 1 cut(s) | 1029 |
| BbsI | GAAGAC | 3 cut(s) | 82, 285, 1434 |
| Bbv12I | GWGCWC | 1 cut(s) | 853 |
| BccI | CCATC | 6 cut(s) | 566, 872, 1066, 1217, 1602, 1646 |
| BciVI | GTATCC | 3 cut(s) | 624, 1158, 1590 |
| BclI | TGATCA | 1 cut(s) | 895 |
| BcoDI | GTCTC | 4 cut(s) | 5, 1009, 1207, 1228 |
| BcuI | ACTAGT | 1 cut(s) | 1031 |
| BfaI | CTAG | 3 cut(s) | 87, 677, 1032 |
| BfrI | CTTAAG | 1 cut(s) | 431 |
| BfuI | GTATCC | 3 cut(s) | 624, 1158, 1590 |
| BmiI | GGNNCC | 1 cut(s) | 1141 |
| BmsI | GCATC | 3 cut(s) | 761, 933, 1441 |
| BpiI | GAAGAC | 3 cut(s) | 82, 285, 1434 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1396, 1428 |
| BpuEI | CTTGAG | 2 cut(s) | 546, 1033 |
| BsaAI | YACGTR | 1 cut(s) | 917 |
| BsaBI | GATNNNNATC | 1 cut(s) | 886 |
| BsaJI | CCNNGG | 2 cut(s) | 1173, 1297 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 30, 60, 520, 550, 1352, 1382 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 665 |
| Bse1I | ACTGG | 1 cut(s) | 98 |
| Bse8I | GATNNNNATC | 1 cut(s) | 886 |
| BseDI | CCNNGG | 2 cut(s) | 1173, 1297 |
| BseGI | GGATG | 1 cut(s) | 1549 |
| BseJI | GATNNNNATC | 1 cut(s) | 886 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 665 |
| BseMII | CTCAG | 2 cut(s) | 150, 302 |
| BseNI | ACTGG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 51 |
| BseSI | GKGCMC | 1 cut(s) | 1029 |
| BsgI | GTGCAG | 1 cut(s) | 198 |
| BshFI | GGCC | 1 cut(s) | 350 |
| BsiHKAI | GWGCWC | 1 cut(s) | 853 |
| BslFI | GGGAC | 1 cut(s) | 1088 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 665 |
| BsmAI | GTCTC | 4 cut(s) | 5, 1009, 1207, 1228 |
| BsmBI | CGTCTC | 1 cut(s) | 1228 |
| BsmFI | GGGAC | 1 cut(s) | 1088 |
| BsmI | GAATGC | 2 cut(s) | 188, 1197 |
| BsnI | GGCC | 1 cut(s) | 350 |
| Bsp1286I | GDGCHC | 2 cut(s) | 853, 1029 |
| Bsp1407I | TGTACA | 1 cut(s) | 979 |
| Bsp143I | GATC | 4 cut(s) | 163, 687, 895, 1293 |
| BspACI | CCGC | 1 cut(s) | 1358 |
| BspANI | GGCC | 1 cut(s) | 350 |
| BspCNI | CTCAG | 2 cut(s) | 151, 301 |
| BspHI | TCATGA | 3 cut(s) | 250, 1230, 1395 |
| BspLI | GGNNCC | 1 cut(s) | 1141 |
| BspPI | GGATC | 2 cut(s) | 171, 1288 |
| BspTI | CTTAAG | 1 cut(s) | 431 |
| BsrGI | TGTACA | 1 cut(s) | 979 |
| BsrI | ACTGG | 1 cut(s) | 98 |
| BssECI | CCNNGG | 2 cut(s) | 1173, 1297 |
| BssMI | GATC | 4 cut(s) | 163, 687, 895, 1293 |
| BssT1I | CCWWGG | 2 cut(s) | 1173, 1297 |
| Bst4CI | ACNGT | 1 cut(s) | 454 |
| Bst6I | CTCTTC | 1 cut(s) | 1000 |
| BstAFI | CTTAAG | 1 cut(s) | 431 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 367 |
| BstAUI | TGTACA | 1 cut(s) | 979 |
| BstBAI | YACGTR | 1 cut(s) | 917 |
| BstC8I | GCNNGC | 2 cut(s) | 177, 1661 |
| BstDEI | CTNAG | 3 cut(s) | 159, 288, 635 |
| BstF5I | GGATG | 1 cut(s) | 1549 |
| BstKTI | GATC | 4 cut(s) | 166, 690, 898, 1296 |
| BstMAI | GTCTC | 4 cut(s) | 5, 1009, 1207, 1228 |
| BstMBI | GATC | 4 cut(s) | 163, 687, 895, 1293 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 367 |
| BstNSI | RCATGY | 1 cut(s) | 234 |
| BstSLI | GKGCMC | 1 cut(s) | 1029 |
| BstV2I | GAAGAC | 3 cut(s) | 82, 285, 1434 |
| BsuI | GTATCC | 3 cut(s) | 624, 1158, 1590 |
| BsuRI | GGCC | 1 cut(s) | 350 |
| BtsCI | GGATG | 1 cut(s) | 1549 |
| BtsIMutI | CAGTG | 1 cut(s) | 1323 |
| Cac8I | GCNNGC | 2 cut(s) | 177, 1661 |
| CaiI | CAGNNNCTG | 1 cut(s) | 508 |
| CciI | TCATGA | 3 cut(s) | 250, 1230, 1395 |
| Csp6I | GTAC | 4 cut(s) | 388, 914, 931, 980 |
| CviQI | GTAC | 4 cut(s) | 388, 914, 931, 980 |
| DdeI | CTNAG | 3 cut(s) | 159, 288, 635 |
| DpnI | GATC | 4 cut(s) | 165, 689, 897, 1295 |
| DpnII | GATC | 4 cut(s) | 163, 687, 895, 1293 |
| DraI | TTTAAA | 1 cut(s) | 142 |
| Eam1104I | CTCTTC | 1 cut(s) | 1000 |
| EarI | CTCTTC | 1 cut(s) | 1000 |
| Eco130I | CCWWGG | 2 cut(s) | 1173, 1297 |
| Eco32I | GATATC | 1 cut(s) | 135 |
| Eco57I | CTGAAG | 2 cut(s) | 485, 1440 |
| EcoRV | GATATC | 1 cut(s) | 135 |
| EcoT14I | CCWWGG | 2 cut(s) | 1173, 1297 |
| EcoT22I | ATGCAT | 2 cut(s) | 188, 754 |
| ErhI | CCWWGG | 2 cut(s) | 1173, 1297 |
| Esp3I | CGTCTC | 1 cut(s) | 1228 |
| FaqI | GGGAC | 1 cut(s) | 1088 |
| FauNDI | CATATG | 1 cut(s) | 648 |
| FbaI | TGATCA | 1 cut(s) | 895 |
| FokI | GGATG | 1 cut(s) | 1556 |
| FspBI | CTAG | 3 cut(s) | 87, 677, 1032 |
| HaeIII | GGCC | 1 cut(s) | 350 |
| HinfI | GANTC | 5 cut(s) | 215, 396, 505, 605, 764 |
| HphI | GGTGA | 2 cut(s) | 276, 1436 |
| Hpy166II | GTNNAC | 1 cut(s) | 59 |
| Hpy188I | TCNGA | 6 cut(s) | 334, 401, 504, 547, 610, 1282 |
| Hpy188III | TCNNGA | 9 cut(s) | 251, 859, 875, 1064, 1137, 1231, 1376, 1396, 1598 |
| Hpy8I | GTNNAC | 1 cut(s) | 59 |
| HpyAV | CCTTC | 2 cut(s) | 435, 1415 |
| HpyCH4III | ACNGT | 1 cut(s) | 454 |
| HpyCH4IV | ACGT | 3 cut(s) | 244, 301, 916 |
| HpyCH4V | TGCA | 6 cut(s) | 179, 186, 622, 752, 924, 1307 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 367 |
| HpyF3I | CTNAG | 3 cut(s) | 159, 288, 635 |
| HpySE526I | ACGT | 3 cut(s) | 244, 301, 916 |
| Ksp22I | TGATCA | 1 cut(s) | 895 |
| Kzo9I | GATC | 4 cut(s) | 163, 687, 895, 1293 |
| LmnI | GCTCC | 1 cut(s) | 197 |
| LpnPI | CCDG | 4 cut(s) | 111, 165, 1077, 1122 |
| LweI | GCATC | 3 cut(s) | 761, 933, 1441 |
| MaeI | CTAG | 3 cut(s) | 87, 677, 1032 |
| MaeII | ACGT | 3 cut(s) | 244, 301, 916 |
| MaeIII | GTNAC | 4 cut(s) | 154, 282, 1034, 1120 |
| MalI | GATC | 4 cut(s) | 165, 689, 897, 1295 |
| MboI | GATC | 4 cut(s) | 163, 687, 895, 1293 |
| MboII | GAAGA | 9 cut(s) | 41, 87, 285, 297, 1017, 1099, 1439, 1498, 1526 |
| MfeI | CAATTG | 2 cut(s) | 791, 891 |
| MhlI | GDGCHC | 2 cut(s) | 853, 1029 |
| MmeI | TCCRAC | 5 cut(s) | 110, 1213, 1260, 1503, 1521 |
| Mph1103I | ATGCAT | 2 cut(s) | 188, 754 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1319, 1572 |
| MslI | CAYNNNNRTG | 3 cut(s) | 700, 1221, 1629 |
| MspCI | CTTAAG | 1 cut(s) | 431 |
| MunI | CAATTG | 2 cut(s) | 791, 891 |
| Mva1269I | GAATGC | 2 cut(s) | 188, 1197 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 367 |
| NdeI | CATATG | 1 cut(s) | 648 |
| NdeII | GATC | 4 cut(s) | 163, 687, 895, 1293 |
| NlaIV | GGNNCC | 1 cut(s) | 1141 |
| NmuCI | GTSAC | 4 cut(s) | 154, 282, 1034, 1120 |
| NsiI | ATGCAT | 2 cut(s) | 188, 754 |
| NspI | RCATGY | 1 cut(s) | 234 |
| PagI | TCATGA | 3 cut(s) | 250, 1230, 1395 |
| PciI | ACATGT | 1 cut(s) | 230 |
| PctI | GAATGC | 2 cut(s) | 188, 1197 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1319, 1572 |
| PfeI | GAWTC | 5 cut(s) | 215, 396, 505, 605, 764 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 665 |
| Ppu21I | YACGTR | 1 cut(s) | 917 |
| PscI | ACATGT | 1 cut(s) | 230 |
| PshBI | ATTAAT | 1 cut(s) | 18 |
| PsiI | TTATAA | 1 cut(s) | 908 |
| PspN4I | GGNNCC | 1 cut(s) | 1141 |
| PstNI | CAGNNNCTG | 1 cut(s) | 508 |
| RsaI | GTAC | 4 cut(s) | 389, 915, 932, 981 |
| RsaNI | GTAC | 4 cut(s) | 388, 914, 931, 980 |
| RseI | CAYNNNNRTG | 3 cut(s) | 700, 1221, 1629 |
| Sau3AI | GATC | 4 cut(s) | 163, 687, 895, 1293 |
| SduI | GDGCHC | 2 cut(s) | 853, 1029 |
| SfaNI | GCATC | 3 cut(s) | 761, 933, 1441 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 700, 1221, 1629 |
| SmlI | CTYRAG | 3 cut(s) | 431, 561, 1012 |
| SmoI | CTYRAG | 3 cut(s) | 431, 561, 1012 |
| SpeI | ACTAGT | 1 cut(s) | 1031 |
| SsiI | CCGC | 1 cut(s) | 1358 |
| SspI | AATATT | 1 cut(s) | 1274 |
| SspMI | CTAG | 3 cut(s) | 87, 677, 1032 |
| StyI | CCWWGG | 2 cut(s) | 1173, 1297 |
| TaaI | ACNGT | 1 cut(s) | 454 |
| TaiI | ACGT | 3 cut(s) | 247, 304, 919 |
| TaqI | TCGA | 6 cut(s) | 269, 345, 734, 841, 1377, 1478 |
| TatI | WGTACW | 2 cut(s) | 930, 979 |
| TfiI | GAWTC | 5 cut(s) | 215, 396, 505, 605, 764 |
| TscAI | CASTG | 1 cut(s) | 1330 |
| TseFI | GTSAC | 4 cut(s) | 154, 282, 1034, 1120 |
| Tsp45I | GTSAC | 4 cut(s) | 154, 282, 1034, 1120 |
| TspRI | CASTG | 1 cut(s) | 1330 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 665 |
| Vha464I | CTTAAG | 1 cut(s) | 431 |
| VspI | ATTAAT | 1 cut(s) | 18 |
| XapI | RAATTY | 9 cut(s) | 311, 531, 827, 862, 1097, 1159, 1445, 1493, 1612 |
| XceI | RCATGY | 1 cut(s) | 234 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1319, 1572 |
| XspI | CTAG | 3 cut(s) | 87, 677, 1032 |
| Zsp2I | ATGCAT | 2 cut(s) | 188, 754 |