Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 236 - 320 | 7.9e-12 | hAT-like transposase, RNase-H fold |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 911 |
| AcsI | RAATTY | 4 cut(s) | 223, 457, 491, 851 |
| AfaI | GTAC | 1 cut(s) | 727 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 596 |
| AluBI | AGCT | 5 cut(s) | 74, 332, 383, 503, 813 |
| AluI | AGCT | 5 cut(s) | 74, 332, 383, 503, 813 |
| Alw21I | GWGCWC | 1 cut(s) | 274 |
| AlwI | GGATC | 1 cut(s) | 911 |
| AoxI | GGCC | 1 cut(s) | 614 |
| ApeKI | GCWGC | 1 cut(s) | 644 |
| ApoI | RAATTY | 4 cut(s) | 223, 457, 491, 851 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 671 |
| AspS9I | GGNCC | 1 cut(s) | 614 |
| AsuHPI | GGTGA | 3 cut(s) | 563, 596, 881 |
| BbsI | GAAGAC | 2 cut(s) | 206, 354 |
| Bbv12I | GWGCWC | 1 cut(s) | 274 |
| BbvI | GCAGC | 1 cut(s) | 631 |
| BccI | CCATC | 3 cut(s) | 158, 293, 332 |
| BceAI | ACGGC | 1 cut(s) | 27 |
| BfaI | CTAG | 2 cut(s) | 122, 450 |
| BisI | GCNGC | 1 cut(s) | 645 |
| BlsI | GCNGC | 1 cut(s) | 646 |
| BmcAI | AGTACT | 1 cut(s) | 727 |
| BmgT120I | GGNCC | 1 cut(s) | 614 |
| BmrI | ACTGGG | 1 cut(s) | 941 |
| BmsI | GCATC | 1 cut(s) | 718 |
| BmuI | ACTGGG | 1 cut(s) | 941 |
| BpiI | GAAGAC | 2 cut(s) | 206, 354 |
| BpuEI | CTTGAG | 2 cut(s) | 128, 224 |
| BsaJI | CCNNGG | 1 cut(s) | 984 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 349, 379 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 596 |
| Bse1I | ACTGG | 1 cut(s) | 936 |
| BseDI | CCNNGG | 1 cut(s) | 984 |
| BseGI | GGATG | 2 cut(s) | 709, 1003 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 596 |
| BseNI | ACTGG | 1 cut(s) | 936 |
| BseXI | GCAGC | 1 cut(s) | 631 |
| Bsh1285I | CGRYCG | 1 cut(s) | 159 |
| BshFI | GGCC | 1 cut(s) | 616 |
| BsiEI | CGRYCG | 1 cut(s) | 159 |
| BsiHKAI | GWGCWC | 1 cut(s) | 274 |
| BsiSI | CCGG | 2 cut(s) | 563, 713 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 596 |
| BsmI | GAATGC | 3 cut(s) | 346, 422, 487 |
| BsnI | GGCC | 1 cut(s) | 616 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp143I | GATC | 2 cut(s) | 871, 916 |
| Bsp19I | CCATGG | 1 cut(s) | 984 |
| BspANI | GGCC | 1 cut(s) | 616 |
| BspPI | GGATC | 1 cut(s) | 911 |
| BsrI | ACTGG | 1 cut(s) | 936 |
| BssECI | CCNNGG | 1 cut(s) | 984 |
| BssMI | GATC | 2 cut(s) | 871, 916 |
| BssT1I | CCWWGG | 1 cut(s) | 984 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| Bst6I | CTCTTC | 1 cut(s) | 750 |
| BstC8I | GCNNGC | 1 cut(s) | 744 |
| BstDEI | CTNAG | 1 cut(s) | 328 |
| BstDSI | CCRYGG | 1 cut(s) | 984 |
| BstF5I | GGATG | 2 cut(s) | 709, 1003 |
| BstKTI | GATC | 2 cut(s) | 874, 919 |
| BstMBI | GATC | 2 cut(s) | 871, 916 |
| BstMCI | CGRYCG | 1 cut(s) | 159 |
| BstNSI | RCATGY | 2 cut(s) | 256, 260 |
| BstV1I | GCAGC | 1 cut(s) | 631 |
| BstV2I | GAAGAC | 2 cut(s) | 206, 354 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 453 |
| BsuRI | GGCC | 1 cut(s) | 616 |
| BtgI | CCRYGG | 1 cut(s) | 984 |
| BtsCI | GGATG | 2 cut(s) | 709, 1003 |
| Cac8I | GCNNGC | 1 cut(s) | 744 |
| Cfr13I | GGNCC | 1 cut(s) | 614 |
| CseI | GACGC | 1 cut(s) | 947 |
| Csp6I | GTAC | 1 cut(s) | 726 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 162, 197, 933, 968 |
| CviAII | CATG | 6 cut(s) | 253, 257, 543, 824, 841, 985 |
| CviQI | GTAC | 1 cut(s) | 726 |
| DdeI | CTNAG | 1 cut(s) | 328 |
| DpnI | GATC | 2 cut(s) | 873, 918 |
| DpnII | GATC | 2 cut(s) | 871, 916 |
| Eam1104I | CTCTTC | 1 cut(s) | 750 |
| EarI | CTCTTC | 1 cut(s) | 750 |
| Eco130I | CCWWGG | 1 cut(s) | 984 |
| EcoRI | GAATTC | 1 cut(s) | 457 |
| EcoT14I | CCWWGG | 1 cut(s) | 984 |
| EcoT22I | ATGCAT | 1 cut(s) | 258 |
| ErhI | CCWWGG | 1 cut(s) | 984 |
| FaeI | CATG | 6 cut(s) | 256, 260, 546, 827, 844, 988 |
| FatI | CATG | 6 cut(s) | 252, 256, 542, 823, 840, 984 |
| Fnu4HI | GCNGC | 1 cut(s) | 645 |
| FokI | GGATG | 2 cut(s) | 696, 1010 |
| Fsp4HI | GCNGC | 1 cut(s) | 645 |
| FspBI | CTAG | 2 cut(s) | 122, 450 |
| GluI | GCNGC | 1 cut(s) | 645 |
| HaeIII | GGCC | 1 cut(s) | 616 |
| HapII | CCGG | 2 cut(s) | 563, 713 |
| HgaI | GACGC | 1 cut(s) | 947 |
| Hin1II | CATG | 6 cut(s) | 256, 260, 546, 827, 844, 988 |
| HincII | GTYRAC | 2 cut(s) | 283, 477 |
| HindII | GTYRAC | 2 cut(s) | 283, 477 |
| HindIII | AAGCTT | 3 cut(s) | 381, 501, 811 |
| HinfI | GANTC | 2 cut(s) | 796, 886 |
| HpaI | GTTAAC | 2 cut(s) | 283, 477 |
| HpaII | CCGG | 2 cut(s) | 563, 713 |
| HphI | GGTGA | 3 cut(s) | 563, 596, 881 |
| Hpy166II | GTNNAC | 3 cut(s) | 283, 477, 587 |
| Hpy188I | TCNGA | 2 cut(s) | 736, 905 |
| Hpy188III | TCNNGA | 2 cut(s) | 107, 296 |
| Hpy8I | GTNNAC | 3 cut(s) | 283, 477, 587 |
| Hpy99I | CGWCG | 1 cut(s) | 963 |
| HpyAV | CCTTC | 3 cut(s) | 397, 600, 838 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4IV | ACGT | 2 cut(s) | 311, 359 |
| HpyCH4V | TGCA | 7 cut(s) | 43, 256, 420, 533, 709, 746, 823 |
| HpyF3I | CTNAG | 1 cut(s) | 328 |
| HpySE526I | ACGT | 2 cut(s) | 311, 359 |
| Hsp92II | CATG | 6 cut(s) | 256, 260, 546, 827, 844, 988 |
| KspAI | GTTAAC | 2 cut(s) | 283, 477 |
| Kzo9I | GATC | 2 cut(s) | 871, 916 |
| LpnPI | CCDG | 3 cut(s) | 576, 726, 917 |
| Lsp1109I | GCAGC | 1 cut(s) | 631 |
| LweI | GCATC | 1 cut(s) | 718 |
| MaeI | CTAG | 2 cut(s) | 122, 450 |
| MaeII | ACGT | 2 cut(s) | 311, 359 |
| MaeIII | GTNAC | 2 cut(s) | 355, 700 |
| MalI | GATC | 2 cut(s) | 873, 918 |
| MboI | GATC | 2 cut(s) | 871, 916 |
| MfeI | CAATTG | 1 cut(s) | 747 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MluCI | AATT | 9 cut(s) | 31, 223, 411, 457, 491, 658, 747, 818, 851 |
| MlyI | GAGTC | 1 cut(s) | 790 |
| MmeI | TCCRAC | 1 cut(s) | 883 |
| MnlI | CCTC | 3 cut(s) | 103, 300, 600 |
| Mph1103I | ATGCAT | 1 cut(s) | 258 |
| MroXI | GAANNNNTTC | 1 cut(s) | 671 |
| MseI | TTAA | 4 cut(s) | 282, 399, 476, 879 |
| MslI | CAYNNNNRTG | 1 cut(s) | 255 |
| MspI | CCGG | 2 cut(s) | 563, 713 |
| MunI | CAATTG | 1 cut(s) | 747 |
| Mva1269I | GAATGC | 3 cut(s) | 346, 422, 487 |
| NcoI | CCATGG | 1 cut(s) | 984 |
| NdeII | GATC | 2 cut(s) | 871, 916 |
| NlaIII | CATG | 6 cut(s) | 256, 260, 546, 827, 844, 988 |
| NsiI | ATGCAT | 1 cut(s) | 258 |
| NspI | RCATGY | 2 cut(s) | 256, 260 |
| PctI | GAATGC | 3 cut(s) | 346, 422, 487 |
| PdmI | GAANNNNTTC | 1 cut(s) | 671 |
| PfeI | GAWTC | 1 cut(s) | 886 |
| PkrI | GCNGC | 1 cut(s) | 646 |
| PleI | GAGTC | 1 cut(s) | 790 |
| PpsI | GAGTC | 1 cut(s) | 790 |
| PspPI | GGNCC | 1 cut(s) | 614 |
| RsaI | GTAC | 1 cut(s) | 727 |
| RsaNI | GTAC | 1 cut(s) | 726 |
| RseI | CAYNNNNRTG | 1 cut(s) | 255 |
| SaqAI | TTAA | 4 cut(s) | 282, 399, 476, 879 |
| SatI | GCNGC | 1 cut(s) | 645 |
| Sau3AI | GATC | 2 cut(s) | 871, 916 |
| Sau96I | GGNCC | 1 cut(s) | 614 |
| ScaI | AGTACT | 1 cut(s) | 727 |
| SchI | GAGTC | 1 cut(s) | 790 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SfaNI | GCATC | 1 cut(s) | 718 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 255 |
| SmlI | CTYRAG | 2 cut(s) | 107, 239 |
| SmoI | CTYRAG | 2 cut(s) | 107, 239 |
| Sse9I | AATT | 9 cut(s) | 31, 223, 411, 457, 491, 658, 747, 818, 851 |
| SspMI | CTAG | 2 cut(s) | 122, 450 |
| StyI | CCWWGG | 1 cut(s) | 984 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaiI | ACGT | 2 cut(s) | 314, 362 |
| TaqI | TCGA | 2 cut(s) | 159, 777 |
| TasI | AATT | 9 cut(s) | 31, 223, 411, 457, 491, 658, 747, 818, 851 |
| TatI | WGTACW | 1 cut(s) | 725 |
| TfiI | GAWTC | 1 cut(s) | 886 |
| Tru1I | TTAA | 4 cut(s) | 282, 399, 476, 879 |
| Tru9I | TTAA | 4 cut(s) | 282, 399, 476, 879 |
| TseI | GCWGC | 1 cut(s) | 644 |
| TspDTI | ATGAA | 6 cut(s) | 10, 763, 768, 840, 857, 993 |
| XapI | RAATTY | 4 cut(s) | 223, 457, 491, 851 |
| XceI | RCATGY | 2 cut(s) | 256, 260 |
| XmnI | GAANNNNTTC | 1 cut(s) | 671 |
| XspI | CTAG | 2 cut(s) | 122, 450 |
| ZrmI | AGTACT | 1 cut(s) | 727 |
| Zsp2I | ATGCAT | 1 cut(s) | 258 |