BED zinc finger
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dimer_Tnp_hAT | PF05699 | 324 - 375 | 1.2e-14 | hAT family C-terminal dimerisation region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1046 |
| AccI | GTMKAC | 1 cut(s) | 678 |
| AciI | CCGC | 5 cut(s) | 344, 596, 614, 844, 1159 |
| AcoI | YGGCCR | 1 cut(s) | 1089 |
| AcsI | RAATTY | 4 cut(s) | 136, 170, 224, 559 |
| AcuI | CTGAAG | 1 cut(s) | 594 |
| AcvI | CACGTG | 1 cut(s) | 1079 |
| AfaI | GTAC | 3 cut(s) | 605, 630, 868 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 250, 281, 487, 1139 |
| AflII | CTTAAG | 1 cut(s) | 380 |
| AflIII | ACRYGT | 1 cut(s) | 919 |
| AgsI | TTSAA | 4 cut(s) | 47, 659, 692, 973 |
| AleI | CACNNNNGTG | 1 cut(s) | 366 |
| AluBI | AGCT | 4 cut(s) | 379, 578, 760, 800 |
| AluI | AGCT | 4 cut(s) | 379, 578, 760, 800 |
| Alw21I | GWGCWC | 2 cut(s) | 373, 1040 |
| Alw26I | GTCTC | 1 cut(s) | 910 |
| AoxI | GGCC | 3 cut(s) | 810, 1089, 1141 |
| ApeKI | GCWGC | 1 cut(s) | 797 |
| ApoI | RAATTY | 4 cut(s) | 136, 170, 224, 559 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 608, 640, 671, 703, 809, 841 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| AspS9I | GGNCC | 2 cut(s) | 530, 810 |
| AsuHPI | GGTGA | 2 cut(s) | 740, 766 |
| AvaII | GGWCC | 1 cut(s) | 530 |
| AxyI | CCTNAGG | 1 cut(s) | 639 |
| BaeGI | GKGCMC | 1 cut(s) | 55 |
| BalI | TGGCCA | 1 cut(s) | 1091 |
| BanI | GGYRCC | 1 cut(s) | 1046 |
| BauI | CACGAG | 1 cut(s) | 540 |
| BbrPI | CACGTG | 1 cut(s) | 1079 |
| Bbv12I | GWGCWC | 2 cut(s) | 373, 1040 |
| BbvI | GCAGC | 1 cut(s) | 809 |
| BccI | CCATC | 3 cut(s) | 224, 406, 573 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 863, 897 |
| BciVI | GTATCC | 1 cut(s) | 1065 |
| BclI | TGATCA | 1 cut(s) | 511 |
| BcoDI | GTCTC | 1 cut(s) | 910 |
| BfaI | CTAG | 2 cut(s) | 6, 909 |
| BfmI | CTRYAG | 3 cut(s) | 184, 795, 1041 |
| BfrI | CTTAAG | 1 cut(s) | 380 |
| BfuI | GTATCC | 1 cut(s) | 1065 |
| BisI | GCNGC | 1 cut(s) | 798 |
| BlpI | GCTNAGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 1 cut(s) | 799 |
| BmcAI | AGTACT | 1 cut(s) | 605 |
| Bme18I | GGWCC | 1 cut(s) | 530 |
| BmgT120I | GGNCC | 2 cut(s) | 530, 810 |
| BmiI | GGNNCC | 2 cut(s) | 811, 1048 |
| BmsI | GCATC | 5 cut(s) | 13, 730, 791, 1009, 1133 |
| BpmI | CTGGAG | 1 cut(s) | 602 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 2 cut(s) | 395, 467 |
| BsaAI | YACGTR | 2 cut(s) | 80, 1079 |
| BsaJI | CCNNGG | 1 cut(s) | 1001 |
| BsaWI | WCCGGW | 1 cut(s) | 1132 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 575, 605 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 250, 281, 487, 1139 |
| Bse1I | ACTGG | 3 cut(s) | 992, 1097, 1144 |
| Bse21I | CCTNAGG | 1 cut(s) | 639 |
| BseDI | CCNNGG | 1 cut(s) | 1001 |
| BseGI | GGATG | 1 cut(s) | 398 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 250, 281, 487, 1139 |
| BseMII | CTCAG | 3 cut(s) | 18, 251, 630 |
| BseNI | ACTGG | 3 cut(s) | 992, 1097, 1144 |
| BseRI | GAGGAG | 1 cut(s) | 464 |
| BseSI | GKGCMC | 1 cut(s) | 55 |
| BseXI | GCAGC | 1 cut(s) | 809 |
| BshFI | GGCC | 3 cut(s) | 812, 1091, 1143 |
| BshNI | GGYRCC | 1 cut(s) | 1046 |
| BsiHKAI | GWGCWC | 2 cut(s) | 373, 1040 |
| BsiSI | CCGG | 1 cut(s) | 1133 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 250, 281, 487, 1139 |
| BsmAI | GTCTC | 1 cut(s) | 910 |
| BsmI | GAATGC | 1 cut(s) | 839 |
| BsnI | GGCC | 3 cut(s) | 812, 1091, 1143 |
| Bsp1286I | GDGCHC | 3 cut(s) | 55, 373, 1040 |
| Bsp1407I | TGTACA | 1 cut(s) | 866 |
| Bsp143I | GATC | 3 cut(s) | 511, 672, 1149 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 27 |
| BspACI | CCGC | 5 cut(s) | 344, 596, 614, 844, 1159 |
| BspANI | GGCC | 3 cut(s) | 812, 1091, 1143 |
| BspCNI | CTCAG | 3 cut(s) | 19, 252, 631 |
| BspHI | TCATGA | 1 cut(s) | 763 |
| BspLI | GGNNCC | 2 cut(s) | 811, 1048 |
| BspMAI | CTGCAG | 2 cut(s) | 799, 1045 |
| BspT107I | GGYRCC | 1 cut(s) | 1046 |
| BspTI | CTTAAG | 1 cut(s) | 380 |
| BsrGI | TGTACA | 1 cut(s) | 866 |
| BsrI | ACTGG | 3 cut(s) | 992, 1097, 1144 |
| BssECI | CCNNGG | 1 cut(s) | 1001 |
| BssMI | GATC | 3 cut(s) | 511, 672, 1149 |
| BssSI | CACGAG | 1 cut(s) | 540 |
| BssT1I | CCWWGG | 1 cut(s) | 1001 |
| Bst2BI | CACGAG | 1 cut(s) | 540 |
| Bst4CI | ACNGT | 1 cut(s) | 866 |
| Bst6I | CTCTTC | 1 cut(s) | 613 |
| BstAFI | CTTAAG | 1 cut(s) | 380 |
| BstAUI | TGTACA | 1 cut(s) | 866 |
| BstBAI | YACGTR | 2 cut(s) | 80, 1079 |
| BstC8I | GCNNGC | 2 cut(s) | 1045, 1107 |
| BstDEI | CTNAG | 3 cut(s) | 27, 260, 639 |
| BstF5I | GGATG | 1 cut(s) | 398 |
| BstKTI | GATC | 3 cut(s) | 514, 675, 1152 |
| BstMAI | GTCTC | 1 cut(s) | 910 |
| BstMBI | GATC | 3 cut(s) | 511, 672, 1149 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1044 |
| BstNSI | RCATGY | 1 cut(s) | 923 |
| BstSFI | CTRYAG | 3 cut(s) | 184, 795, 1041 |
| BstSLI | GKGCMC | 1 cut(s) | 55 |
| BstV1I | GCAGC | 1 cut(s) | 809 |
| Bsu36I | CCTNAGG | 1 cut(s) | 639 |
| BsuI | GTATCC | 1 cut(s) | 1065 |
| BsuRI | GGCC | 3 cut(s) | 812, 1091, 1143 |
| BtgZI | GCGATG | 1 cut(s) | 768 |
| BtsCI | GGATG | 1 cut(s) | 398 |
| BtsI | GCAGTG | 2 cut(s) | 669, 1038 |
| BtsIMutI | CAGTG | 4 cut(s) | 618, 669, 999, 1038 |
| Cac8I | GCNNGC | 2 cut(s) | 1045, 1107 |
| CciI | TCATGA | 1 cut(s) | 763 |
| Cfr13I | GGNCC | 2 cut(s) | 530, 810 |
| Csp6I | GTAC | 3 cut(s) | 604, 629, 867 |
| CviAII | CATG | 7 cut(s) | 101, 266, 755, 764, 920, 1102, 1167 |
| CviQI | GTAC | 3 cut(s) | 604, 629, 867 |
| DdeI | CTNAG | 3 cut(s) | 27, 260, 639 |
| DpnI | GATC | 3 cut(s) | 513, 674, 1151 |
| DpnII | GATC | 3 cut(s) | 511, 672, 1149 |
| EaeI | YGGCCR | 1 cut(s) | 1089 |
| Eam1104I | CTCTTC | 1 cut(s) | 613 |
| EarI | CTCTTC | 1 cut(s) | 613 |
| Eco130I | CCWWGG | 1 cut(s) | 1001 |
| Eco32I | GATATC | 1 cut(s) | 474 |
| Eco47I | GGWCC | 1 cut(s) | 530 |
| Eco57I | CTGAAG | 1 cut(s) | 594 |
| Eco72I | CACGTG | 1 cut(s) | 1079 |
| Eco81I | CCTNAGG | 1 cut(s) | 639 |
| EcoRI | GAATTC | 1 cut(s) | 170 |
| EcoRV | GATATC | 1 cut(s) | 474 |
| EcoT14I | CCWWGG | 1 cut(s) | 1001 |
| EcoT22I | ATGCAT | 1 cut(s) | 841 |
| ErhI | CCWWGG | 1 cut(s) | 1001 |
| FaeI | CATG | 7 cut(s) | 104, 269, 758, 767, 923, 1105, 1170 |
| FatI | CATG | 7 cut(s) | 100, 265, 754, 763, 919, 1101, 1166 |
| FauI | CCCGC | 1 cut(s) | 589 |
| FbaI | TGATCA | 1 cut(s) | 511 |
| FblI | GTMKAC | 1 cut(s) | 678 |
| Fnu4HI | GCNGC | 1 cut(s) | 798 |
| FokI | GGATG | 1 cut(s) | 385 |
| Fsp4HI | GCNGC | 1 cut(s) | 798 |
| FspBI | CTAG | 2 cut(s) | 6, 909 |
| GluI | GCNGC | 1 cut(s) | 798 |
| GsuI | CTGGAG | 1 cut(s) | 602 |
| HaeIII | GGCC | 3 cut(s) | 812, 1091, 1143 |
| HapII | CCGG | 1 cut(s) | 1133 |
| Hin1II | CATG | 7 cut(s) | 104, 269, 758, 767, 923, 1105, 1170 |
| HinfI | GANTC | 5 cut(s) | 122, 394, 875, 896, 925 |
| HpaII | CCGG | 1 cut(s) | 1133 |
| HphI | GGTGA | 2 cut(s) | 740, 766 |
| Hpy166II | GTNNAC | 4 cut(s) | 679, 862, 963, 1164 |
| Hpy188I | TCNGA | 4 cut(s) | 403, 853, 895, 915 |
| Hpy188III | TCNNGA | 8 cut(s) | 175, 218, 374, 413, 581, 764, 955, 983 |
| Hpy8I | GTNNAC | 4 cut(s) | 679, 862, 963, 1164 |
| Hpy99I | CGWCG | 1 cut(s) | 419 |
| HpyAV | CCTTC | 1 cut(s) | 32 |
| HpyCH4III | ACNGT | 1 cut(s) | 866 |
| HpyCH4IV | ACGT | 2 cut(s) | 79, 1078 |
| HpyCH4V | TGCA | 6 cut(s) | 59, 797, 839, 1043, 1076, 1109 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1044 |
| HpyF3I | CTNAG | 3 cut(s) | 27, 260, 639 |
| HpySE526I | ACGT | 2 cut(s) | 79, 1078 |
| Hsp92II | CATG | 7 cut(s) | 104, 269, 758, 767, 923, 1105, 1170 |
| Ksp22I | TGATCA | 1 cut(s) | 511 |
| Kzo9I | GATC | 3 cut(s) | 511, 672, 1149 |
| LmnI | GCTCC | 2 cut(s) | 1035, 1135 |
| Lsp1109I | GCAGC | 1 cut(s) | 809 |
| LweI | GCATC | 5 cut(s) | 13, 730, 791, 1009, 1133 |
| MaeI | CTAG | 2 cut(s) | 6, 909 |
| MaeII | ACGT | 2 cut(s) | 79, 1078 |
| MaeIII | GTNAC | 4 cut(s) | 123, 553, 942, 996 |
| MalI | GATC | 3 cut(s) | 513, 674, 1151 |
| MboI | GATC | 3 cut(s) | 511, 672, 1149 |
| MboII | GAAGA | 6 cut(s) | 401, 478, 481, 600, 661, 998 |
| MfeI | CAATTG | 2 cut(s) | 515, 968 |
| MhlI | GDGCHC | 3 cut(s) | 55, 373, 1040 |
| MlsI | TGGCCA | 1 cut(s) | 1091 |
| MluCI | AATT | 8 cut(s) | 114, 136, 170, 224, 334, 515, 559, 968 |
| MluNI | TGGCCA | 1 cut(s) | 1091 |
| MlyI | GAGTC | 3 cut(s) | 131, 403, 884 |
| MnlI | CCTC | 8 cut(s) | 28, 254, 255, 320, 379, 442, 491, 634 |
| Mox20I | TGGCCA | 1 cut(s) | 1091 |
| Mph1103I | ATGCAT | 1 cut(s) | 841 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MscI | TGGCCA | 1 cut(s) | 1091 |
| MseI | TTAA | 7 cut(s) | 17, 129, 141, 207, 381, 492, 698 |
| MslI | CAYNNNNRTG | 3 cut(s) | 366, 417, 753 |
| Msp20I | TGGCCA | 1 cut(s) | 1091 |
| MspA1I | CMGCKG | 3 cut(s) | 596, 614, 800 |
| MspCI | CTTAAG | 1 cut(s) | 380 |
| MspI | CCGG | 1 cut(s) | 1133 |
| MunI | CAATTG | 2 cut(s) | 515, 968 |
| Mva1269I | GAATGC | 1 cut(s) | 839 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1044 |
| NdeII | GATC | 3 cut(s) | 511, 672, 1149 |
| NlaIII | CATG | 7 cut(s) | 104, 269, 758, 767, 923, 1105, 1170 |
| NlaIV | GGNNCC | 2 cut(s) | 811, 1048 |
| NmuCI | GTSAC | 2 cut(s) | 123, 553 |
| NsiI | ATGCAT | 1 cut(s) | 841 |
| NspI | RCATGY | 1 cut(s) | 923 |
| OliI | CACNNNNGTG | 1 cut(s) | 366 |
| PagI | TCATGA | 1 cut(s) | 763 |
| PciI | ACATGT | 1 cut(s) | 919 |
| PctI | GAATGC | 1 cut(s) | 839 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 2 cut(s) | 896, 925 |
| PkrI | GCNGC | 1 cut(s) | 799 |
| PleI | GAGTC | 3 cut(s) | 130, 402, 883 |
| PmaCI | CACGTG | 1 cut(s) | 1079 |
| PmlI | CACGTG | 1 cut(s) | 1079 |
| PpsI | GAGTC | 3 cut(s) | 130, 402, 883 |
| Ppu21I | YACGTR | 2 cut(s) | 80, 1079 |
| PscI | ACATGT | 1 cut(s) | 919 |
| PspCI | CACGTG | 1 cut(s) | 1079 |
| PspN4I | GGNNCC | 2 cut(s) | 811, 1048 |
| PspPI | GGNCC | 2 cut(s) | 530, 810 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 981, 1013 |
| PstI | CTGCAG | 2 cut(s) | 799, 1045 |
| PvuII | CAGCTG | 1 cut(s) | 800 |
| RsaI | GTAC | 3 cut(s) | 605, 630, 868 |
| RsaNI | GTAC | 3 cut(s) | 604, 629, 867 |
| RseI | CAYNNNNRTG | 3 cut(s) | 366, 417, 753 |
| SaqAI | TTAA | 7 cut(s) | 17, 129, 141, 207, 381, 492, 698 |
| SatI | GCNGC | 1 cut(s) | 798 |
| Sau3AI | GATC | 3 cut(s) | 511, 672, 1149 |
| Sau96I | GGNCC | 2 cut(s) | 530, 810 |
| ScaI | AGTACT | 1 cut(s) | 605 |
| SchI | GAGTC | 3 cut(s) | 131, 403, 884 |
| SduI | GDGCHC | 3 cut(s) | 55, 373, 1040 |
| SfaNI | GCATC | 5 cut(s) | 13, 730, 791, 1009, 1133 |
| SfcI | CTRYAG | 3 cut(s) | 184, 795, 1041 |
| SinI | GGWCC | 1 cut(s) | 530 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 366, 417, 753 |
| SmlI | CTYRAG | 3 cut(s) | 374, 380, 446 |
| SmoI | CTYRAG | 3 cut(s) | 374, 380, 446 |
| Sse9I | AATT | 8 cut(s) | 114, 136, 170, 224, 334, 515, 559, 968 |
| SsiI | CCGC | 5 cut(s) | 344, 596, 614, 844, 1159 |
| SspI | AATATT | 1 cut(s) | 687 |
| SspMI | CTAG | 2 cut(s) | 6, 909 |
| StyI | CCWWGG | 1 cut(s) | 1001 |
| TaaI | ACNGT | 1 cut(s) | 866 |
| TaiI | ACGT | 2 cut(s) | 82, 1081 |
| TaqI | TCGA | 2 cut(s) | 954, 1152 |
| TasI | AATT | 8 cut(s) | 114, 136, 170, 224, 334, 515, 559, 968 |
| TatI | WGTACW | 2 cut(s) | 603, 866 |
| TfiI | GAWTC | 2 cut(s) | 896, 925 |
| Tru1I | TTAA | 7 cut(s) | 17, 129, 141, 207, 381, 492, 698 |
| Tru9I | TTAA | 7 cut(s) | 17, 129, 141, 207, 381, 492, 698 |
| TscAI | CASTG | 4 cut(s) | 625, 669, 999, 1045 |
| TseFI | GTSAC | 2 cut(s) | 123, 553 |
| TseI | GCWGC | 1 cut(s) | 797 |
| Tsp45I | GTSAC | 2 cut(s) | 123, 553 |
| TspDTI | ATGAA | 4 cut(s) | 89, 282, 752, 846 |
| TspRI | CASTG | 4 cut(s) | 625, 669, 999, 1045 |
| Vha464I | CTTAAG | 1 cut(s) | 380 |
| VpaK11BI | GGWCC | 1 cut(s) | 530 |
| XapI | RAATTY | 4 cut(s) | 136, 170, 224, 559 |
| XceI | RCATGY | 1 cut(s) | 923 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 484, 999 |
| XmiI | GTMKAC | 1 cut(s) | 678 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |
| XspI | CTAG | 2 cut(s) | 6, 909 |
| ZrmI | AGTACT | 1 cut(s) | 605 |
| Zsp2I | ATGCAT | 1 cut(s) | 841 |