Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-BED | PF02892 | 62 - 111 | 5.9e-07 | BED zinc finger |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 48 |
| AciI | CCGC | 3 cut(s) | 72, 125, 166 |
| AcvI | CACGTG | 1 cut(s) | 319 |
| AdeI | CACNNNGTG | 1 cut(s) | 140 |
| AfaI | GTAC | 3 cut(s) | 105, 257, 374 |
| AflIII | ACRYGT | 1 cut(s) | 316 |
| AgsI | TTSAA | 2 cut(s) | 101, 246 |
| AjiI | CACGTC | 1 cut(s) | 119 |
| AjnI | CCWGG | 1 cut(s) | 235 |
| AluBI | AGCT | 2 cut(s) | 38, 177 |
| AluI | AGCT | 2 cut(s) | 38, 177 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 398 |
| ApeKI | GCWGC | 2 cut(s) | 89, 190 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 370, 402 |
| AsuHPI | GGTGA | 1 cut(s) | 333 |
| BbrPI | CACGTG | 1 cut(s) | 319 |
| BbvI | GCAGC | 2 cut(s) | 76, 202 |
| BccI | CCATC | 1 cut(s) | 212 |
| BciT130I | CCWGG | 1 cut(s) | 237 |
| BfaI | CTAG | 1 cut(s) | 54 |
| BfmI | CTRYAG | 2 cut(s) | 45, 90 |
| BisI | GCNGC | 2 cut(s) | 90, 191 |
| BlsI | GCNGC | 2 cut(s) | 91, 192 |
| BmcAI | AGTACT | 2 cut(s) | 257, 374 |
| Bme1390I | CCNGG | 1 cut(s) | 237 |
| BmgBI | CACGTC | 1 cut(s) | 119 |
| BmrFI | CCNGG | 1 cut(s) | 237 |
| BmsI | GCATC | 1 cut(s) | 66 |
| BpmI | CTGGAG | 1 cut(s) | 268 |
| BsaAI | YACGTR | 1 cut(s) | 319 |
| BsaJI | CCNNGG | 1 cut(s) | 236 |
| Bse1I | ACTGG | 2 cut(s) | 107, 328 |
| Bse3DI | GCAATG | 2 cut(s) | 298, 312 |
| BseBI | CCWGG | 1 cut(s) | 237 |
| BseDI | CCNNGG | 1 cut(s) | 236 |
| BseMI | GCAATG | 2 cut(s) | 298, 312 |
| BseNI | ACTGG | 2 cut(s) | 107, 328 |
| BseXI | GCAGC | 2 cut(s) | 76, 202 |
| BsgI | GTGCAG | 1 cut(s) | 352 |
| BslFI | GGGAC | 2 cut(s) | 76, 246 |
| BsmFI | GGGAC | 2 cut(s) | 76, 246 |
| BspACI | CCGC | 3 cut(s) | 72, 125, 166 |
| BspHI | TCATGA | 1 cut(s) | 228 |
| BspMAI | CTGCAG | 1 cut(s) | 94 |
| BsrDI | GCAATG | 2 cut(s) | 298, 312 |
| BsrI | ACTGG | 2 cut(s) | 107, 328 |
| BssECI | CCNNGG | 1 cut(s) | 236 |
| Bst2UI | CCWGG | 1 cut(s) | 237 |
| Bst4CI | ACNGT | 2 cut(s) | 46, 260 |
| BstBAI | YACGTR | 1 cut(s) | 319 |
| BstC8I | GCNNGC | 2 cut(s) | 164, 277 |
| BstNI | CCWGG | 1 cut(s) | 237 |
| BstSCI | CCNGG | 1 cut(s) | 235 |
| BstSFI | CTRYAG | 2 cut(s) | 45, 90 |
| BstV1I | GCAGC | 2 cut(s) | 76, 202 |
| BtrI | CACGTC | 1 cut(s) | 119 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 335 |
| Cac8I | GCNNGC | 2 cut(s) | 164, 277 |
| CaiI | CAGNNNCTG | 1 cut(s) | 398 |
| CciI | TCATGA | 1 cut(s) | 228 |
| Csp6I | GTAC | 3 cut(s) | 104, 256, 373 |
| CviAII | CATG | 1 cut(s) | 229 |
| CviJI | RGCY | 3 cut(s) | 38, 177, 235 |
| CviKI_1 | RGCY | 3 cut(s) | 38, 177, 235 |
| CviQI | GTAC | 3 cut(s) | 104, 256, 373 |
| DraIII | CACNNNGTG | 1 cut(s) | 140 |
| Eco72I | CACGTG | 1 cut(s) | 319 |
| EcoRII | CCWGG | 1 cut(s) | 235 |
| FaeI | CATG | 1 cut(s) | 232 |
| FaiI | YATR | 4 cut(s) | 230, 273, 351, 415 |
| FaqI | GGGAC | 2 cut(s) | 76, 246 |
| FatI | CATG | 1 cut(s) | 228 |
| FauI | CCCGC | 1 cut(s) | 79 |
| FblI | GTMKAC | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 2 cut(s) | 90, 191 |
| Fsp4HI | GCNGC | 2 cut(s) | 90, 191 |
| FspBI | CTAG | 1 cut(s) | 54 |
| GluI | GCNGC | 2 cut(s) | 90, 191 |
| GsuI | CTGGAG | 1 cut(s) | 268 |
| Hin1II | CATG | 1 cut(s) | 232 |
| HinfI | GANTC | 6 cut(s) | 50, 79, 211, 281, 386, 395 |
| HphI | GGTGA | 1 cut(s) | 333 |
| Hpy166II | GTNNAC | 3 cut(s) | 49, 122, 406 |
| Hpy188I | TCNGA | 1 cut(s) | 24 |
| Hpy188III | TCNNGA | 6 cut(s) | 61, 199, 215, 229, 285, 399 |
| Hpy8I | GTNNAC | 3 cut(s) | 49, 122, 406 |
| HpyCH4III | ACNGT | 2 cut(s) | 46, 260 |
| HpyCH4IV | ACGT | 2 cut(s) | 118, 318 |
| HpyCH4V | TGCA | 5 cut(s) | 92, 207, 252, 275, 333 |
| HpySE526I | ACGT | 2 cut(s) | 118, 318 |
| Hsp92II | CATG | 1 cut(s) | 232 |
| Lsp1109I | GCAGC | 2 cut(s) | 76, 202 |
| LweI | GCATC | 1 cut(s) | 66 |
| MaeI | CTAG | 1 cut(s) | 54 |
| MaeII | ACGT | 2 cut(s) | 118, 318 |
| MboII | GAAGA | 2 cut(s) | 155, 181 |
| MfeI | CAATTG | 1 cut(s) | 180 |
| MluCI | AATT | 2 cut(s) | 180, 345 |
| MlyI | GAGTC | 3 cut(s) | 44, 88, 275 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 3 cut(s) | 25, 303, 357 |
| MspA1I | CMGCKG | 1 cut(s) | 38 |
| MspR9I | CCNGG | 1 cut(s) | 237 |
| MunI | CAATTG | 1 cut(s) | 180 |
| MvaI | CCWGG | 1 cut(s) | 237 |
| NlaIII | CATG | 1 cut(s) | 232 |
| PagI | TCATGA | 1 cut(s) | 228 |
| PfeI | GAWTC | 3 cut(s) | 211, 386, 395 |
| PkrI | GCNGC | 2 cut(s) | 91, 192 |
| PleI | GAGTC | 3 cut(s) | 44, 87, 275 |
| PmaCI | CACGTG | 1 cut(s) | 319 |
| PmlI | CACGTG | 1 cut(s) | 319 |
| PpsI | GAGTC | 3 cut(s) | 44, 87, 275 |
| Ppu21I | YACGTR | 1 cut(s) | 319 |
| Psp6I | CCWGG | 1 cut(s) | 235 |
| PspCI | CACGTG | 1 cut(s) | 319 |
| PspGI | CCWGG | 1 cut(s) | 235 |
| PstI | CTGCAG | 1 cut(s) | 94 |
| PstNI | CAGNNNCTG | 1 cut(s) | 398 |
| PvuII | CAGCTG | 1 cut(s) | 38 |
| RsaI | GTAC | 3 cut(s) | 105, 257, 374 |
| RsaNI | GTAC | 3 cut(s) | 104, 256, 373 |
| SatI | GCNGC | 2 cut(s) | 90, 191 |
| ScaI | AGTACT | 2 cut(s) | 257, 374 |
| SchI | GAGTC | 3 cut(s) | 44, 88, 275 |
| ScrFI | CCNGG | 1 cut(s) | 237 |
| SetI | ASST | 5 cut(s) | 40, 121, 179, 272, 321 |
| SfaNI | GCATC | 1 cut(s) | 66 |
| SfcI | CTRYAG | 2 cut(s) | 45, 90 |
| Sse9I | AATT | 2 cut(s) | 180, 345 |
| SsiI | CCGC | 3 cut(s) | 72, 125, 166 |
| SspMI | CTAG | 1 cut(s) | 54 |
| StyD4I | CCNGG | 1 cut(s) | 235 |
| TaaI | ACNGT | 2 cut(s) | 46, 260 |
| TaiI | ACGT | 2 cut(s) | 121, 321 |
| TaqI | TCGA | 1 cut(s) | 198 |
| TasI | AATT | 2 cut(s) | 180, 345 |
| TatI | WGTACW | 2 cut(s) | 255, 372 |
| TfiI | GAWTC | 3 cut(s) | 211, 386, 395 |
| TscAI | CASTG | 2 cut(s) | 114, 335 |
| TseI | GCWGC | 2 cut(s) | 89, 190 |
| TspDTI | ATGAA | 2 cut(s) | 217, 245 |
| TspGWI | ACGGA | 1 cut(s) | 168 |
| TspRI | CASTG | 2 cut(s) | 114, 335 |
| XmiI | GTMKAC | 1 cut(s) | 48 |
| XspI | CTAG | 1 cut(s) | 54 |
| ZrmI | AGTACT | 2 cut(s) | 257, 374 |