BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 422 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 555, 721, 1319 |
| Acc65I | GGTACC | 1 cut(s) | 670 |
| AccB1I | GGYRCC | 2 cut(s) | 670, 1904 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1075, 1941 |
| AccI | GTMKAC | 1 cut(s) | 1543 |
| AccII | CGCG | 1 cut(s) | 939 |
| AciI | CCGC | 3 cut(s) | 346, 1298, 1976 |
| AclWI | GGATC | 5 cut(s) | 560, 646, 659, 1403, 1416 |
| AcoI | YGGCCR | 1 cut(s) | 1299 |
| AcsI | RAATTY | 6 cut(s) | 228, 424, 637, 1275, 1452, 1646 |
| AcuI | CTGAAG | 3 cut(s) | 948, 1016, 1620 |
| AdeI | CACNNNGTG | 1 cut(s) | 403 |
| AfaI | GTAC | 9 cut(s) | 130, 294, 672, 936, 1186, 1418, 1780, 1787, 1894 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 686, 1075, 1635, 1737, 1941 |
| AjiI | CACGTC | 1 cut(s) | 1476 |
| AjnI | CCWGG | 3 cut(s) | 274, 544, 591 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 777, 809 |
| AluBI | AGCT | 6 cut(s) | 327, 707, 994, 1006, 1214, 1326 |
| AluI | AGCT | 6 cut(s) | 327, 707, 994, 1006, 1214, 1326 |
| Alw21I | GWGCWC | 3 cut(s) | 99, 319, 1022 |
| Alw26I | GTCTC | 3 cut(s) | 205, 1466, 1837 |
| AlwI | GGATC | 5 cut(s) | 560, 646, 659, 1403, 1416 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 592, 1844 |
| Ama87I | CYCGRG | 2 cut(s) | 1734, 1916 |
| AoxI | GGCC | 5 cut(s) | 120, 742, 1299, 1728, 1806 |
| ApeKI | GCWGC | 5 cut(s) | 1211, 1377, 1604, 1844, 1978 |
| ApoI | RAATTY | 6 cut(s) | 228, 424, 637, 1275, 1452, 1646 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1525, 1557 |
| AseI | ATTAAT | 1 cut(s) | 1556 |
| Asp718I | GGTACC | 1 cut(s) | 670 |
| AspLEI | GCGC | 1 cut(s) | 69 |
| AspS9I | GGNCC | 5 cut(s) | 37, 120, 742, 1729, 1955 |
| AsuC2I | CCSGG | 3 cut(s) | 42, 414, 1548 |
| AsuHPI | GGTGA | 3 cut(s) | 701, 1432, 1472 |
| AvaI | CYCGRG | 2 cut(s) | 1734, 1916 |
| AvaII | GGWCC | 2 cut(s) | 37, 1955 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 276, 309 |
| BamHI | GGATCC | 2 cut(s) | 651, 1408 |
| BanI | GGYRCC | 2 cut(s) | 670, 1904 |
| BanII | GRGCYC | 1 cut(s) | 813 |
| BauI | CACGAG | 1 cut(s) | 873 |
| BbsI | GAAGAC | 1 cut(s) | 1074 |
| Bbv12I | GWGCWC | 3 cut(s) | 99, 319, 1022 |
| BbvI | GCAGC | 5 cut(s) | 1223, 1364, 1616, 1831, 1990 |
| BccI | CCATC | 5 cut(s) | 181, 682, 1490, 1628, 2005 |
| BceAI | ACGGC | 2 cut(s) | 228, 1964 |
| BciT130I | CCWGG | 3 cut(s) | 276, 546, 593 |
| BciVI | GTATCC | 1 cut(s) | 1111 |
| BclI | TGATCA | 3 cut(s) | 337, 1042, 1332 |
| BcnI | CCSGG | 3 cut(s) | 42, 414, 1548 |
| BcoDI | GTCTC | 3 cut(s) | 205, 1466, 1837 |
| BfaI | CTAG | 3 cut(s) | 132, 312, 1050 |
| BfmI | CTRYAG | 1 cut(s) | 349 |
| BfuI | GTATCC | 1 cut(s) | 1111 |
| BglII | AGATCT | 1 cut(s) | 158 |
| BisI | GCNGC | 6 cut(s) | 1212, 1299, 1378, 1605, 1845, 1979 |
| BlsI | GCNGC | 6 cut(s) | 1213, 1300, 1379, 1606, 1846, 1980 |
| Bme1390I | CCNGG | 6 cut(s) | 42, 276, 414, 546, 593, 1548 |
| Bme18I | GGWCC | 2 cut(s) | 37, 1955 |
| BmeT110I | CYCGRG | 2 cut(s) | 1734, 1916 |
| BmgBI | CACGTC | 1 cut(s) | 1476 |
| BmgT120I | GGNCC | 5 cut(s) | 37, 120, 742, 1729, 1955 |
| BmrFI | CCNGG | 6 cut(s) | 42, 276, 414, 546, 593, 1548 |
| BmrI | ACTGGG | 1 cut(s) | 230 |
| BmsI | GCATC | 5 cut(s) | 530, 1198, 1281, 1518, 1622 |
| BmuI | ACTGGG | 1 cut(s) | 230 |
| BpiI | GAAGAC | 1 cut(s) | 1074 |
| BpuMI | CCSGG | 3 cut(s) | 42, 414, 1548 |
| BsaBI | GATNNNNATC | 2 cut(s) | 374, 1656 |
| BsaJI | CCNNGG | 7 cut(s) | 40, 544, 592, 904, 1412, 1735, 1935 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 686, 1075, 1635, 1737, 1941 |
| Bse118I | RCCGGY | 1 cut(s) | 744 |
| Bse1I | ACTGG | 5 cut(s) | 148, 181, 236, 638, 1829 |
| Bse3DI | GCAATG | 1 cut(s) | 521 |
| Bse8I | GATNNNNATC | 2 cut(s) | 374, 1656 |
| BseBI | CCWGG | 3 cut(s) | 276, 546, 593 |
| BseDI | CCNNGG | 7 cut(s) | 40, 544, 592, 904, 1412, 1735, 1935 |
| BseGI | GGATG | 3 cut(s) | 131, 545, 1672 |
| BseJI | GATNNNNATC | 2 cut(s) | 374, 1656 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 686, 1075, 1635, 1737, 1941 |
| BseMI | GCAATG | 1 cut(s) | 521 |
| BseMII | CTCAG | 3 cut(s) | 380, 461, 1461 |
| BseNI | ACTGG | 5 cut(s) | 148, 181, 236, 638, 1829 |
| BseXI | GCAGC | 5 cut(s) | 1223, 1364, 1616, 1831, 1990 |
| BseYI | CCCAGC | 1 cut(s) | 1231 |
| Bsh1236I | CGCG | 1 cut(s) | 939 |
| BshFI | GGCC | 5 cut(s) | 122, 744, 1301, 1730, 1808 |
| BshNI | GGYRCC | 2 cut(s) | 670, 1904 |
| BsiHKAI | GWGCWC | 3 cut(s) | 99, 319, 1022 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1734, 1916 |
| BsiSI | CCGG | 5 cut(s) | 42, 123, 413, 745, 1547 |
| BslFI | GGGAC | 2 cut(s) | 23, 1070 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 686, 1075, 1635, 1737, 1941 |
| BsmAI | GTCTC | 3 cut(s) | 205, 1466, 1837 |
| BsmBI | CGTCTC | 1 cut(s) | 1466 |
| BsmFI | GGGAC | 2 cut(s) | 23, 1070 |
| BsmI | GAATGC | 1 cut(s) | 491 |
| BsnI | GGCC | 5 cut(s) | 122, 744, 1301, 1730, 1808 |
| BsoBI | CYCGRG | 2 cut(s) | 1734, 1916 |
| Bsp1286I | GDGCHC | 4 cut(s) | 99, 319, 813, 1022 |
| Bsp1407I | TGTACA | 1 cut(s) | 1184 |
| Bsp143I | GATC | 9 cut(s) | 158, 337, 434, 552, 651, 1042, 1332, 1408, 1719 |
| BspACI | CCGC | 3 cut(s) | 346, 1298, 1976 |
| BspANI | GGCC | 5 cut(s) | 122, 744, 1301, 1730, 1808 |
| BspCNI | CTCAG | 3 cut(s) | 379, 460, 1462 |
| BspFNI | CGCG | 1 cut(s) | 939 |
| BspHI | TCATGA | 2 cut(s) | 927, 1504 |
| BspPI | GGATC | 5 cut(s) | 560, 646, 659, 1403, 1416 |
| BspT107I | GGYRCC | 2 cut(s) | 670, 1904 |
| BsrDI | GCAATG | 1 cut(s) | 521 |
| BsrFI | RCCGGY | 1 cut(s) | 744 |
| BsrGI | TGTACA | 1 cut(s) | 1184 |
| BsrI | ACTGG | 5 cut(s) | 148, 181, 236, 638, 1829 |
| BssAI | RCCGGY | 1 cut(s) | 744 |
| BssECI | CCNNGG | 7 cut(s) | 40, 544, 592, 904, 1412, 1735, 1935 |
| BssMI | GATC | 9 cut(s) | 158, 337, 434, 552, 651, 1042, 1332, 1408, 1719 |
| BssSI | CACGAG | 1 cut(s) | 873 |
| BssT1I | CCWWGG | 3 cut(s) | 904, 1412, 1935 |
| Bst2BI | CACGAG | 1 cut(s) | 873 |
| Bst2UI | CCWGG | 3 cut(s) | 276, 546, 593 |
| Bst4CI | ACNGT | 8 cut(s) | 115, 565, 647, 670, 1180, 1840, 1886, 1892 |
| Bst6I | CTCTTC | 3 cut(s) | 444, 1517, 1710 |
| BstAUI | TGTACA | 1 cut(s) | 1184 |
| BstC8I | GCNNGC | 5 cut(s) | 139, 193, 325, 1111, 1296 |
| BstDEI | CTNAG | 4 cut(s) | 366, 447, 1470, 1538 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 684 |
| BstF5I | GGATG | 3 cut(s) | 131, 545, 1672 |
| BstFNI | CGCG | 1 cut(s) | 939 |
| BstHHI | GCGC | 1 cut(s) | 69 |
| BstKTI | GATC | 9 cut(s) | 161, 340, 437, 555, 654, 1045, 1335, 1411, 1722 |
| BstMAI | GTCTC | 3 cut(s) | 205, 1466, 1837 |
| BstMBI | GATC | 9 cut(s) | 158, 337, 434, 552, 651, 1042, 1332, 1408, 1719 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 240, 1232, 1610 |
| BstNI | CCWGG | 3 cut(s) | 276, 546, 593 |
| BstNSI | RCATGY | 3 cut(s) | 323, 737, 838 |
| BstSCI | CCNGG | 6 cut(s) | 40, 274, 412, 544, 591, 1546 |
| BstSFI | CTRYAG | 1 cut(s) | 349 |
| BstUI | CGCG | 1 cut(s) | 939 |
| BstV1I | GCAGC | 5 cut(s) | 1223, 1364, 1616, 1831, 1990 |
| BstV2I | GAAGAC | 1 cut(s) | 1074 |
| BstX2I | RGATCY | 3 cut(s) | 158, 651, 1408 |
| BstYI | RGATCY | 3 cut(s) | 158, 651, 1408 |
| BsuI | GTATCC | 1 cut(s) | 1111 |
| BsuRI | GGCC | 5 cut(s) | 122, 744, 1301, 1730, 1808 |
| BtrI | CACGTC | 1 cut(s) | 1476 |
| BtsCI | GGATG | 3 cut(s) | 131, 545, 1672 |
| BtsIMutI | CAGTG | 1 cut(s) | 155 |
| Cac8I | GCNNGC | 5 cut(s) | 139, 193, 325, 1111, 1296 |
| CaiI | CAGNNNCTG | 2 cut(s) | 592, 1844 |
| CciI | TCATGA | 2 cut(s) | 927, 1504 |
| CfoI | GCGC | 1 cut(s) | 69 |
| Cfr10I | RCCGGY | 1 cut(s) | 744 |
| Cfr13I | GGNCC | 5 cut(s) | 37, 120, 742, 1729, 1955 |
| CseI | GACGC | 1 cut(s) | 312 |
| Csp6I | GTAC | 9 cut(s) | 129, 293, 671, 935, 1185, 1417, 1779, 1786, 1893 |
| CviQI | GTAC | 9 cut(s) | 129, 293, 671, 935, 1185, 1417, 1779, 1786, 1893 |
| DdeI | CTNAG | 4 cut(s) | 366, 447, 1470, 1538 |
| DpnI | GATC | 9 cut(s) | 160, 339, 436, 554, 653, 1044, 1334, 1410, 1721 |
| DpnII | GATC | 9 cut(s) | 158, 337, 434, 552, 651, 1042, 1332, 1408, 1719 |
| DraIII | CACNNNGTG | 1 cut(s) | 403 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 555, 721, 1319 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 555, 721, 1319 |
| EaeI | YGGCCR | 1 cut(s) | 1299 |
| Eam1104I | CTCTTC | 3 cut(s) | 444, 1517, 1710 |
| EarI | CTCTTC | 3 cut(s) | 444, 1517, 1710 |
| Eco130I | CCWWGG | 3 cut(s) | 904, 1412, 1935 |
| Eco24I | GRGCYC | 1 cut(s) | 813 |
| Eco47I | GGWCC | 2 cut(s) | 37, 1955 |
| Eco57I | CTGAAG | 3 cut(s) | 948, 1016, 1620 |
| Eco88I | CYCGRG | 2 cut(s) | 1734, 1916 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 684 |
| EcoO109I | RGGNCCY | 1 cut(s) | 37 |
| EcoRI | GAATTC | 1 cut(s) | 637 |
| EcoRII | CCWGG | 3 cut(s) | 274, 544, 591 |
| EcoT14I | CCWWGG | 3 cut(s) | 904, 1412, 1935 |
| EcoT38I | GRGCYC | 1 cut(s) | 813 |
| ErhI | CCWWGG | 3 cut(s) | 904, 1412, 1935 |
| Esp3I | CGTCTC | 1 cut(s) | 1466 |
| FalI | AAGNNNNNCTT | 7 cut(s) | 316, 348, 798, 830, 888, 920, 2000 |
| FaqI | GGGAC | 2 cut(s) | 23, 1070 |
| FauNDI | CATATG | 3 cut(s) | 1071, 1123, 1189 |
| FbaI | TGATCA | 3 cut(s) | 337, 1042, 1332 |
| FblI | GTMKAC | 1 cut(s) | 1543 |
| Fnu4HI | GCNGC | 6 cut(s) | 1212, 1299, 1378, 1605, 1845, 1979 |
| FokI | GGATG | 3 cut(s) | 138, 552, 1679 |
| FriOI | GRGCYC | 1 cut(s) | 813 |
| Fsp4HI | GCNGC | 6 cut(s) | 1212, 1299, 1378, 1605, 1845, 1979 |
| FspBI | CTAG | 3 cut(s) | 132, 312, 1050 |
| GlaI | GCGC | 1 cut(s) | 68 |
| GluI | GCNGC | 6 cut(s) | 1212, 1299, 1378, 1605, 1845, 1979 |
| GsaI | CCCAGC | 1 cut(s) | 1235 |
| HaeIII | GGCC | 5 cut(s) | 122, 744, 1301, 1730, 1808 |
| HapII | CCGG | 5 cut(s) | 42, 123, 413, 745, 1547 |
| HgaI | GACGC | 1 cut(s) | 312 |
| HhaI | GCGC | 1 cut(s) | 69 |
| Hin6I | GCGC | 1 cut(s) | 67 |
| HinP1I | GCGC | 1 cut(s) | 67 |
| HindIII | AAGCTT | 1 cut(s) | 325 |
| HinfI | GANTC | 7 cut(s) | 262, 526, 683, 1127, 1165, 1313, 1850 |
| HpaII | CCGG | 5 cut(s) | 42, 123, 413, 745, 1547 |
| HphI | GGTGA | 3 cut(s) | 701, 1432, 1472 |
| Hpy166II | GTNNAC | 4 cut(s) | 568, 576, 753, 1544 |
| Hpy8I | GTNNAC | 4 cut(s) | 568, 576, 753, 1544 |
| Hpy99I | CGWCG | 1 cut(s) | 306 |
| HpyAV | CCTTC | 2 cut(s) | 1453, 1559 |
| HpyCH4III | ACNGT | 8 cut(s) | 115, 565, 647, 670, 1180, 1840, 1886, 1892 |
| HpyCH4IV | ACGT | 1 cut(s) | 1475 |
| HpyCH4V | TGCA | 8 cut(s) | 153, 167, 323, 382, 1211, 1247, 1294, 1531 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 240, 1232, 1610 |
| HpyF3I | CTNAG | 4 cut(s) | 366, 447, 1470, 1538 |
| HpySE526I | ACGT | 1 cut(s) | 1475 |
| HspAI | GCGC | 1 cut(s) | 67 |
| KflI | GGGWCCC | 1 cut(s) | 37 |
| KpnI | GGTACC | 1 cut(s) | 674 |
| Ksp22I | TGATCA | 3 cut(s) | 337, 1042, 1332 |
| Kzo9I | GATC | 9 cut(s) | 158, 337, 434, 552, 651, 1042, 1332, 1408, 1719 |
| LmnI | GCTCC | 4 cut(s) | 94, 284, 406, 816 |
| Lsp1109I | GCAGC | 5 cut(s) | 1223, 1364, 1616, 1831, 1990 |
| LweI | GCATC | 5 cut(s) | 530, 1198, 1281, 1518, 1622 |
| MaeI | CTAG | 3 cut(s) | 132, 312, 1050 |
| MaeII | ACGT | 1 cut(s) | 1475 |
| MaeIII | GTNAC | 6 cut(s) | 143, 629, 689, 1460, 1669, 1886 |
| MalI | GATC | 9 cut(s) | 160, 339, 436, 554, 653, 1044, 1334, 1410, 1721 |
| MboI | GATC | 9 cut(s) | 158, 337, 434, 552, 651, 1042, 1332, 1408, 1719 |
| MboII | GAAGA | 8 cut(s) | 431, 989, 1074, 1169, 1504, 1574, 1634, 1727 |
| MfeI | CAATTG | 2 cut(s) | 105, 1392 |
| MflI | RGATCY | 3 cut(s) | 158, 651, 1408 |
| MhlI | GDGCHC | 4 cut(s) | 99, 319, 813, 1022 |
| MlyI | GAGTC | 4 cut(s) | 256, 1174, 1307, 1844 |
| MmeI | TCCRAC | 1 cut(s) | 629 |
| MseI | TTAA | 8 cut(s) | 206, 468, 608, 840, 948, 1482, 1556, 1860 |
| MspA1I | CMGCKG | 2 cut(s) | 348, 994 |
| MspI | CCGG | 5 cut(s) | 42, 123, 413, 745, 1547 |
| MspR9I | CCNGG | 6 cut(s) | 42, 276, 414, 546, 593, 1548 |
| MunI | CAATTG | 2 cut(s) | 105, 1392 |
| Mva1269I | GAATGC | 1 cut(s) | 491 |
| MvaI | CCWGG | 3 cut(s) | 276, 546, 593 |
| MvnI | CGCG | 1 cut(s) | 939 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 240, 1232, 1610 |
| NciI | CCSGG | 3 cut(s) | 42, 414, 1548 |
| NdeI | CATATG | 3 cut(s) | 1071, 1123, 1189 |
| NdeII | GATC | 9 cut(s) | 158, 337, 434, 552, 651, 1042, 1332, 1408, 1719 |
| NmuCI | GTSAC | 4 cut(s) | 629, 689, 1460, 1669 |
| NspI | RCATGY | 3 cut(s) | 323, 737, 838 |
| PaeR7I | CTCGAG | 1 cut(s) | 1916 |
| PagI | TCATGA | 2 cut(s) | 927, 1504 |
| PctI | GAATGC | 1 cut(s) | 491 |
| PfeI | GAWTC | 3 cut(s) | 526, 683, 1127 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1075, 1941 |
| PkrI | GCNGC | 6 cut(s) | 1213, 1300, 1379, 1606, 1846, 1980 |
| PleI | GAGTC | 4 cut(s) | 256, 1173, 1307, 1844 |
| PpsI | GAGTC | 4 cut(s) | 256, 1173, 1307, 1844 |
| PpuMI | RGGWCCY | 1 cut(s) | 37 |
| PshBI | ATTAAT | 1 cut(s) | 1556 |
| PsiI | TTATAA | 1 cut(s) | 422 |
| Psp5II | RGGWCCY | 1 cut(s) | 37 |
| Psp6I | CCWGG | 3 cut(s) | 274, 544, 591 |
| PspFI | CCCAGC | 1 cut(s) | 1231 |
| PspGI | CCWGG | 3 cut(s) | 274, 544, 591 |
| PspPI | GGNCC | 5 cut(s) | 37, 120, 742, 1729, 1955 |
| PspPPI | RGGWCCY | 1 cut(s) | 37 |
| PstNI | CAGNNNCTG | 2 cut(s) | 592, 1844 |
| PsuI | RGATCY | 3 cut(s) | 158, 651, 1408 |
| PvuII | CAGCTG | 1 cut(s) | 994 |
| RsaI | GTAC | 9 cut(s) | 130, 294, 672, 936, 1186, 1418, 1780, 1787, 1894 |
| RsaNI | GTAC | 9 cut(s) | 129, 293, 671, 935, 1185, 1417, 1779, 1786, 1893 |
| SaqAI | TTAA | 8 cut(s) | 206, 468, 608, 840, 948, 1482, 1556, 1860 |
| SatI | GCNGC | 6 cut(s) | 1212, 1299, 1378, 1605, 1845, 1979 |
| Sau3AI | GATC | 9 cut(s) | 158, 337, 434, 552, 651, 1042, 1332, 1408, 1719 |
| Sau96I | GGNCC | 5 cut(s) | 37, 120, 742, 1729, 1955 |
| SchI | GAGTC | 4 cut(s) | 256, 1174, 1307, 1844 |
| ScrFI | CCNGG | 6 cut(s) | 42, 276, 414, 546, 593, 1548 |
| SduI | GDGCHC | 4 cut(s) | 99, 319, 813, 1022 |
| SfaNI | GCATC | 5 cut(s) | 530, 1198, 1281, 1518, 1622 |
| SfcI | CTRYAG | 1 cut(s) | 349 |
| Sfr274I | CTCGAG | 1 cut(s) | 1916 |
| SinI | GGWCC | 2 cut(s) | 37, 1955 |
| SlaI | CTCGAG | 1 cut(s) | 1916 |
| SmlI | CTYRAG | 1 cut(s) | 1916 |
| SmoI | CTYRAG | 1 cut(s) | 1916 |
| SsiI | CCGC | 3 cut(s) | 346, 1298, 1976 |
| SspMI | CTAG | 3 cut(s) | 132, 312, 1050 |
| StyD4I | CCNGG | 6 cut(s) | 40, 274, 412, 544, 591, 1546 |
| StyI | CCWWGG | 3 cut(s) | 904, 1412, 1935 |
| TaaI | ACNGT | 8 cut(s) | 115, 565, 647, 670, 1180, 1840, 1886, 1892 |
| TaiI | ACGT | 1 cut(s) | 1478 |
| TaqI | TCGA | 3 cut(s) | 779, 1038, 1917 |
| TatI | WGTACW | 3 cut(s) | 128, 1184, 1778 |
| TauI | GCSGC | 1 cut(s) | 1301 |
| TfiI | GAWTC | 3 cut(s) | 526, 683, 1127 |
| Tru1I | TTAA | 8 cut(s) | 206, 468, 608, 840, 948, 1482, 1556, 1860 |
| Tru9I | TTAA | 8 cut(s) | 206, 468, 608, 840, 948, 1482, 1556, 1860 |
| TscAI | CASTG | 1 cut(s) | 155 |
| TseFI | GTSAC | 4 cut(s) | 629, 689, 1460, 1669 |
| TseI | GCWGC | 5 cut(s) | 1211, 1377, 1604, 1844, 1978 |
| Tsp45I | GTSAC | 4 cut(s) | 629, 689, 1460, 1669 |
| TspGWI | ACGGA | 1 cut(s) | 565 |
| TspRI | CASTG | 1 cut(s) | 155 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1075, 1941 |
| VpaK11BI | GGWCC | 2 cut(s) | 37, 1955 |
| VspI | ATTAAT | 1 cut(s) | 1556 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 684 |
| XapI | RAATTY | 6 cut(s) | 228, 424, 637, 1275, 1452, 1646 |
| XceI | RCATGY | 3 cut(s) | 323, 737, 838 |
| XhoI | CTCGAG | 1 cut(s) | 1916 |
| XmiI | GTMKAC | 1 cut(s) | 1543 |
| XspI | CTAG | 3 cut(s) | 132, 312, 1050 |