BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 818 |
| Acc16I | TGCGCA | 1 cut(s) | 1939 |
| Acc65I | GGTACC | 2 cut(s) | 1791, 1916 |
| AccB1I | GGYRCC | 2 cut(s) | 1791, 1916 |
| AccI | GTMKAC | 3 cut(s) | 109, 973, 1161 |
| AciI | CCGC | 4 cut(s) | 17, 132, 373, 593 |
| AclWI | GGATC | 2 cut(s) | 142, 1430 |
| AcsI | RAATTY | 7 cut(s) | 463, 685, 960, 1010, 1256, 1276, 1830 |
| AdeI | CACNNNGTG | 2 cut(s) | 944, 1170 |
| AfaI | GTAC | 9 cut(s) | 142, 626, 888, 1002, 1121, 1305, 1715, 1793, 1918 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 592 |
| AflIII | ACRYGT | 1 cut(s) | 92 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 841 |
| AjnI | CCWGG | 2 cut(s) | 571, 1912 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 542, 574, 1492, 1524 |
| AluBI | AGCT | 7 cut(s) | 484, 1025, 1215, 1225, 1294, 1315, 1565 |
| AluI | AGCT | 7 cut(s) | 484, 1025, 1215, 1225, 1294, 1315, 1565 |
| Alw21I | GWGCWC | 1 cut(s) | 622 |
| Alw26I | GTCTC | 2 cut(s) | 1269, 1938 |
| AlwI | GGATC | 2 cut(s) | 142, 1430 |
| ApeKI | GCWGC | 4 cut(s) | 221, 896, 1312, 1424 |
| ApoI | RAATTY | 7 cut(s) | 463, 685, 960, 1010, 1256, 1276, 1830 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 142, 174, 1247, 1279 |
| Asp718I | GGTACC | 2 cut(s) | 1791, 1916 |
| AspA2I | CCTAGG | 1 cut(s) | 1787 |
| AspLEI | GCGC | 2 cut(s) | 1496, 1940 |
| AsuC2I | CCSGG | 1 cut(s) | 1617 |
| AsuHPI | GGTGA | 2 cut(s) | 31, 1610 |
| AvrII | CCTAGG | 1 cut(s) | 1787 |
| BaeGI | GKGCMC | 1 cut(s) | 1175 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 398, 431, 1900, 1933 |
| BanI | GGYRCC | 2 cut(s) | 1791, 1916 |
| BauI | CACGAG | 1 cut(s) | 1941 |
| BbsI | GAAGAC | 1 cut(s) | 723 |
| Bbv12I | GWGCWC | 1 cut(s) | 622 |
| BbvI | GCAGC | 4 cut(s) | 233, 908, 1324, 1436 |
| BccI | CCATC | 6 cut(s) | 608, 1183, 1595, 1682, 1804, 1846 |
| BceAI | ACGGC | 1 cut(s) | 284 |
| BciT130I | CCWGG | 2 cut(s) | 573, 1914 |
| BciVI | GTATCC | 2 cut(s) | 426, 1944 |
| BclI | TGATCA | 2 cut(s) | 364, 1573 |
| BcnI | CCSGG | 1 cut(s) | 1617 |
| BcoDI | GTCTC | 2 cut(s) | 1269, 1938 |
| BfaI | CTAG | 4 cut(s) | 932, 1064, 1788, 1964 |
| BfoI | RGCGCY | 1 cut(s) | 1497 |
| BfuI | GTATCC | 2 cut(s) | 426, 1944 |
| BglII | AGATCT | 1 cut(s) | 191 |
| BisI | GCNGC | 4 cut(s) | 222, 897, 1313, 1425 |
| BlnI | CCTAGG | 1 cut(s) | 1787 |
| BlpI | GCTNAGC | 1 cut(s) | 1561 |
| BlsI | GCNGC | 4 cut(s) | 223, 898, 1314, 1426 |
| BmcAI | AGTACT | 2 cut(s) | 626, 1715 |
| Bme1390I | CCNGG | 3 cut(s) | 573, 1617, 1914 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 841 |
| BmiI | GGNNCC | 3 cut(s) | 1725, 1793, 1918 |
| BmrFI | CCNGG | 3 cut(s) | 573, 1617, 1914 |
| BmsI | GCATC | 1 cut(s) | 916 |
| BpiI | GAAGAC | 1 cut(s) | 723 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1290 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1561 |
| BpuMI | CCSGG | 1 cut(s) | 1617 |
| BsaBI | GATNNNNATC | 1 cut(s) | 43 |
| BsaJI | CCNNGG | 4 cut(s) | 420, 1439, 1787, 1912 |
| BsaWI | WCCGGW | 1 cut(s) | 1871 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 592 |
| Bse1I | ACTGG | 2 cut(s) | 144, 1952 |
| Bse3DI | GCAATG | 1 cut(s) | 1825 |
| Bse8I | GATNNNNATC | 1 cut(s) | 43 |
| BseBI | CCWGG | 2 cut(s) | 573, 1914 |
| BseDI | CCNNGG | 4 cut(s) | 420, 1439, 1787, 1912 |
| BseGI | GGATG | 5 cut(s) | 32, 286, 442, 619, 931 |
| BseJI | GATNNNNATC | 1 cut(s) | 43 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 592 |
| BseMI | GCAATG | 1 cut(s) | 1825 |
| BseMII | CTCAG | 6 cut(s) | 142, 635, 1281, 1503, 1637, 1872 |
| BseNI | ACTGG | 2 cut(s) | 144, 1952 |
| BseRI | GAGGAG | 1 cut(s) | 1736 |
| BseSI | GKGCMC | 1 cut(s) | 1175 |
| BseXI | GCAGC | 4 cut(s) | 233, 908, 1324, 1436 |
| BsgI | GTGCAG | 1 cut(s) | 915 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1891 |
| BshNI | GGYRCC | 2 cut(s) | 1791, 1916 |
| BsiEI | CGRYCG | 1 cut(s) | 1891 |
| BsiHKAI | GWGCWC | 1 cut(s) | 622 |
| BsiSI | CCGG | 3 cut(s) | 1504, 1617, 1872 |
| BslFI | GGGAC | 3 cut(s) | 163, 259, 829 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 592 |
| BsmAI | GTCTC | 2 cut(s) | 1269, 1938 |
| BsmFI | GGGAC | 3 cut(s) | 163, 259, 829 |
| BsmI | GAATGC | 3 cut(s) | 724, 1862, 1887 |
| Bsp1286I | GDGCHC | 2 cut(s) | 622, 1175 |
| Bsp143I | GATC | 7 cut(s) | 134, 191, 364, 385, 1039, 1435, 1573 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1561 |
| BspACI | CCGC | 4 cut(s) | 17, 132, 373, 593 |
| BspCNI | CTCAG | 6 cut(s) | 141, 634, 1282, 1504, 1638, 1871 |
| BspHI | TCATGA | 1 cut(s) | 738 |
| BspLI | GGNNCC | 3 cut(s) | 1725, 1793, 1918 |
| BspPI | GGATC | 2 cut(s) | 142, 1430 |
| BspT107I | GGYRCC | 2 cut(s) | 1791, 1916 |
| BsrDI | GCAATG | 1 cut(s) | 1825 |
| BsrI | ACTGG | 2 cut(s) | 144, 1952 |
| BssECI | CCNNGG | 4 cut(s) | 420, 1439, 1787, 1912 |
| BssMI | GATC | 7 cut(s) | 134, 191, 364, 385, 1039, 1435, 1573 |
| BssNAI | GTATAC | 1 cut(s) | 974 |
| BssSI | CACGAG | 1 cut(s) | 1941 |
| BssT1I | CCWWGG | 2 cut(s) | 420, 1787 |
| Bst1107I | GTATAC | 1 cut(s) | 974 |
| Bst2BI | CACGAG | 1 cut(s) | 1941 |
| Bst2UI | CCWGG | 2 cut(s) | 573, 1914 |
| Bst4CI | ACNGT | 6 cut(s) | 515, 770, 978, 1539, 1892, 1921 |
| BstC8I | GCNNGC | 4 cut(s) | 996, 1146, 1728, 1816 |
| BstDEI | CTNAG | 8 cut(s) | 128, 587, 621, 1290, 1512, 1561, 1646, 1858 |
| BstEII | GGTNACC | 1 cut(s) | 1237 |
| BstF5I | GGATG | 5 cut(s) | 32, 286, 442, 619, 931 |
| BstH2I | RGCGCY | 1 cut(s) | 1497 |
| BstHHI | GCGC | 2 cut(s) | 1496, 1940 |
| BstKTI | GATC | 7 cut(s) | 137, 194, 367, 388, 1042, 1438, 1576 |
| BstMAI | GTCTC | 2 cut(s) | 1269, 1938 |
| BstMBI | GATC | 7 cut(s) | 134, 191, 364, 385, 1039, 1435, 1573 |
| BstMCI | CGRYCG | 1 cut(s) | 1891 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 935, 1004, 1500 |
| BstNI | CCWGG | 2 cut(s) | 573, 1914 |
| BstNSI | RCATGY | 2 cut(s) | 96, 1148 |
| BstPI | GGTNACC | 1 cut(s) | 1237 |
| BstSCI | CCNGG | 3 cut(s) | 571, 1615, 1912 |
| BstSLI | GKGCMC | 1 cut(s) | 1175 |
| BstV1I | GCAGC | 4 cut(s) | 233, 908, 1324, 1436 |
| BstV2I | GAAGAC | 1 cut(s) | 723 |
| BstX2I | RGATCY | 2 cut(s) | 191, 1435 |
| BstYI | RGATCY | 2 cut(s) | 191, 1435 |
| BstZ17I | GTATAC | 1 cut(s) | 974 |
| BsuI | GTATCC | 2 cut(s) | 426, 1944 |
| BtgZI | GCGATG | 1 cut(s) | 1865 |
| BtsCI | GGATG | 5 cut(s) | 32, 286, 442, 619, 931 |
| BtsI | GCAGTG | 2 cut(s) | 1085, 1495 |
| BtsIMutI | CAGTG | 4 cut(s) | 151, 1085, 1495, 1535 |
| Cac8I | GCNNGC | 4 cut(s) | 996, 1146, 1728, 1816 |
| CciI | TCATGA | 1 cut(s) | 738 |
| CfoI | GCGC | 2 cut(s) | 1496, 1940 |
| Csp6I | GTAC | 9 cut(s) | 141, 625, 887, 1001, 1120, 1304, 1714, 1792, 1917 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1061, 1096 |
| CviAII | CATG | 7 cut(s) | 93, 410, 739, 1145, 1742, 1781, 1906 |
| CviQI | GTAC | 9 cut(s) | 141, 625, 887, 1001, 1120, 1304, 1714, 1792, 1917 |
| DdeI | CTNAG | 8 cut(s) | 128, 587, 621, 1290, 1512, 1561, 1646, 1858 |
| DpnI | GATC | 7 cut(s) | 136, 193, 366, 387, 1041, 1437, 1575 |
| DpnII | GATC | 7 cut(s) | 134, 191, 364, 385, 1039, 1435, 1573 |
| DraI | TTTAAA | 1 cut(s) | 684 |
| DraIII | CACNNNGTG | 2 cut(s) | 944, 1170 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 818 |
| DriI | GACNNNNNGTC | 1 cut(s) | 841 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 818 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 841 |
| EciI | GGCGGA | 1 cut(s) | 388 |
| Eco130I | CCWWGG | 2 cut(s) | 420, 1787 |
| Eco91I | GGTNACC | 1 cut(s) | 1237 |
| EcoO65I | GGTNACC | 1 cut(s) | 1237 |
| EcoRI | GAATTC | 1 cut(s) | 1830 |
| EcoRII | CCWGG | 2 cut(s) | 571, 1912 |
| EcoT14I | CCWWGG | 2 cut(s) | 420, 1787 |
| ErhI | CCWWGG | 2 cut(s) | 420, 1787 |
| FaeI | CATG | 7 cut(s) | 96, 413, 742, 1148, 1745, 1784, 1909 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1040, 1072 |
| FaqI | GGGAC | 3 cut(s) | 163, 259, 829 |
| FatI | CATG | 7 cut(s) | 92, 409, 738, 1144, 1741, 1780, 1905 |
| FauNDI | CATATG | 1 cut(s) | 1093 |
| FbaI | TGATCA | 2 cut(s) | 364, 1573 |
| FblI | GTMKAC | 3 cut(s) | 109, 973, 1161 |
| Fnu4HI | GCNGC | 4 cut(s) | 222, 897, 1313, 1425 |
| FokI | GGATG | 5 cut(s) | 19, 293, 449, 626, 938 |
| Fsp4HI | GCNGC | 4 cut(s) | 222, 897, 1313, 1425 |
| FspAI | RTGCGCAY | 1 cut(s) | 1939 |
| FspBI | CTAG | 4 cut(s) | 932, 1064, 1788, 1964 |
| FspI | TGCGCA | 1 cut(s) | 1939 |
| GlaI | GCGC | 2 cut(s) | 1495, 1939 |
| GluI | GCNGC | 4 cut(s) | 222, 897, 1313, 1425 |
| HaeII | RGCGCY | 1 cut(s) | 1497 |
| HapII | CCGG | 3 cut(s) | 1504, 1617, 1872 |
| HhaI | GCGC | 2 cut(s) | 1496, 1940 |
| Hin1II | CATG | 7 cut(s) | 96, 413, 742, 1148, 1745, 1784, 1909 |
| Hin6I | GCGC | 2 cut(s) | 1494, 1938 |
| HinP1I | GCGC | 2 cut(s) | 1494, 1938 |
| HpaII | CCGG | 3 cut(s) | 1504, 1617, 1872 |
| HphI | GGTGA | 2 cut(s) | 31, 1610 |
| Hpy166II | GTNNAC | 6 cut(s) | 22, 110, 974, 1162, 1306, 1961 |
| Hpy188I | TCNGA | 9 cut(s) | 186, 496, 709, 730, 1044, 1180, 1513, 1624, 1702 |
| Hpy188III | TCNNGA | 6 cut(s) | 36, 739, 923, 1289, 1337, 1447 |
| Hpy8I | GTNNAC | 6 cut(s) | 22, 110, 974, 1162, 1306, 1961 |
| HpyAV | CCTTC | 2 cut(s) | 236, 1741 |
| HpyCH4III | ACNGT | 6 cut(s) | 515, 770, 978, 1539, 1892, 1921 |
| HpyCH4IV | ACGT | 2 cut(s) | 889, 1155 |
| HpyCH4V | TGCA | 9 cut(s) | 221, 896, 1078, 1144, 1148, 1274, 1329, 1424, 1745 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 935, 1004, 1500 |
| HpyF3I | CTNAG | 8 cut(s) | 128, 587, 621, 1290, 1512, 1561, 1646, 1858 |
| HpySE526I | ACGT | 2 cut(s) | 889, 1155 |
| Hsp92II | CATG | 7 cut(s) | 96, 413, 742, 1148, 1745, 1784, 1909 |
| HspAI | GCGC | 2 cut(s) | 1494, 1938 |
| KpnI | GGTACC | 2 cut(s) | 1795, 1920 |
| Ksp22I | TGATCA | 2 cut(s) | 364, 1573 |
| Kzo9I | GATC | 7 cut(s) | 134, 191, 364, 385, 1039, 1435, 1573 |
| LmnI | GCTCC | 3 cut(s) | 1501, 1723, 1789 |
| Lsp1109I | GCAGC | 4 cut(s) | 233, 908, 1324, 1436 |
| LweI | GCATC | 1 cut(s) | 916 |
| MaeI | CTAG | 4 cut(s) | 932, 1064, 1788, 1964 |
| MaeII | ACGT | 2 cut(s) | 889, 1155 |
| MaeIII | GTNAC | 3 cut(s) | 487, 855, 1237 |
| MalI | GATC | 7 cut(s) | 136, 193, 366, 387, 1041, 1437, 1575 |
| MboI | GATC | 7 cut(s) | 134, 191, 364, 385, 1039, 1435, 1573 |
| MboII | GAAGA | 7 cut(s) | 201, 685, 688, 696, 728, 1397, 1890 |
| MflI | RGATCY | 2 cut(s) | 191, 1435 |
| MhlI | GDGCHC | 2 cut(s) | 622, 1175 |
| MlyI | GAGTC | 3 cut(s) | 665, 1640, 1850 |
| MmeI | TCCRAC | 3 cut(s) | 421, 540, 1292 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1149, 1933 |
| MspA1I | CMGCKG | 2 cut(s) | 132, 1315 |
| MspI | CCGG | 3 cut(s) | 1504, 1617, 1872 |
| MspR9I | CCNGG | 3 cut(s) | 573, 1617, 1914 |
| Mva1269I | GAATGC | 3 cut(s) | 724, 1862, 1887 |
| MvaI | CCWGG | 2 cut(s) | 573, 1914 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 935, 1004, 1500 |
| NciI | CCSGG | 1 cut(s) | 1617 |
| NdeI | CATATG | 1 cut(s) | 1093 |
| NdeII | GATC | 7 cut(s) | 134, 191, 364, 385, 1039, 1435, 1573 |
| NlaIII | CATG | 7 cut(s) | 96, 413, 742, 1148, 1745, 1784, 1909 |
| NlaIV | GGNNCC | 3 cut(s) | 1725, 1793, 1918 |
| NsbI | TGCGCA | 1 cut(s) | 1939 |
| NspI | RCATGY | 2 cut(s) | 96, 1148 |
| PaeI | GCATGC | 1 cut(s) | 1148 |
| PagI | TCATGA | 1 cut(s) | 738 |
| PciI | ACATGT | 1 cut(s) | 92 |
| PctI | GAATGC | 3 cut(s) | 724, 1862, 1887 |
| PfeI | GAWTC | 8 cut(s) | 166, 262, 444, 579, 701, 828, 1053, 1333 |
| PflFI | GACNNNGTC | 1 cut(s) | 1157 |
| PkrI | GCNGC | 4 cut(s) | 223, 898, 1314, 1426 |
| PleI | GAGTC | 3 cut(s) | 664, 1639, 1850 |
| PpsI | GAGTC | 3 cut(s) | 664, 1639, 1850 |
| PscI | ACATGT | 1 cut(s) | 92 |
| Psp6I | CCWGG | 2 cut(s) | 571, 1912 |
| PspEI | GGTNACC | 1 cut(s) | 1237 |
| PspGI | CCWGG | 2 cut(s) | 571, 1912 |
| PspN4I | GGNNCC | 3 cut(s) | 1725, 1793, 1918 |
| PsuI | RGATCY | 2 cut(s) | 191, 1435 |
| PsyI | GACNNNGTC | 1 cut(s) | 1157 |
| PvuII | CAGCTG | 1 cut(s) | 1315 |
| RsaI | GTAC | 9 cut(s) | 142, 626, 888, 1002, 1121, 1305, 1715, 1793, 1918 |
| RsaNI | GTAC | 9 cut(s) | 141, 625, 887, 1001, 1120, 1304, 1714, 1792, 1917 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1149, 1933 |
| SatI | GCNGC | 4 cut(s) | 222, 897, 1313, 1425 |
| Sau3AI | GATC | 7 cut(s) | 134, 191, 364, 385, 1039, 1435, 1573 |
| ScaI | AGTACT | 2 cut(s) | 626, 1715 |
| SchI | GAGTC | 3 cut(s) | 665, 1640, 1850 |
| ScrFI | CCNGG | 3 cut(s) | 573, 1617, 1914 |
| SduI | GDGCHC | 2 cut(s) | 622, 1175 |
| SfaNI | GCATC | 1 cut(s) | 916 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1149, 1933 |
| SphI | GCATGC | 1 cut(s) | 1148 |
| SsiI | CCGC | 4 cut(s) | 17, 132, 373, 593 |
| SspI | AATATT | 2 cut(s) | 304, 1391 |
| SspMI | CTAG | 4 cut(s) | 932, 1064, 1788, 1964 |
| StyD4I | CCNGG | 3 cut(s) | 571, 1615, 1912 |
| StyI | CCWWGG | 2 cut(s) | 420, 1787 |
| TaaI | ACNGT | 6 cut(s) | 515, 770, 978, 1539, 1892, 1921 |
| TaiI | ACGT | 2 cut(s) | 892, 1158 |
| TaqI | TCGA | 3 cut(s) | 753, 964, 1887 |
| TatI | WGTACW | 5 cut(s) | 624, 1000, 1119, 1303, 1713 |
| TfiI | GAWTC | 8 cut(s) | 166, 262, 444, 579, 701, 828, 1053, 1333 |
| TscAI | CASTG | 4 cut(s) | 151, 1085, 1495, 1542 |
| TseI | GCWGC | 4 cut(s) | 221, 896, 1312, 1424 |
| TspDTI | ATGAA | 4 cut(s) | 297, 1560, 1769, 1922 |
| TspRI | CASTG | 4 cut(s) | 151, 1085, 1495, 1542 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1157 |
| XapI | RAATTY | 7 cut(s) | 463, 685, 960, 1010, 1256, 1276, 1830 |
| XceI | RCATGY | 2 cut(s) | 96, 1148 |
| XmaJI | CCTAGG | 1 cut(s) | 1787 |
| XmiI | GTMKAC | 3 cut(s) | 109, 973, 1161 |
| XspI | CTAG | 4 cut(s) | 932, 1064, 1788, 1964 |
| ZrmI | AGTACT | 2 cut(s) | 626, 1715 |