RNA polymerase I-specific transcription initiation factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 194 |
| Acc36I | ACCTGC | 1 cut(s) | 194 |
| AciI | CCGC | 1 cut(s) | 22 |
| AclWI | GGATC | 1 cut(s) | 705 |
| AcoI | YGGCCR | 2 cut(s) | 19, 57 |
| AcsI | RAATTY | 2 cut(s) | 4, 442 |
| AcuI | CTGAAG | 4 cut(s) | 348, 677, 996, 1026 |
| AfaI | GTAC | 2 cut(s) | 147, 942 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 471, 758 |
| AflIII | ACRYGT | 1 cut(s) | 574 |
| AhlI | ACTAGT | 1 cut(s) | 533 |
| AluBI | AGCT | 3 cut(s) | 55, 413, 980 |
| AluI | AGCT | 3 cut(s) | 55, 413, 980 |
| Alw26I | GTCTC | 4 cut(s) | 25, 123, 316, 620 |
| AlwI | GGATC | 1 cut(s) | 705 |
| AoxI | GGCC | 3 cut(s) | 19, 57, 229 |
| ApeKI | GCWGC | 1 cut(s) | 24 |
| ApoI | RAATTY | 2 cut(s) | 4, 442 |
| AspS9I | GGNCC | 1 cut(s) | 634 |
| AsuHPI | GGTGA | 5 cut(s) | 502, 524, 530, 812, 818 |
| AvaII | GGWCC | 1 cut(s) | 634 |
| BalI | TGGCCA | 1 cut(s) | 59 |
| BauI | CACGAG | 1 cut(s) | 120 |
| BbvI | GCAGC | 1 cut(s) | 36 |
| BccI | CCATC | 3 cut(s) | 266, 302, 797 |
| BciVI | GTATCC | 1 cut(s) | 601 |
| BclI | TGATCA | 1 cut(s) | 502 |
| BcoDI | GTCTC | 4 cut(s) | 25, 123, 316, 620 |
| BcuI | ACTAGT | 1 cut(s) | 533 |
| BfaI | CTAG | 3 cut(s) | 534, 659, 981 |
| BfmI | CTRYAG | 1 cut(s) | 133 |
| BfuAI | ACCTGC | 1 cut(s) | 194 |
| BfuI | GTATCC | 1 cut(s) | 601 |
| BglII | AGATCT | 2 cut(s) | 313, 1051 |
| BisI | GCNGC | 2 cut(s) | 22, 25 |
| BlsI | GCNGC | 2 cut(s) | 23, 26 |
| Bme18I | GGWCC | 1 cut(s) | 634 |
| BmgT120I | GGNCC | 1 cut(s) | 634 |
| BmsI | GCATC | 1 cut(s) | 511 |
| BpuEI | CTTGAG | 1 cut(s) | 985 |
| BsaBI | GATNNNNATC | 2 cut(s) | 243, 312 |
| BsaI | GGTCTC | 2 cut(s) | 25, 316 |
| BsaJI | CCNNGG | 1 cut(s) | 724 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 249, 279 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 471, 758 |
| Bse1I | ACTGG | 2 cut(s) | 438, 1024 |
| Bse3DI | GCAATG | 1 cut(s) | 446 |
| Bse8I | GATNNNNATC | 2 cut(s) | 243, 312 |
| BseDI | CCNNGG | 1 cut(s) | 724 |
| BseGI | GGATG | 2 cut(s) | 277, 562 |
| BseJI | GATNNNNATC | 2 cut(s) | 243, 312 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 471, 758 |
| BseMI | GCAATG | 1 cut(s) | 446 |
| BseMII | CTCAG | 2 cut(s) | 23, 652 |
| BseNI | ACTGG | 2 cut(s) | 438, 1024 |
| BseRI | GAGGAG | 2 cut(s) | 575, 915 |
| BseXI | GCAGC | 1 cut(s) | 36 |
| BshFI | GGCC | 3 cut(s) | 21, 59, 231 |
| BslFI | GGGAC | 1 cut(s) | 444 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 471, 758 |
| BsmAI | GTCTC | 4 cut(s) | 25, 123, 316, 620 |
| BsmFI | GGGAC | 1 cut(s) | 444 |
| BsmI | GAATGC | 1 cut(s) | 205 |
| BsnI | GGCC | 3 cut(s) | 21, 59, 231 |
| Bso31I | GGTCTC | 2 cut(s) | 25, 316 |
| Bsp1407I | TGTACA | 1 cut(s) | 145 |
| Bsp143I | GATC | 5 cut(s) | 244, 313, 502, 697, 1051 |
| BspACI | CCGC | 1 cut(s) | 22 |
| BspANI | GGCC | 3 cut(s) | 21, 59, 231 |
| BspCNI | CTCAG | 2 cut(s) | 22, 651 |
| BspMI | ACCTGC | 1 cut(s) | 194 |
| BspPI | GGATC | 1 cut(s) | 705 |
| BspTNI | GGTCTC | 2 cut(s) | 25, 316 |
| BsrDI | GCAATG | 1 cut(s) | 446 |
| BsrGI | TGTACA | 1 cut(s) | 145 |
| BsrI | ACTGG | 2 cut(s) | 438, 1024 |
| BssECI | CCNNGG | 1 cut(s) | 724 |
| BssMI | GATC | 5 cut(s) | 244, 313, 502, 697, 1051 |
| BssSI | CACGAG | 1 cut(s) | 120 |
| Bst2BI | CACGAG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 5 cut(s) | 137, 512, 761, 848, 863 |
| Bst6I | CTCTTC | 3 cut(s) | 38, 279, 696 |
| BstAUI | TGTACA | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 1 cut(s) | 57 |
| BstDEI | CTNAG | 3 cut(s) | 9, 638, 957 |
| BstDSI | CCRYGG | 1 cut(s) | 724 |
| BstF5I | GGATG | 2 cut(s) | 277, 562 |
| BstKTI | GATC | 5 cut(s) | 247, 316, 505, 700, 1054 |
| BstMAI | GTCTC | 4 cut(s) | 25, 123, 316, 620 |
| BstMBI | GATC | 5 cut(s) | 244, 313, 502, 697, 1051 |
| BstNSI | RCATGY | 1 cut(s) | 578 |
| BstSFI | CTRYAG | 1 cut(s) | 133 |
| BstV1I | GCAGC | 1 cut(s) | 36 |
| BstX2I | RGATCY | 2 cut(s) | 313, 1051 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 548 |
| BstYI | RGATCY | 2 cut(s) | 313, 1051 |
| BsuI | GTATCC | 1 cut(s) | 601 |
| BsuRI | GGCC | 3 cut(s) | 21, 59, 231 |
| BtgI | CCRYGG | 1 cut(s) | 724 |
| BtsCI | GGATG | 2 cut(s) | 277, 562 |
| BtsI | GCAGTG | 1 cut(s) | 432 |
| BtsIMutI | CAGTG | 3 cut(s) | 142, 432, 868 |
| BveI | ACCTGC | 1 cut(s) | 194 |
| Cac8I | GCNNGC | 1 cut(s) | 57 |
| Cfr13I | GGNCC | 1 cut(s) | 634 |
| Csp6I | GTAC | 2 cut(s) | 146, 941 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 201, 236 |
| CviAII | CATG | 6 cut(s) | 170, 467, 542, 575, 599, 821 |
| CviQI | GTAC | 2 cut(s) | 146, 941 |
| DdeI | CTNAG | 3 cut(s) | 9, 638, 957 |
| DpnI | GATC | 5 cut(s) | 246, 315, 504, 699, 1053 |
| DpnII | GATC | 5 cut(s) | 244, 313, 502, 697, 1051 |
| EaeI | YGGCCR | 2 cut(s) | 19, 57 |
| Eam1104I | CTCTTC | 3 cut(s) | 38, 279, 696 |
| EarI | CTCTTC | 3 cut(s) | 38, 279, 696 |
| Eco147I | AGGCCT | 1 cut(s) | 231 |
| Eco31I | GGTCTC | 2 cut(s) | 25, 316 |
| Eco32I | GATATC | 1 cut(s) | 769 |
| Eco47I | GGWCC | 1 cut(s) | 634 |
| Eco57I | CTGAAG | 4 cut(s) | 348, 677, 996, 1026 |
| EcoO109I | RGGNCCY | 1 cut(s) | 634 |
| EcoRI | GAATTC | 2 cut(s) | 4, 442 |
| EcoRV | GATATC | 1 cut(s) | 769 |
| FaeI | CATG | 6 cut(s) | 173, 470, 545, 578, 602, 824 |
| FaqI | GGGAC | 1 cut(s) | 444 |
| FatI | CATG | 6 cut(s) | 169, 466, 541, 574, 598, 820 |
| FbaI | TGATCA | 1 cut(s) | 502 |
| Fnu4HI | GCNGC | 2 cut(s) | 22, 25 |
| FokI | GGATG | 2 cut(s) | 284, 569 |
| Fsp4HI | GCNGC | 2 cut(s) | 22, 25 |
| FspBI | CTAG | 3 cut(s) | 534, 659, 981 |
| GluI | GCNGC | 2 cut(s) | 22, 25 |
| HaeIII | GGCC | 3 cut(s) | 21, 59, 231 |
| Hin1II | CATG | 6 cut(s) | 173, 470, 545, 578, 602, 824 |
| HinfI | GANTC | 5 cut(s) | 620, 686, 776, 791, 947 |
| HphI | GGTGA | 5 cut(s) | 502, 524, 530, 812, 818 |
| Hpy166II | GTNNAC | 3 cut(s) | 146, 757, 818 |
| Hpy188I | TCNGA | 7 cut(s) | 66, 397, 502, 625, 646, 976, 1051 |
| Hpy188III | TCNNGA | 5 cut(s) | 122, 506, 584, 695, 780 |
| Hpy8I | GTNNAC | 3 cut(s) | 146, 757, 818 |
| HpyAV | CCTTC | 3 cut(s) | 221, 323, 449 |
| HpyCH4III | ACNGT | 5 cut(s) | 137, 512, 761, 848, 863 |
| HpyCH4V | TGCA | 2 cut(s) | 203, 451 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 638, 957 |
| Hsp92II | CATG | 6 cut(s) | 173, 470, 545, 578, 602, 824 |
| Ksp22I | TGATCA | 1 cut(s) | 502 |
| Kzo9I | GATC | 5 cut(s) | 244, 313, 502, 697, 1051 |
| LmnI | GCTCC | 1 cut(s) | 562 |
| Lsp1109I | GCAGC | 1 cut(s) | 36 |
| LweI | GCATC | 1 cut(s) | 511 |
| MaeI | CTAG | 3 cut(s) | 534, 659, 981 |
| MaeIII | GTNAC | 5 cut(s) | 490, 536, 761, 784, 1015 |
| MalI | GATC | 5 cut(s) | 246, 315, 504, 699, 1053 |
| MboI | GATC | 5 cut(s) | 244, 313, 502, 697, 1051 |
| MflI | RGATCY | 2 cut(s) | 313, 1051 |
| MlsI | TGGCCA | 1 cut(s) | 59 |
| MluCI | AATT | 7 cut(s) | 4, 213, 356, 391, 442, 703, 810 |
| MluNI | TGGCCA | 1 cut(s) | 59 |
| MlyI | GAGTC | 1 cut(s) | 629 |
| MmeI | TCCRAC | 1 cut(s) | 529 |
| MnlI | CCTC | 9 cut(s) | 39, 148, 415, 547, 553, 647, 893, 1009, 1028 |
| Mox20I | TGGCCA | 1 cut(s) | 59 |
| MscI | TGGCCA | 1 cut(s) | 59 |
| MseI | TTAA | 1 cut(s) | 579 |
| Msp20I | TGGCCA | 1 cut(s) | 59 |
| Mva1269I | GAATGC | 1 cut(s) | 205 |
| NdeII | GATC | 5 cut(s) | 244, 313, 502, 697, 1051 |
| NlaIII | CATG | 6 cut(s) | 173, 470, 545, 578, 602, 824 |
| NmuCI | GTSAC | 4 cut(s) | 490, 536, 784, 1015 |
| NspI | RCATGY | 1 cut(s) | 578 |
| PaqCI | CACCTGC | 1 cut(s) | 194 |
| PceI | AGGCCT | 1 cut(s) | 231 |
| PciI | ACATGT | 1 cut(s) | 574 |
| PctI | GAATGC | 1 cut(s) | 205 |
| PfeI | GAWTC | 4 cut(s) | 686, 776, 791, 947 |
| PflFI | GACNNNGTC | 1 cut(s) | 496 |
| PkrI | GCNGC | 2 cut(s) | 23, 26 |
| PleI | GAGTC | 1 cut(s) | 628 |
| PpsI | GAGTC | 1 cut(s) | 628 |
| PpuMI | RGGWCCY | 1 cut(s) | 634 |
| PscI | ACATGT | 1 cut(s) | 574 |
| Psp5II | RGGWCCY | 1 cut(s) | 634 |
| PspPI | GGNCC | 1 cut(s) | 634 |
| PspPPI | RGGWCCY | 1 cut(s) | 634 |
| PsuI | RGATCY | 2 cut(s) | 313, 1051 |
| PsyI | GACNNNGTC | 1 cut(s) | 496 |
| RsaI | GTAC | 2 cut(s) | 147, 942 |
| RsaNI | GTAC | 2 cut(s) | 146, 941 |
| SaqAI | TTAA | 1 cut(s) | 579 |
| SatI | GCNGC | 2 cut(s) | 22, 25 |
| Sau3AI | GATC | 5 cut(s) | 244, 313, 502, 697, 1051 |
| Sau96I | GGNCC | 1 cut(s) | 634 |
| SchI | GAGTC | 1 cut(s) | 629 |
| SfaNI | GCATC | 1 cut(s) | 511 |
| SfcI | CTRYAG | 1 cut(s) | 133 |
| SinI | GGWCC | 1 cut(s) | 634 |
| SmlI | CTYRAG | 1 cut(s) | 1000 |
| SmoI | CTYRAG | 1 cut(s) | 1000 |
| SpeI | ACTAGT | 1 cut(s) | 533 |
| Sse9I | AATT | 7 cut(s) | 4, 213, 356, 391, 442, 703, 810 |
| SseBI | AGGCCT | 1 cut(s) | 231 |
| SsiI | CCGC | 1 cut(s) | 22 |
| SspMI | CTAG | 3 cut(s) | 534, 659, 981 |
| StuI | AGGCCT | 1 cut(s) | 231 |
| TaaI | ACNGT | 5 cut(s) | 137, 512, 761, 848, 863 |
| TasI | AATT | 7 cut(s) | 4, 213, 356, 391, 442, 703, 810 |
| TatI | WGTACW | 1 cut(s) | 145 |
| TauI | GCSGC | 1 cut(s) | 24 |
| TfiI | GAWTC | 4 cut(s) | 686, 776, 791, 947 |
| Tru1I | TTAA | 1 cut(s) | 579 |
| Tru9I | TTAA | 1 cut(s) | 579 |
| TscAI | CASTG | 3 cut(s) | 142, 432, 868 |
| TseFI | GTSAC | 4 cut(s) | 490, 536, 784, 1015 |
| TseI | GCWGC | 1 cut(s) | 24 |
| Tsp45I | GTSAC | 4 cut(s) | 490, 536, 784, 1015 |
| TspDTI | ATGAA | 7 cut(s) | 17, 255, 435, 492, 558, 615, 837 |
| TspGWI | ACGGA | 1 cut(s) | 713 |
| TspRI | CASTG | 3 cut(s) | 142, 432, 868 |
| Tth111I | GACNNNGTC | 1 cut(s) | 496 |
| VpaK11BI | GGWCC | 1 cut(s) | 634 |
| XapI | RAATTY | 2 cut(s) | 4, 442 |
| XceI | RCATGY | 1 cut(s) | 578 |
| XspI | CTAG | 3 cut(s) | 534, 659, 981 |