BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 13 |
| AcsI | RAATTY | 1 cut(s) | 191 |
| AfaI | GTAC | 1 cut(s) | 66 |
| AgsI | TTSAA | 1 cut(s) | 340 |
| AluBI | AGCT | 1 cut(s) | 46 |
| AluI | AGCT | 1 cut(s) | 46 |
| AoxI | GGCC | 1 cut(s) | 287 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| ApoI | RAATTY | 1 cut(s) | 191 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 344 |
| AspS9I | GGNCC | 1 cut(s) | 287 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 332, 364 |
| BbvI | GCAGC | 1 cut(s) | 329 |
| BccI | CCATC | 2 cut(s) | 102, 163 |
| BceAI | ACGGC | 1 cut(s) | 397 |
| BfaI | CTAG | 2 cut(s) | 105, 143 |
| BfmI | CTRYAG | 1 cut(s) | 196 |
| BisI | GCNGC | 1 cut(s) | 318 |
| BlsI | GCNGC | 1 cut(s) | 319 |
| BmgT120I | GGNCC | 1 cut(s) | 287 |
| BpuEI | CTTGAG | 1 cut(s) | 351 |
| BsaWI | WCCGGW | 1 cut(s) | 67 |
| BseGI | GGATG | 3 cut(s) | 40, 174, 220 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseRI | GAGGAG | 1 cut(s) | 197 |
| BseXI | GCAGC | 1 cut(s) | 329 |
| BsgI | GTGCAG | 1 cut(s) | 350 |
| BshFI | GGCC | 1 cut(s) | 289 |
| BsiSI | CCGG | 1 cut(s) | 68 |
| BsnI | GGCC | 1 cut(s) | 289 |
| Bsp143I | GATC | 1 cut(s) | 370 |
| BspACI | CCGC | 1 cut(s) | 13 |
| BspANI | GGCC | 1 cut(s) | 289 |
| BspCNI | CTCAG | 1 cut(s) | 202 |
| BssMI | GATC | 1 cut(s) | 370 |
| Bst4CI | ACNGT | 1 cut(s) | 302 |
| Bst6I | CTCTTC | 2 cut(s) | 174, 246 |
| BstDEI | CTNAG | 1 cut(s) | 210 |
| BstF5I | GGATG | 3 cut(s) | 40, 174, 220 |
| BstKTI | GATC | 1 cut(s) | 373 |
| BstMBI | GATC | 1 cut(s) | 370 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 402 |
| BstSFI | CTRYAG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 1 cut(s) | 329 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 108 |
| BsuRI | GGCC | 1 cut(s) | 289 |
| BtsCI | GGATG | 3 cut(s) | 40, 174, 220 |
| BtsI | GCAGTG | 1 cut(s) | 391 |
| BtsIMutI | CAGTG | 3 cut(s) | 207, 307, 391 |
| Cfr13I | GGNCC | 1 cut(s) | 287 |
| Csp6I | GTAC | 1 cut(s) | 65 |
| CviJI | RGCY | 3 cut(s) | 46, 140, 289 |
| CviKI_1 | RGCY | 3 cut(s) | 46, 140, 289 |
| CviQI | GTAC | 1 cut(s) | 65 |
| DdeI | CTNAG | 1 cut(s) | 210 |
| DpnI | GATC | 1 cut(s) | 372 |
| DpnII | GATC | 1 cut(s) | 370 |
| Eam1104I | CTCTTC | 2 cut(s) | 174, 246 |
| EarI | CTCTTC | 2 cut(s) | 174, 246 |
| FaiI | YATR | 9 cut(s) | 9, 85, 87, 128, 198, 358, 360, 400, 402 |
| FauNDI | CATATG | 1 cut(s) | 400 |
| Fnu4HI | GCNGC | 1 cut(s) | 318 |
| FokI | GGATG | 3 cut(s) | 47, 181, 227 |
| Fsp4HI | GCNGC | 1 cut(s) | 318 |
| FspBI | CTAG | 2 cut(s) | 105, 143 |
| GluI | GCNGC | 1 cut(s) | 318 |
| HaeIII | GGCC | 1 cut(s) | 289 |
| HapII | CCGG | 1 cut(s) | 68 |
| HpaII | CCGG | 1 cut(s) | 68 |
| Hpy166II | GTNNAC | 1 cut(s) | 391 |
| Hpy188I | TCNGA | 1 cut(s) | 415 |
| Hpy188III | TCNNGA | 1 cut(s) | 368 |
| Hpy8I | GTNNAC | 1 cut(s) | 391 |
| HpyAV | CCTTC | 2 cut(s) | 148, 334 |
| HpyCH4III | ACNGT | 1 cut(s) | 302 |
| HpyCH4V | TGCA | 1 cut(s) | 331 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 402 |
| HpyF3I | CTNAG | 1 cut(s) | 210 |
| Kzo9I | GATC | 1 cut(s) | 370 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| LpnPI | CCDG | 1 cut(s) | 81 |
| Lsp1109I | GCAGC | 1 cut(s) | 329 |
| MaeI | CTAG | 2 cut(s) | 105, 143 |
| MaeIII | GTNAC | 1 cut(s) | 419 |
| MalI | GATC | 1 cut(s) | 372 |
| MboI | GATC | 1 cut(s) | 370 |
| MboII | GAAGA | 5 cut(s) | 185, 188, 191, 251, 263 |
| MluCI | AATT | 1 cut(s) | 191 |
| MmeI | TCCRAC | 2 cut(s) | 12, 125 |
| MnlI | CCTC | 8 cut(s) | 21, 159, 175, 205, 223, 247, 306, 375 |
| MroXI | GAANNNNTTC | 1 cut(s) | 344 |
| MseI | TTAA | 3 cut(s) | 42, 131, 149 |
| MspI | CCGG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 402 |
| NdeI | CATATG | 1 cut(s) | 400 |
| NdeII | GATC | 1 cut(s) | 370 |
| NmuCI | GTSAC | 1 cut(s) | 419 |
| PdmI | GAANNNNTTC | 1 cut(s) | 344 |
| PkrI | GCNGC | 1 cut(s) | 319 |
| PspPI | GGNCC | 1 cut(s) | 287 |
| RsaI | GTAC | 1 cut(s) | 66 |
| RsaNI | GTAC | 1 cut(s) | 65 |
| SaqAI | TTAA | 3 cut(s) | 42, 131, 149 |
| SatI | GCNGC | 1 cut(s) | 318 |
| Sau3AI | GATC | 1 cut(s) | 370 |
| Sau96I | GGNCC | 1 cut(s) | 287 |
| SetI | ASST | 4 cut(s) | 32, 48, 122, 345 |
| SfcI | CTRYAG | 1 cut(s) | 196 |
| SgeI | CNNG | 8 cut(s) | 39, 80, 104, 117, 155, 271, 277, 380 |
| SmlI | CTYRAG | 1 cut(s) | 366 |
| SmoI | CTYRAG | 1 cut(s) | 366 |
| Sse9I | AATT | 1 cut(s) | 191 |
| SsiI | CCGC | 1 cut(s) | 13 |
| SspMI | CTAG | 2 cut(s) | 105, 143 |
| TaaI | ACNGT | 1 cut(s) | 302 |
| TaqI | TCGA | 1 cut(s) | 26 |
| TasI | AATT | 1 cut(s) | 191 |
| Tru1I | TTAA | 3 cut(s) | 42, 131, 149 |
| Tru9I | TTAA | 3 cut(s) | 42, 131, 149 |
| TscAI | CASTG | 3 cut(s) | 214, 307, 398 |
| TseFI | GTSAC | 1 cut(s) | 419 |
| TseI | GCWGC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 419 |
| TspDTI | ATGAA | 3 cut(s) | 17, 252, 399 |
| TspRI | CASTG | 3 cut(s) | 214, 307, 398 |
| XapI | RAATTY | 1 cut(s) | 191 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 398 |
| XmnI | GAANNNNTTC | 1 cut(s) | 344 |
| XspI | CTAG | 2 cut(s) | 105, 143 |