BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 563 |
| AccII | CGCG | 1 cut(s) | 298 |
| AciI | CCGC | 3 cut(s) | 296, 298, 362 |
| AclWI | GGATC | 1 cut(s) | 224 |
| AcsI | RAATTY | 3 cut(s) | 332, 374, 386 |
| AfaI | GTAC | 2 cut(s) | 123, 221 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 443 |
| AflII | CTTAAG | 1 cut(s) | 542 |
| AgsI | TTSAA | 3 cut(s) | 257, 316, 707 |
| AleI | CACNNNNGTG | 1 cut(s) | 528 |
| AluBI | AGCT | 2 cut(s) | 182, 405 |
| AluI | AGCT | 2 cut(s) | 182, 405 |
| AlwI | GGATC | 1 cut(s) | 224 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 3 cut(s) | 332, 374, 386 |
| AseI | ATTAAT | 1 cut(s) | 654 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 198 |
| AspS9I | GGNCC | 1 cut(s) | 557 |
| AvaII | GGWCC | 1 cut(s) | 557 |
| BaeGI | GKGCMC | 1 cut(s) | 211 |
| BauI | CACGAG | 1 cut(s) | 528 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 1 cut(s) | 386 |
| BciVI | GTATCC | 1 cut(s) | 53 |
| BclI | TGATCA | 1 cut(s) | 733 |
| BfaI | CTAG | 2 cut(s) | 153, 438 |
| BfrI | CTTAAG | 1 cut(s) | 542 |
| BfuI | GTATCC | 1 cut(s) | 53 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlpI | GCTNAGC | 1 cut(s) | 183 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme18I | GGWCC | 1 cut(s) | 557 |
| BmgT120I | GGNCC | 1 cut(s) | 557 |
| BmiI | GGNNCC | 2 cut(s) | 159, 558 |
| BmsI | GCATC | 1 cut(s) | 160 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 183 |
| BpuEI | CTTGAG | 1 cut(s) | 629 |
| BsaJI | CCNNGG | 1 cut(s) | 296 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 443 |
| Bse3DI | GCAATG | 1 cut(s) | 222 |
| BseDI | CCNNGG | 1 cut(s) | 296 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 443 |
| BseMI | GCAATG | 1 cut(s) | 222 |
| BseMII | CTCAG | 2 cut(s) | 174, 207 |
| BseRI | GAGGAG | 1 cut(s) | 626 |
| BseSI | GKGCMC | 1 cut(s) | 211 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 298 |
| BslFI | GGGAC | 1 cut(s) | 570 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 443 |
| BsmFI | GGGAC | 1 cut(s) | 570 |
| Bsp1286I | GDGCHC | 1 cut(s) | 211 |
| Bsp143I | GATC | 3 cut(s) | 229, 673, 733 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 183 |
| BspACI | CCGC | 3 cut(s) | 296, 298, 362 |
| BspCNI | CTCAG | 2 cut(s) | 175, 208 |
| BspFNI | CGCG | 1 cut(s) | 298 |
| BspLI | GGNNCC | 2 cut(s) | 159, 558 |
| BspPI | GGATC | 1 cut(s) | 224 |
| BspTI | CTTAAG | 1 cut(s) | 542 |
| BsrDI | GCAATG | 1 cut(s) | 222 |
| BssECI | CCNNGG | 1 cut(s) | 296 |
| BssMI | GATC | 3 cut(s) | 229, 673, 733 |
| BssNAI | GTATAC | 1 cut(s) | 564 |
| BssSI | CACGAG | 1 cut(s) | 528 |
| Bst1107I | GTATAC | 1 cut(s) | 564 |
| Bst2BI | CACGAG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 2 cut(s) | 561, 568 |
| BstAFI | CTTAAG | 1 cut(s) | 542 |
| BstDEI | CTNAG | 2 cut(s) | 183, 216 |
| BstDSI | CCRYGG | 1 cut(s) | 296 |
| BstFNI | CGCG | 1 cut(s) | 298 |
| BstKTI | GATC | 3 cut(s) | 232, 676, 736 |
| BstMBI | GATC | 3 cut(s) | 229, 673, 733 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 179, 295, 304 |
| BstSLI | GKGCMC | 1 cut(s) | 211 |
| BstUI | CGCG | 1 cut(s) | 298 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstZ17I | GTATAC | 1 cut(s) | 564 |
| BsuI | GTATCC | 1 cut(s) | 53 |
| BtgI | CCRYGG | 1 cut(s) | 296 |
| Cfr13I | GGNCC | 1 cut(s) | 557 |
| Cfr42I | CCGCGG | 1 cut(s) | 299 |
| Csp6I | GTAC | 2 cut(s) | 122, 220 |
| CviAII | CATG | 2 cut(s) | 428, 649 |
| CviJI | RGCY | 6 cut(s) | 182, 307, 405, 447, 607, 669 |
| CviKI_1 | RGCY | 6 cut(s) | 182, 307, 405, 447, 607, 669 |
| CviQI | GTAC | 2 cut(s) | 122, 220 |
| DdeI | CTNAG | 2 cut(s) | 183, 216 |
| DpnI | GATC | 3 cut(s) | 231, 675, 735 |
| DpnII | GATC | 3 cut(s) | 229, 673, 733 |
| Eco32I | GATATC | 1 cut(s) | 636 |
| Eco47I | GGWCC | 1 cut(s) | 557 |
| EcoRI | GAATTC | 2 cut(s) | 332, 374 |
| EcoRV | GATATC | 1 cut(s) | 636 |
| FaeI | CATG | 2 cut(s) | 431, 652 |
| FaiI | YATR | 9 cut(s) | 54, 149, 176, 348, 429, 539, 564, 576, 650 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 362, 394 |
| FaqI | GGGAC | 1 cut(s) | 570 |
| FatI | CATG | 2 cut(s) | 427, 648 |
| FauI | CCCGC | 2 cut(s) | 303, 355 |
| FbaI | TGATCA | 1 cut(s) | 733 |
| FblI | GTMKAC | 1 cut(s) | 563 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 153, 438 |
| GluI | GCNGC | 1 cut(s) | 180 |
| Hin1II | CATG | 2 cut(s) | 431, 652 |
| HinfI | GANTC | 2 cut(s) | 697, 720 |
| Hpy166II | GTNNAC | 2 cut(s) | 70, 564 |
| Hpy188I | TCNGA | 1 cut(s) | 204 |
| Hpy188III | TCNNGA | 3 cut(s) | 233, 254, 707 |
| Hpy8I | GTNNAC | 2 cut(s) | 70, 564 |
| HpyAV | CCTTC | 3 cut(s) | 251, 260, 709 |
| HpyCH4III | ACNGT | 2 cut(s) | 561, 568 |
| HpyCH4IV | ACGT | 1 cut(s) | 702 |
| HpyCH4V | TGCA | 3 cut(s) | 13, 339, 508 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 179, 295, 304 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 216 |
| HpySE526I | ACGT | 1 cut(s) | 702 |
| Hsp92II | CATG | 2 cut(s) | 431, 652 |
| Ksp22I | TGATCA | 1 cut(s) | 733 |
| KspI | CCGCGG | 1 cut(s) | 299 |
| Kzo9I | GATC | 3 cut(s) | 229, 673, 733 |
| LpnPI | CCDG | 1 cut(s) | 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeI | CTAG | 2 cut(s) | 153, 438 |
| MaeII | ACGT | 1 cut(s) | 702 |
| MaeIII | GTNAC | 1 cut(s) | 75 |
| MalI | GATC | 3 cut(s) | 231, 675, 735 |
| MboI | GATC | 3 cut(s) | 229, 673, 733 |
| MboII | GAAGA | 4 cut(s) | 285, 640, 643, 706 |
| MfeI | CAATTG | 1 cut(s) | 677 |
| MhlI | GDGCHC | 1 cut(s) | 211 |
| MluCI | AATT | 7 cut(s) | 60, 129, 310, 332, 374, 386, 677 |
| MmeI | TCCRAC | 3 cut(s) | 94, 244, 748 |
| MnlI | CCTC | 8 cut(s) | 184, 198, 277, 313, 417, 482, 541, 604 |
| MroXI | GAANNNNTTC | 1 cut(s) | 198 |
| MslI | CAYNNNNRTG | 1 cut(s) | 528 |
| MspA1I | CMGCKG | 2 cut(s) | 182, 298 |
| MspCI | CTTAAG | 1 cut(s) | 542 |
| MunI | CAATTG | 1 cut(s) | 677 |
| MvnI | CGCG | 1 cut(s) | 298 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 179, 295, 304 |
| NdeII | GATC | 3 cut(s) | 229, 673, 733 |
| NlaIII | CATG | 2 cut(s) | 431, 652 |
| NlaIV | GGNNCC | 2 cut(s) | 159, 558 |
| OliI | CACNNNNGTG | 1 cut(s) | 528 |
| PdmI | GAANNNNTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 2 cut(s) | 697, 720 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PshBI | ATTAAT | 1 cut(s) | 654 |
| PspN4I | GGNNCC | 2 cut(s) | 159, 558 |
| PspPI | GGNCC | 1 cut(s) | 557 |
| PvuII | CAGCTG | 1 cut(s) | 182 |
| RsaI | GTAC | 2 cut(s) | 123, 221 |
| RsaNI | GTAC | 2 cut(s) | 122, 220 |
| RseI | CAYNNNNRTG | 1 cut(s) | 528 |
| SacII | CCGCGG | 1 cut(s) | 299 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 229, 673, 733 |
| Sau96I | GGNCC | 1 cut(s) | 557 |
| SduI | GDGCHC | 1 cut(s) | 211 |
| SetI | ASST | 8 cut(s) | 184, 247, 252, 288, 324, 407, 605, 705 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| Sfr303I | CCGCGG | 1 cut(s) | 299 |
| SgrBI | CCGCGG | 1 cut(s) | 299 |
| SinI | GGWCC | 1 cut(s) | 557 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 528 |
| SmlI | CTYRAG | 2 cut(s) | 542, 608 |
| SmoI | CTYRAG | 2 cut(s) | 542, 608 |
| Sse9I | AATT | 7 cut(s) | 60, 129, 310, 332, 374, 386, 677 |
| SsiI | CCGC | 3 cut(s) | 296, 298, 362 |
| SspMI | CTAG | 2 cut(s) | 153, 438 |
| TaaI | ACNGT | 2 cut(s) | 561, 568 |
| TaiI | ACGT | 1 cut(s) | 705 |
| TasI | AATT | 7 cut(s) | 60, 129, 310, 332, 374, 386, 677 |
| TatI | WGTACW | 1 cut(s) | 219 |
| TfiI | GAWTC | 2 cut(s) | 697, 720 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 1 cut(s) | 444 |
| Vha464I | CTTAAG | 1 cut(s) | 542 |
| VpaK11BI | GGWCC | 1 cut(s) | 557 |
| VspI | ATTAAT | 1 cut(s) | 654 |
| XapI | RAATTY | 3 cut(s) | 332, 374, 386 |
| XmiI | GTMKAC | 1 cut(s) | 563 |
| XmnI | GAANNNNTTC | 1 cut(s) | 198 |
| XspI | CTAG | 2 cut(s) | 153, 438 |