BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1319 |
| AccI | GTMKAC | 2 cut(s) | 389, 780 |
| AccII | CGCG | 1 cut(s) | 124 |
| AciI | CCGC | 5 cut(s) | 122, 124, 188, 698, 1049 |
| AclWI | GGATC | 3 cut(s) | 50, 989, 1002 |
| AcoI | YGGCCR | 1 cut(s) | 1362 |
| AcsI | RAATTY | 6 cut(s) | 158, 200, 212, 661, 870, 1022 |
| AcuI | CTGAAG | 2 cut(s) | 696, 1194 |
| AcvI | CACGTG | 1 cut(s) | 1352 |
| AfaI | GTAC | 4 cut(s) | 47, 707, 732, 1405 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 269, 886 |
| AflII | CTTAAG | 1 cut(s) | 368 |
| AflIII | ACRYGT | 1 cut(s) | 1192 |
| AgsI | TTSAA | 7 cut(s) | 83, 142, 533, 761, 815, 934, 1246 |
| AleI | CACNNNNGTG | 1 cut(s) | 354 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 947, 979 |
| Alw21I | GWGCWC | 2 cut(s) | 1313, 1477 |
| Alw26I | GTCTC | 1 cut(s) | 1491 |
| AlwI | GGATC | 3 cut(s) | 50, 989, 1002 |
| AoxI | GGCC | 2 cut(s) | 1362, 1415 |
| ApeKI | GCWGC | 4 cut(s) | 5, 986, 1067, 1070 |
| ApoI | RAATTY | 6 cut(s) | 158, 200, 212, 661, 870, 1022 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1082, 1114 |
| AseI | ATTAAT | 1 cut(s) | 480 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 24 |
| AspA2I | CCTAGG | 1 cut(s) | 1490 |
| AspS9I | GGNCC | 2 cut(s) | 383, 1409 |
| AsuHPI | GGTGA | 1 cut(s) | 842 |
| AvaII | GGWCC | 2 cut(s) | 383, 1409 |
| AvrII | CCTAGG | 1 cut(s) | 1490 |
| AxyI | CCTNAGG | 1 cut(s) | 741 |
| BaeGI | GKGCMC | 1 cut(s) | 37 |
| BalI | TGGCCA | 1 cut(s) | 1364 |
| BamHI | GGATCC | 1 cut(s) | 994 |
| BanI | GGYRCC | 1 cut(s) | 1319 |
| BauI | CACGAG | 1 cut(s) | 354 |
| BbrPI | CACGTG | 1 cut(s) | 1352 |
| Bbv12I | GWGCWC | 2 cut(s) | 1313, 1477 |
| BbvI | GCAGC | 4 cut(s) | 17, 998, 1054, 1082 |
| BccI | CCATC | 3 cut(s) | 212, 675, 1046 |
| BciVI | GTATCC | 1 cut(s) | 1338 |
| BclI | TGATCA | 1 cut(s) | 559 |
| BcoDI | GTCTC | 1 cut(s) | 1491 |
| BfaI | CTAG | 2 cut(s) | 264, 1491 |
| BfmI | CTRYAG | 3 cut(s) | 984, 1068, 1314 |
| BfrI | CTTAAG | 1 cut(s) | 368 |
| BfuI | GTATCC | 1 cut(s) | 1338 |
| BisI | GCNGC | 4 cut(s) | 6, 987, 1068, 1071 |
| BlnI | CCTAGG | 1 cut(s) | 1490 |
| BlpI | GCTNAGC | 1 cut(s) | 9 |
| BlsI | GCNGC | 4 cut(s) | 7, 988, 1069, 1072 |
| BmcAI | AGTACT | 2 cut(s) | 707, 1405 |
| Bme18I | GGWCC | 2 cut(s) | 383, 1409 |
| BmgT120I | GGNCC | 2 cut(s) | 383, 1409 |
| BmiI | GGNNCC | 3 cut(s) | 384, 996, 1321 |
| BmsI | GCATC | 2 cut(s) | 832, 893 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 1471 |
| BpmI | CTGGAG | 1 cut(s) | 704 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 9 |
| BpuEI | CTTGAG | 1 cut(s) | 455 |
| BsaAI | YACGTR | 1 cut(s) | 1352 |
| BsaI | GGTCTC | 1 cut(s) | 1491 |
| BsaJI | CCNNGG | 5 cut(s) | 122, 998, 1274, 1412, 1490 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 677, 707 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 269, 886 |
| Bse1I | ACTGG | 2 cut(s) | 1370, 1411 |
| Bse21I | CCTNAGG | 1 cut(s) | 741 |
| Bse3DI | GCAATG | 1 cut(s) | 48 |
| BseDI | CCNNGG | 5 cut(s) | 122, 998, 1274, 1412, 1490 |
| BseGI | GGATG | 1 cut(s) | 1057 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 269, 886 |
| BseMI | GCAATG | 1 cut(s) | 48 |
| BseMII | CTCAG | 2 cut(s) | 33, 732 |
| BseNI | ACTGG | 2 cut(s) | 1370, 1411 |
| BseRI | GAGGAG | 1 cut(s) | 452 |
| BseSI | GKGCMC | 1 cut(s) | 37 |
| BseXI | GCAGC | 4 cut(s) | 17, 998, 1054, 1082 |
| BsgI | GTGCAG | 1 cut(s) | 1123 |
| Bsh1236I | CGCG | 1 cut(s) | 124 |
| BshFI | GGCC | 2 cut(s) | 1364, 1417 |
| BshNI | GGYRCC | 1 cut(s) | 1319 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1313, 1477 |
| BslFI | GGGAC | 1 cut(s) | 396 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 269, 886 |
| BsmAI | GTCTC | 1 cut(s) | 1491 |
| BsmFI | GGGAC | 1 cut(s) | 396 |
| BsnI | GGCC | 2 cut(s) | 1364, 1417 |
| Bso31I | GGTCTC | 1 cut(s) | 1491 |
| Bsp1286I | GDGCHC | 3 cut(s) | 37, 1313, 1477 |
| Bsp143I | GATC | 5 cut(s) | 55, 499, 559, 774, 994 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 9 |
| BspACI | CCGC | 5 cut(s) | 122, 124, 188, 698, 1049 |
| BspANI | GGCC | 2 cut(s) | 1364, 1417 |
| BspCNI | CTCAG | 2 cut(s) | 34, 733 |
| BspFNI | CGCG | 1 cut(s) | 124 |
| BspHI | TCATGA | 1 cut(s) | 865 |
| BspLI | GGNNCC | 3 cut(s) | 384, 996, 1321 |
| BspMAI | CTGCAG | 3 cut(s) | 988, 1072, 1318 |
| BspPI | GGATC | 3 cut(s) | 50, 989, 1002 |
| BspT107I | GGYRCC | 1 cut(s) | 1319 |
| BspTI | CTTAAG | 1 cut(s) | 368 |
| BspTNI | GGTCTC | 1 cut(s) | 1491 |
| BsrDI | GCAATG | 1 cut(s) | 48 |
| BsrI | ACTGG | 2 cut(s) | 1370, 1411 |
| BssECI | CCNNGG | 5 cut(s) | 122, 998, 1274, 1412, 1490 |
| BssMI | GATC | 5 cut(s) | 55, 499, 559, 774, 994 |
| BssSI | CACGAG | 1 cut(s) | 354 |
| BssT1I | CCWWGG | 3 cut(s) | 1274, 1412, 1490 |
| Bst2BI | CACGAG | 1 cut(s) | 354 |
| Bst4CI | ACNGT | 3 cut(s) | 387, 394, 916 |
| Bst6I | CTCTTC | 1 cut(s) | 715 |
| BstAFI | CTTAAG | 1 cut(s) | 368 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 890 |
| BstBAI | YACGTR | 1 cut(s) | 1352 |
| BstC8I | GCNNGC | 4 cut(s) | 1318, 1380, 1419, 1461 |
| BstDEI | CTNAG | 3 cut(s) | 9, 42, 741 |
| BstDSI | CCRYGG | 1 cut(s) | 122 |
| BstF5I | GGATG | 1 cut(s) | 1057 |
| BstFNI | CGCG | 1 cut(s) | 124 |
| BstKTI | GATC | 5 cut(s) | 58, 502, 562, 777, 997 |
| BstMAI | GTCTC | 1 cut(s) | 1491 |
| BstMBI | GATC | 5 cut(s) | 55, 499, 559, 774, 994 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 121, 130, 890, 1317 |
| BstNSI | RCATGY | 2 cut(s) | 1196, 1463 |
| BstSFI | CTRYAG | 3 cut(s) | 984, 1068, 1314 |
| BstSLI | GKGCMC | 1 cut(s) | 37 |
| BstUI | CGCG | 1 cut(s) | 124 |
| BstV1I | GCAGC | 4 cut(s) | 17, 998, 1054, 1082 |
| BstX2I | RGATCY | 1 cut(s) | 994 |
| BstYI | RGATCY | 1 cut(s) | 994 |
| Bsu36I | CCTNAGG | 1 cut(s) | 741 |
| BsuI | GTATCC | 1 cut(s) | 1338 |
| BsuRI | GGCC | 2 cut(s) | 1364, 1417 |
| BtgI | CCRYGG | 1 cut(s) | 122 |
| BtsCI | GGATG | 1 cut(s) | 1057 |
| BtsI | GCAGTG | 2 cut(s) | 1311, 1454 |
| BtsIMutI | CAGTG | 3 cut(s) | 720, 1311, 1454 |
| Cac8I | GCNNGC | 4 cut(s) | 1318, 1380, 1419, 1461 |
| CciI | TCATGA | 1 cut(s) | 865 |
| Cfr13I | GGNCC | 2 cut(s) | 383, 1409 |
| Cfr42I | CCGCGG | 1 cut(s) | 125 |
| Csp6I | GTAC | 4 cut(s) | 46, 706, 731, 1404 |
| CviAII | CATG | 8 cut(s) | 254, 475, 857, 866, 1118, 1193, 1441, 1460 |
| CviQI | GTAC | 4 cut(s) | 46, 706, 731, 1404 |
| DdeI | CTNAG | 3 cut(s) | 9, 42, 741 |
| DpnI | GATC | 5 cut(s) | 57, 501, 561, 776, 996 |
| DpnII | GATC | 5 cut(s) | 55, 499, 559, 774, 994 |
| DraI | TTTAAA | 1 cut(s) | 1006 |
| EaeI | YGGCCR | 1 cut(s) | 1362 |
| Eam1104I | CTCTTC | 1 cut(s) | 715 |
| EarI | CTCTTC | 1 cut(s) | 715 |
| EciI | GGCGGA | 1 cut(s) | 1064 |
| Eco130I | CCWWGG | 3 cut(s) | 1274, 1412, 1490 |
| Eco31I | GGTCTC | 1 cut(s) | 1491 |
| Eco32I | GATATC | 1 cut(s) | 462 |
| Eco47I | GGWCC | 2 cut(s) | 383, 1409 |
| Eco57I | CTGAAG | 2 cut(s) | 696, 1194 |
| Eco72I | CACGTG | 1 cut(s) | 1352 |
| Eco81I | CCTNAGG | 1 cut(s) | 741 |
| EcoRI | GAATTC | 2 cut(s) | 158, 200 |
| EcoRV | GATATC | 1 cut(s) | 462 |
| EcoT14I | CCWWGG | 3 cut(s) | 1274, 1412, 1490 |
| ErhI | CCWWGG | 3 cut(s) | 1274, 1412, 1490 |
| FaeI | CATG | 8 cut(s) | 257, 478, 860, 869, 1121, 1196, 1444, 1463 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 188, 220 |
| FaqI | GGGAC | 1 cut(s) | 396 |
| FatI | CATG | 8 cut(s) | 253, 474, 856, 865, 1117, 1192, 1440, 1459 |
| FauI | CCCGC | 3 cut(s) | 129, 181, 691 |
| FbaI | TGATCA | 1 cut(s) | 559 |
| FblI | GTMKAC | 2 cut(s) | 389, 780 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 987, 1068, 1071 |
| FokI | GGATG | 1 cut(s) | 1064 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 987, 1068, 1071 |
| FspBI | CTAG | 2 cut(s) | 264, 1491 |
| GluI | GCNGC | 4 cut(s) | 6, 987, 1068, 1071 |
| GsuI | CTGGAG | 1 cut(s) | 704 |
| HaeIII | GGCC | 2 cut(s) | 1364, 1417 |
| Hin1II | CATG | 8 cut(s) | 257, 478, 860, 869, 1121, 1196, 1444, 1463 |
| HincII | GTYRAC | 1 cut(s) | 718 |
| HindII | GTYRAC | 1 cut(s) | 718 |
| HindIII | AAGCTT | 1 cut(s) | 936 |
| HinfI | GANTC | 5 cut(s) | 523, 546, 1148, 1169, 1198 |
| HphI | GGTGA | 1 cut(s) | 842 |
| Hpy166II | GTNNAC | 6 cut(s) | 390, 718, 781, 1135, 1236, 1438 |
| Hpy188I | TCNGA | 7 cut(s) | 30, 876, 898, 1126, 1168, 1174, 1479 |
| Hpy188III | TCNNGA | 7 cut(s) | 59, 80, 533, 683, 866, 992, 1256 |
| Hpy8I | GTNNAC | 6 cut(s) | 390, 718, 781, 1135, 1236, 1438 |
| Hpy99I | CGWCG | 1 cut(s) | 1022 |
| HpyAV | CCTTC | 5 cut(s) | 77, 86, 535, 755, 1169 |
| HpyCH4III | ACNGT | 3 cut(s) | 387, 394, 916 |
| HpyCH4IV | ACGT | 3 cut(s) | 528, 1017, 1351 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 121, 130, 890, 1317 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 42, 741 |
| HpySE526I | ACGT | 3 cut(s) | 528, 1017, 1351 |
| Hsp92II | CATG | 8 cut(s) | 257, 478, 860, 869, 1121, 1196, 1444, 1463 |
| Ksp22I | TGATCA | 1 cut(s) | 559 |
| KspI | CCGCGG | 1 cut(s) | 125 |
| Kzo9I | GATC | 5 cut(s) | 55, 499, 559, 774, 994 |
| LmnI | GCTCC | 2 cut(s) | 1308, 1479 |
| Lsp1109I | GCAGC | 4 cut(s) | 17, 998, 1054, 1082 |
| LweI | GCATC | 2 cut(s) | 832, 893 |
| MaeI | CTAG | 2 cut(s) | 264, 1491 |
| MaeII | ACGT | 3 cut(s) | 528, 1017, 1351 |
| MaeIII | GTNAC | 2 cut(s) | 655, 1215 |
| MalI | GATC | 5 cut(s) | 57, 501, 561, 776, 996 |
| MboI | GATC | 5 cut(s) | 55, 499, 559, 774, 994 |
| MboII | GAAGA | 8 cut(s) | 111, 466, 469, 532, 702, 763, 1023, 1271 |
| MfeI | CAATTG | 2 cut(s) | 503, 1241 |
| MflI | RGATCY | 1 cut(s) | 994 |
| MhlI | GDGCHC | 3 cut(s) | 37, 1313, 1477 |
| MlsI | TGGCCA | 1 cut(s) | 1364 |
| MluNI | TGGCCA | 1 cut(s) | 1364 |
| MmeI | TCCRAC | 2 cut(s) | 70, 574 |
| Mox20I | TGGCCA | 1 cut(s) | 1364 |
| MroXI | GAANNNNTTC | 1 cut(s) | 24 |
| MscI | TGGCCA | 1 cut(s) | 1364 |
| MslI | CAYNNNNRTG | 2 cut(s) | 354, 855 |
| Msp20I | TGGCCA | 1 cut(s) | 1364 |
| MspA1I | CMGCKG | 5 cut(s) | 8, 124, 698, 1073, 1421 |
| MspCI | CTTAAG | 1 cut(s) | 368 |
| MunI | CAATTG | 2 cut(s) | 503, 1241 |
| MvnI | CGCG | 1 cut(s) | 124 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 121, 130, 890, 1317 |
| NdeII | GATC | 5 cut(s) | 55, 499, 559, 774, 994 |
| NlaIII | CATG | 8 cut(s) | 257, 478, 860, 869, 1121, 1196, 1444, 1463 |
| NlaIV | GGNNCC | 3 cut(s) | 384, 996, 1321 |
| NmuCI | GTSAC | 1 cut(s) | 655 |
| NspI | RCATGY | 2 cut(s) | 1196, 1463 |
| OliI | CACNNNNGTG | 1 cut(s) | 354 |
| PaeI | GCATGC | 1 cut(s) | 1463 |
| PagI | TCATGA | 1 cut(s) | 865 |
| PciI | ACATGT | 1 cut(s) | 1192 |
| PdmI | GAANNNNTTC | 1 cut(s) | 24 |
| PfeI | GAWTC | 5 cut(s) | 523, 546, 1148, 1169, 1198 |
| PkrI | GCNGC | 4 cut(s) | 7, 988, 1069, 1072 |
| PmaCI | CACGTG | 1 cut(s) | 1352 |
| PmlI | CACGTG | 1 cut(s) | 1352 |
| Ppu21I | YACGTR | 1 cut(s) | 1352 |
| PscI | ACATGT | 1 cut(s) | 1192 |
| PshBI | ATTAAT | 1 cut(s) | 480 |
| PspCI | CACGTG | 1 cut(s) | 1352 |
| PspN4I | GGNNCC | 3 cut(s) | 384, 996, 1321 |
| PspPI | GGNCC | 2 cut(s) | 383, 1409 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1254, 1286 |
| PstI | CTGCAG | 3 cut(s) | 988, 1072, 1318 |
| PsuI | RGATCY | 1 cut(s) | 994 |
| PvuII | CAGCTG | 3 cut(s) | 8, 1073, 1421 |
| RsaI | GTAC | 4 cut(s) | 47, 707, 732, 1405 |
| RsaNI | GTAC | 4 cut(s) | 46, 706, 731, 1404 |
| RseI | CAYNNNNRTG | 2 cut(s) | 354, 855 |
| SacII | CCGCGG | 1 cut(s) | 125 |
| SatI | GCNGC | 4 cut(s) | 6, 987, 1068, 1071 |
| Sau3AI | GATC | 5 cut(s) | 55, 499, 559, 774, 994 |
| Sau96I | GGNCC | 2 cut(s) | 383, 1409 |
| ScaI | AGTACT | 2 cut(s) | 707, 1405 |
| SduI | GDGCHC | 3 cut(s) | 37, 1313, 1477 |
| SfaNI | GCATC | 2 cut(s) | 832, 893 |
| SfcI | CTRYAG | 3 cut(s) | 984, 1068, 1314 |
| Sfr303I | CCGCGG | 1 cut(s) | 125 |
| SgrBI | CCGCGG | 1 cut(s) | 125 |
| SinI | GGWCC | 2 cut(s) | 383, 1409 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 354, 855 |
| SmlI | CTYRAG | 2 cut(s) | 368, 434 |
| SmoI | CTYRAG | 2 cut(s) | 368, 434 |
| SphI | GCATGC | 1 cut(s) | 1463 |
| SsiI | CCGC | 5 cut(s) | 122, 124, 188, 698, 1049 |
| SspMI | CTAG | 2 cut(s) | 264, 1491 |
| StyI | CCWWGG | 3 cut(s) | 1274, 1412, 1490 |
| TaaI | ACNGT | 3 cut(s) | 387, 394, 916 |
| TaiI | ACGT | 3 cut(s) | 531, 1020, 1354 |
| TaqI | TCGA | 1 cut(s) | 1020 |
| TatI | WGTACW | 3 cut(s) | 45, 705, 1403 |
| TfiI | GAWTC | 5 cut(s) | 523, 546, 1148, 1169, 1198 |
| TscAI | CASTG | 3 cut(s) | 727, 1318, 1461 |
| TseFI | GTSAC | 1 cut(s) | 655 |
| TseI | GCWGC | 4 cut(s) | 5, 986, 1067, 1070 |
| Tsp45I | GTSAC | 1 cut(s) | 655 |
| TspDTI | ATGAA | 7 cut(s) | 270, 807, 854, 882, 1025, 1119, 1457 |
| TspRI | CASTG | 3 cut(s) | 727, 1318, 1461 |
| Vha464I | CTTAAG | 1 cut(s) | 368 |
| VpaK11BI | GGWCC | 2 cut(s) | 383, 1409 |
| VspI | ATTAAT | 1 cut(s) | 480 |
| XapI | RAATTY | 6 cut(s) | 158, 200, 212, 661, 870, 1022 |
| XceI | RCATGY | 2 cut(s) | 1196, 1463 |
| XmaJI | CCTAGG | 1 cut(s) | 1490 |
| XmiI | GTMKAC | 2 cut(s) | 389, 780 |
| XmnI | GAANNNNTTC | 1 cut(s) | 24 |
| XspI | CTAG | 2 cut(s) | 264, 1491 |
| ZrmI | AGTACT | 2 cut(s) | 707, 1405 |