BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 918, 1449 |
| AccIII | TCCGGA | 1 cut(s) | 369 |
| AciI | CCGC | 2 cut(s) | 134, 1168 |
| AclWI | GGATC | 4 cut(s) | 922, 1040, 1053, 1159 |
| AcoI | YGGCCR | 1 cut(s) | 274 |
| AcsI | RAATTY | 5 cut(s) | 12, 55, 212, 456, 921 |
| AcuI | CTGAAG | 2 cut(s) | 432, 1524 |
| AfaI | GTAC | 1 cut(s) | 783 |
| AfeI | AGCGCT | 1 cut(s) | 1041 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 110, 250, 1253 |
| AflIII | ACRYGT | 4 cut(s) | 881, 978, 1011, 1525 |
| AgsI | TTSAA | 9 cut(s) | 95, 154, 446, 626, 812, 866, 985, 1086, 1540 |
| AjnI | CCWGG | 4 cut(s) | 16, 537, 1418, 1436 |
| AleI | CACNNNNGTG | 1 cut(s) | 270 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 455, 487, 998, 1030 |
| Alw21I | GWGCWC | 2 cut(s) | 724, 1409 |
| AlwI | GGATC | 4 cut(s) | 922, 1040, 1053, 1159 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1472 |
| Aor13HI | TCCGGA | 1 cut(s) | 369 |
| Aor51HI | AGCGCT | 1 cut(s) | 1041 |
| AoxI | GGCC | 3 cut(s) | 274, 1416, 1511 |
| ApeKI | GCWGC | 5 cut(s) | 38, 727, 1037, 1118, 1121 |
| ApoI | RAATTY | 5 cut(s) | 12, 55, 212, 456, 921 |
| AseI | ATTAAT | 1 cut(s) | 768 |
| AspLEI | GCGC | 1 cut(s) | 1042 |
| AspS9I | GGNCC | 1 cut(s) | 1416 |
| AsuHPI | GGTGA | 3 cut(s) | 698, 893, 1294 |
| AxyI | CCTNAGG | 1 cut(s) | 792 |
| BamHI | GGATCC | 1 cut(s) | 1045 |
| BanII | GRGCYC | 1 cut(s) | 724 |
| Bbv12I | GWGCWC | 2 cut(s) | 724, 1409 |
| BbvI | GCAGC | 5 cut(s) | 25, 739, 1049, 1105, 1133 |
| BccI | CCATC | 3 cut(s) | 82, 224, 1435 |
| BceAI | ACGGC | 1 cut(s) | 261 |
| BciT130I | CCWGG | 4 cut(s) | 18, 539, 1420, 1438 |
| BciVI | GTATCC | 2 cut(s) | 277, 1434 |
| BclI | TGATCA | 2 cut(s) | 597, 1315 |
| BfaI | CTAG | 4 cut(s) | 6, 119, 483, 1562 |
| BfmI | CTRYAG | 5 cut(s) | 69, 725, 1035, 1119, 1410 |
| BfoI | RGCGCY | 1 cut(s) | 1043 |
| BfuI | GTATCC | 2 cut(s) | 277, 1434 |
| BisI | GCNGC | 5 cut(s) | 39, 728, 1038, 1119, 1122 |
| BlsI | GCNGC | 5 cut(s) | 40, 729, 1039, 1120, 1123 |
| Bme1390I | CCNGG | 4 cut(s) | 18, 539, 1420, 1438 |
| BmgT120I | GGNCC | 1 cut(s) | 1416 |
| BmiI | GGNNCC | 2 cut(s) | 1047, 1417 |
| BmrFI | CCNGG | 4 cut(s) | 18, 539, 1420, 1438 |
| BmsI | GCATC | 2 cut(s) | 607, 1378 |
| BpmI | CTGGAG | 1 cut(s) | 1289 |
| BsaJI | CCNNGG | 4 cut(s) | 249, 972, 1049, 1370 |
| BsaWI | WCCGGW | 1 cut(s) | 369 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 605, 635 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 110, 250, 1253 |
| Bse1I | ACTGG | 2 cut(s) | 1306, 1466 |
| Bse21I | CCTNAGG | 1 cut(s) | 792 |
| Bse3DI | GCAATG | 1 cut(s) | 1342 |
| BseAI | TCCGGA | 1 cut(s) | 369 |
| BseBI | CCWGG | 4 cut(s) | 18, 539, 1420, 1438 |
| BseDI | CCNNGG | 4 cut(s) | 249, 972, 1049, 1370 |
| BseGI | GGATG | 6 cut(s) | 394, 534, 622, 1012, 1262, 1446 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 110, 250, 1253 |
| BseMI | GCAATG | 1 cut(s) | 1342 |
| BseMII | CTCAG | 5 cut(s) | 98, 160, 507, 783, 1167 |
| BseNI | ACTGG | 2 cut(s) | 1306, 1466 |
| BseXI | GCAGC | 5 cut(s) | 25, 739, 1049, 1105, 1133 |
| BsgI | GTGCAG | 1 cut(s) | 303 |
| Bsh1236I | CGCG | 2 cut(s) | 918, 1449 |
| BshFI | GGCC | 3 cut(s) | 276, 1418, 1513 |
| BsiHKAI | GWGCWC | 2 cut(s) | 724, 1409 |
| BsiSI | CCGG | 1 cut(s) | 370 |
| BslFI | GGGAC | 1 cut(s) | 605 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 110, 250, 1253 |
| BsmFI | GGGAC | 1 cut(s) | 605 |
| BsmI | GAATGC | 3 cut(s) | 176, 1493, 1561 |
| BsnI | GGCC | 3 cut(s) | 276, 1418, 1513 |
| Bsp1286I | GDGCHC | 2 cut(s) | 724, 1409 |
| Bsp13I | TCCGGA | 1 cut(s) | 369 |
| Bsp143I | GATC | 5 cut(s) | 597, 927, 1045, 1164, 1315 |
| Bsp19I | CCATGG | 1 cut(s) | 249 |
| Bsp68I | TCGCGA | 1 cut(s) | 918 |
| BspACI | CCGC | 2 cut(s) | 134, 1168 |
| BspANI | GGCC | 3 cut(s) | 276, 1418, 1513 |
| BspCNI | CTCAG | 5 cut(s) | 97, 159, 508, 784, 1168 |
| BspEI | TCCGGA | 1 cut(s) | 369 |
| BspFNI | CGCG | 2 cut(s) | 918, 1449 |
| BspLI | GGNNCC | 2 cut(s) | 1047, 1417 |
| BspMAI | CTGCAG | 5 cut(s) | 73, 729, 1039, 1123, 1414 |
| BspPI | GGATC | 4 cut(s) | 922, 1040, 1053, 1159 |
| BsrDI | GCAATG | 1 cut(s) | 1342 |
| BsrI | ACTGG | 2 cut(s) | 1306, 1466 |
| BssECI | CCNNGG | 4 cut(s) | 249, 972, 1049, 1370 |
| BssMI | GATC | 5 cut(s) | 597, 927, 1045, 1164, 1315 |
| BssT1I | CCWWGG | 3 cut(s) | 249, 972, 1370 |
| Bst2UI | CCWGG | 4 cut(s) | 18, 539, 1420, 1438 |
| Bst4CI | ACNGT | 1 cut(s) | 1023 |
| Bst6I | CTCTTC | 2 cut(s) | 757, 1486 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 59, 1034 |
| BstC8I | GCNNGC | 7 cut(s) | 64, 176, 1112, 1116, 1323, 1447, 1515 |
| BstDEI | CTNAG | 8 cut(s) | 84, 146, 217, 362, 516, 792, 1176, 1587 |
| BstDSI | CCRYGG | 1 cut(s) | 249 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 108 |
| BstF5I | GGATG | 6 cut(s) | 394, 534, 622, 1012, 1262, 1446 |
| BstFNI | CGCG | 2 cut(s) | 918, 1449 |
| BstH2I | RGCGCY | 1 cut(s) | 1043 |
| BstHHI | GCGC | 1 cut(s) | 1042 |
| BstKTI | GATC | 5 cut(s) | 600, 930, 1048, 1167, 1318 |
| BstMBI | GATC | 5 cut(s) | 597, 927, 1045, 1164, 1315 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 59, 68, 133, 142, 968, 1034, 1259, 1514 |
| BstNI | CCWGG | 4 cut(s) | 18, 539, 1420, 1438 |
| BstNSI | RCATGY | 5 cut(s) | 178, 885, 982, 1015, 1529 |
| BstSCI | CCNGG | 4 cut(s) | 16, 537, 1418, 1436 |
| BstSFI | CTRYAG | 5 cut(s) | 69, 725, 1035, 1119, 1410 |
| BstUI | CGCG | 2 cut(s) | 918, 1449 |
| BstV1I | GCAGC | 5 cut(s) | 25, 739, 1049, 1105, 1133 |
| BstX2I | RGATCY | 1 cut(s) | 1045 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 560 |
| BstYI | RGATCY | 1 cut(s) | 1045 |
| Bsu36I | CCTNAGG | 1 cut(s) | 792 |
| BsuI | GTATCC | 2 cut(s) | 277, 1434 |
| BsuRI | GGCC | 3 cut(s) | 276, 1418, 1513 |
| BtgI | CCRYGG | 1 cut(s) | 249 |
| BtgZI | GCGATG | 2 cut(s) | 432, 516 |
| BtsCI | GGATG | 6 cut(s) | 394, 534, 622, 1012, 1262, 1446 |
| BtsI | GCAGTG | 1 cut(s) | 1407 |
| BtsIMutI | CAGTG | 2 cut(s) | 1407, 1591 |
| BtuMI | TCGCGA | 1 cut(s) | 918 |
| Cac8I | GCNNGC | 7 cut(s) | 64, 176, 1112, 1116, 1323, 1447, 1515 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1472 |
| CfoI | GCGC | 1 cut(s) | 1042 |
| Cfr13I | GGNCC | 1 cut(s) | 1416 |
| Csp6I | GTAC | 1 cut(s) | 782 |
| CviAII | CATG | 7 cut(s) | 175, 250, 595, 882, 979, 1012, 1526 |
| CviQI | GTAC | 1 cut(s) | 782 |
| DdeI | CTNAG | 8 cut(s) | 84, 146, 217, 362, 516, 792, 1176, 1587 |
| DpnI | GATC | 5 cut(s) | 599, 929, 1047, 1166, 1317 |
| DpnII | GATC | 5 cut(s) | 597, 927, 1045, 1164, 1315 |
| EaeI | YGGCCR | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 2 cut(s) | 757, 1486 |
| EarI | CTCTTC | 2 cut(s) | 757, 1486 |
| Ecl136II | GAGCTC | 1 cut(s) | 722 |
| Eco130I | CCWWGG | 3 cut(s) | 249, 972, 1370 |
| Eco24I | GRGCYC | 1 cut(s) | 724 |
| Eco32I | GATATC | 2 cut(s) | 471, 640 |
| Eco47III | AGCGCT | 1 cut(s) | 1041 |
| Eco53kI | GAGCTC | 1 cut(s) | 722 |
| Eco57I | CTGAAG | 2 cut(s) | 432, 1524 |
| Eco81I | CCTNAGG | 1 cut(s) | 792 |
| EcoICRI | GAGCTC | 1 cut(s) | 722 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 108 |
| EcoRI | GAATTC | 2 cut(s) | 12, 456 |
| EcoRII | CCWGG | 4 cut(s) | 16, 537, 1418, 1436 |
| EcoRV | GATATC | 2 cut(s) | 471, 640 |
| EcoT14I | CCWWGG | 3 cut(s) | 249, 972, 1370 |
| EcoT22I | ATGCAT | 3 cut(s) | 176, 859, 1393 |
| EcoT38I | GRGCYC | 1 cut(s) | 724 |
| ErhI | CCWWGG | 3 cut(s) | 249, 972, 1370 |
| FaeI | CATG | 7 cut(s) | 178, 253, 598, 885, 982, 1015, 1529 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 200, 232 |
| FaqI | GGGAC | 1 cut(s) | 605 |
| FatI | CATG | 7 cut(s) | 174, 249, 594, 881, 978, 1011, 1525 |
| FauNDI | CATATG | 1 cut(s) | 1486 |
| FbaI | TGATCA | 2 cut(s) | 597, 1315 |
| Fnu4HI | GCNGC | 5 cut(s) | 39, 728, 1038, 1119, 1122 |
| FokI | GGATG | 6 cut(s) | 401, 521, 629, 1019, 1269, 1453 |
| FriOI | GRGCYC | 1 cut(s) | 724 |
| Fsp4HI | GCNGC | 5 cut(s) | 39, 728, 1038, 1119, 1122 |
| FspBI | CTAG | 4 cut(s) | 6, 119, 483, 1562 |
| GlaI | GCGC | 1 cut(s) | 1041 |
| GluI | GCNGC | 5 cut(s) | 39, 728, 1038, 1119, 1122 |
| GsuI | CTGGAG | 1 cut(s) | 1289 |
| HaeII | RGCGCY | 1 cut(s) | 1043 |
| HaeIII | GGCC | 3 cut(s) | 276, 1418, 1513 |
| HapII | CCGG | 1 cut(s) | 370 |
| HhaI | GCGC | 1 cut(s) | 1042 |
| Hin1II | CATG | 7 cut(s) | 178, 253, 598, 885, 982, 1015, 1529 |
| Hin6I | GCGC | 1 cut(s) | 1040 |
| HinP1I | GCGC | 1 cut(s) | 1040 |
| HpaII | CCGG | 1 cut(s) | 370 |
| HphI | GGTGA | 3 cut(s) | 698, 893, 1294 |
| Hpy166II | GTNNAC | 1 cut(s) | 223 |
| Hpy8I | GTNNAC | 1 cut(s) | 223 |
| HpyAV | CCTTC | 4 cut(s) | 407, 806, 1097, 1229 |
| HpyCH4III | ACNGT | 1 cut(s) | 1023 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 59, 68, 133, 142, 968, 1034, 1259, 1514 |
| HpyF3I | CTNAG | 8 cut(s) | 84, 146, 217, 362, 516, 792, 1176, 1587 |
| Hsp92II | CATG | 7 cut(s) | 178, 253, 598, 885, 982, 1015, 1529 |
| HspAI | GCGC | 1 cut(s) | 1040 |
| Kpn2I | TCCGGA | 1 cut(s) | 369 |
| Ksp22I | TGATCA | 2 cut(s) | 597, 1315 |
| Kzo9I | GATC | 5 cut(s) | 597, 927, 1045, 1164, 1315 |
| LmnI | GCTCC | 2 cut(s) | 719, 1404 |
| Lsp1109I | GCAGC | 5 cut(s) | 25, 739, 1049, 1105, 1133 |
| LweI | GCATC | 2 cut(s) | 607, 1378 |
| MaeI | CTAG | 4 cut(s) | 6, 119, 483, 1562 |
| MaeIII | GTNAC | 1 cut(s) | 530 |
| MalI | GATC | 5 cut(s) | 599, 929, 1047, 1166, 1317 |
| MboI | GATC | 5 cut(s) | 597, 927, 1045, 1164, 1315 |
| MflI | RGATCY | 1 cut(s) | 1045 |
| MhlI | GDGCHC | 2 cut(s) | 724, 1409 |
| MluCI | AATT | 8 cut(s) | 12, 55, 212, 337, 456, 825, 921, 1298 |
| MlyI | GAGTC | 3 cut(s) | 382, 401, 1384 |
| MmeI | TCCRAC | 1 cut(s) | 577 |
| Mph1103I | ATGCAT | 3 cut(s) | 176, 859, 1393 |
| MroI | TCCGGA | 1 cut(s) | 369 |
| MseI | TTAA | 8 cut(s) | 141, 435, 633, 768, 824, 1056, 1092, 1310 |
| MslI | CAYNNNNRTG | 3 cut(s) | 270, 585, 906 |
| MspA1I | CMGCKG | 4 cut(s) | 568, 661, 1124, 1517 |
| MspI | CCGG | 1 cut(s) | 370 |
| MspR9I | CCNGG | 4 cut(s) | 18, 539, 1420, 1438 |
| Mva1269I | GAATGC | 3 cut(s) | 176, 1493, 1561 |
| MvaI | CCWGG | 4 cut(s) | 18, 539, 1420, 1438 |
| MvnI | CGCG | 2 cut(s) | 918, 1449 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 59, 68, 133, 142, 968, 1034, 1259, 1514 |
| NcoI | CCATGG | 1 cut(s) | 249 |
| NdeI | CATATG | 1 cut(s) | 1486 |
| NdeII | GATC | 5 cut(s) | 597, 927, 1045, 1164, 1315 |
| NlaIII | CATG | 7 cut(s) | 178, 253, 598, 885, 982, 1015, 1529 |
| NlaIV | GGNNCC | 2 cut(s) | 1047, 1417 |
| NmuCI | GTSAC | 1 cut(s) | 530 |
| NruI | TCGCGA | 1 cut(s) | 918 |
| NsiI | ATGCAT | 3 cut(s) | 176, 859, 1393 |
| NspI | RCATGY | 5 cut(s) | 178, 885, 982, 1015, 1529 |
| OliI | CACNNNNGTG | 1 cut(s) | 270 |
| PaeI | GCATGC | 1 cut(s) | 178 |
| PciI | ACATGT | 4 cut(s) | 881, 978, 1011, 1525 |
| PctI | GAATGC | 3 cut(s) | 176, 1493, 1561 |
| PfeI | GAWTC | 8 cut(s) | 130, 506, 547, 1199, 1211, 1217, 1229, 1264 |
| PfoI | TCCNGGA | 2 cut(s) | 537, 1436 |
| PkrI | GCNGC | 5 cut(s) | 40, 729, 1039, 1120, 1123 |
| PleI | GAGTC | 3 cut(s) | 381, 400, 1383 |
| PpsI | GAGTC | 3 cut(s) | 381, 400, 1383 |
| PscI | ACATGT | 4 cut(s) | 881, 978, 1011, 1525 |
| PshBI | ATTAAT | 1 cut(s) | 768 |
| Psp124BI | GAGCTC | 1 cut(s) | 724 |
| Psp6I | CCWGG | 4 cut(s) | 16, 537, 1418, 1436 |
| PspGI | CCWGG | 4 cut(s) | 16, 537, 1418, 1436 |
| PspN4I | GGNNCC | 2 cut(s) | 1047, 1417 |
| PspPI | GGNCC | 1 cut(s) | 1416 |
| PstI | CTGCAG | 5 cut(s) | 73, 729, 1039, 1123, 1414 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1472 |
| PsuI | RGATCY | 1 cut(s) | 1045 |
| PvuII | CAGCTG | 4 cut(s) | 568, 661, 1124, 1517 |
| RruI | TCGCGA | 1 cut(s) | 918 |
| RsaI | GTAC | 1 cut(s) | 783 |
| RsaNI | GTAC | 1 cut(s) | 782 |
| RseI | CAYNNNNRTG | 3 cut(s) | 270, 585, 906 |
| SacI | GAGCTC | 1 cut(s) | 724 |
| SaqAI | TTAA | 8 cut(s) | 141, 435, 633, 768, 824, 1056, 1092, 1310 |
| SatI | GCNGC | 5 cut(s) | 39, 728, 1038, 1119, 1122 |
| Sau3AI | GATC | 5 cut(s) | 597, 927, 1045, 1164, 1315 |
| Sau96I | GGNCC | 1 cut(s) | 1416 |
| SchI | GAGTC | 3 cut(s) | 382, 401, 1384 |
| ScrFI | CCNGG | 4 cut(s) | 18, 539, 1420, 1438 |
| SduI | GDGCHC | 2 cut(s) | 724, 1409 |
| SfaNI | GCATC | 2 cut(s) | 607, 1378 |
| SfcI | CTRYAG | 5 cut(s) | 69, 725, 1035, 1119, 1410 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 270, 585, 906 |
| SphI | GCATGC | 1 cut(s) | 178 |
| Sse9I | AATT | 8 cut(s) | 12, 55, 212, 337, 456, 825, 921, 1298 |
| SsiI | CCGC | 2 cut(s) | 134, 1168 |
| SspMI | CTAG | 4 cut(s) | 6, 119, 483, 1562 |
| SstI | GAGCTC | 1 cut(s) | 724 |
| StyD4I | CCNGG | 4 cut(s) | 16, 537, 1418, 1436 |
| StyI | CCWWGG | 3 cut(s) | 249, 972, 1370 |
| TaaI | ACNGT | 1 cut(s) | 1023 |
| TaqI | TCGA | 2 cut(s) | 1386, 1573 |
| TasI | AATT | 8 cut(s) | 12, 55, 212, 337, 456, 825, 921, 1298 |
| TfiI | GAWTC | 8 cut(s) | 130, 506, 547, 1199, 1211, 1217, 1229, 1264 |
| Tru1I | TTAA | 8 cut(s) | 141, 435, 633, 768, 824, 1056, 1092, 1310 |
| Tru9I | TTAA | 8 cut(s) | 141, 435, 633, 768, 824, 1056, 1092, 1310 |
| TscAI | CASTG | 1 cut(s) | 1414 |
| TseFI | GTSAC | 1 cut(s) | 530 |
| TseI | GCWGC | 5 cut(s) | 38, 727, 1037, 1118, 1121 |
| Tsp45I | GTSAC | 1 cut(s) | 530 |
| TspDTI | ATGAA | 8 cut(s) | 498, 858, 1076, 1154, 1170, 1473, 1536, 1568 |
| TspGWI | ACGGA | 2 cut(s) | 250, 644 |
| TspRI | CASTG | 1 cut(s) | 1414 |
| VspI | ATTAAT | 1 cut(s) | 768 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 108 |
| XapI | RAATTY | 5 cut(s) | 12, 55, 212, 456, 921 |
| XbaI | TCTAGA | 2 cut(s) | 5, 118 |
| XceI | RCATGY | 5 cut(s) | 178, 885, 982, 1015, 1529 |
| XspI | CTAG | 4 cut(s) | 6, 119, 483, 1562 |
| Zsp2I | ATGCAT | 3 cut(s) | 176, 859, 1393 |