Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 431 - 529 | 2.8e-28 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 719 |
| AccI | GTMKAC | 1 cut(s) | 1354 |
| AciI | CCGC | 2 cut(s) | 743, 1393 |
| AclWI | GGATC | 4 cut(s) | 1380, 1469, 1482, 1598 |
| AcsI | RAATTY | 7 cut(s) | 225, 410, 721, 808, 1123, 1177, 1253 |
| AfaI | GTAC | 3 cut(s) | 129, 999, 1430 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 749 |
| AflII | CTTAAG | 2 cut(s) | 53, 1186 |
| AflIII | ACRYGT | 1 cut(s) | 1280 |
| AleI | CACNNNNGTG | 1 cut(s) | 750 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 181, 213 |
| AluBI | AGCT | 8 cut(s) | 22, 434, 462, 545, 1169, 1446, 1599, 1665 |
| AluI | AGCT | 8 cut(s) | 22, 434, 462, 545, 1169, 1446, 1599, 1665 |
| Alw21I | GWGCWC | 4 cut(s) | 52, 341, 937, 1153 |
| Alw26I | GTCTC | 1 cut(s) | 607 |
| AlwI | GGATC | 4 cut(s) | 1380, 1469, 1482, 1598 |
| ApeKI | GCWGC | 1 cut(s) | 22 |
| ApoI | RAATTY | 7 cut(s) | 225, 410, 721, 808, 1123, 1177, 1253 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 616, 648 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1334 |
| AspA2I | CCTAGG | 1 cut(s) | 1478 |
| AspS9I | GGNCC | 2 cut(s) | 639, 1526 |
| AsuHPI | GGTGA | 3 cut(s) | 248, 360, 1240 |
| AvaII | GGWCC | 2 cut(s) | 639, 1526 |
| AvrII | CCTAGG | 1 cut(s) | 1478 |
| BamHI | GGATCC | 1 cut(s) | 1474 |
| BbsI | GAAGAC | 1 cut(s) | 875 |
| Bbv12I | GWGCWC | 4 cut(s) | 52, 341, 937, 1153 |
| BbvI | GCAGC | 1 cut(s) | 9 |
| BccI | CCATC | 4 cut(s) | 650, 956, 1390, 1396 |
| BceAI | ACGGC | 1 cut(s) | 690 |
| BclI | TGATCA | 1 cut(s) | 979 |
| BcoDI | GTCTC | 1 cut(s) | 607 |
| BfaI | CTAG | 4 cut(s) | 150, 354, 1116, 1479 |
| BfrI | CTTAAG | 2 cut(s) | 53, 1186 |
| BisI | GCNGC | 1 cut(s) | 23 |
| BlnI | CCTAGG | 1 cut(s) | 1478 |
| BlsI | GCNGC | 1 cut(s) | 24 |
| BmcAI | AGTACT | 1 cut(s) | 1430 |
| Bme18I | GGWCC | 2 cut(s) | 639, 1526 |
| BmgT120I | GGNCC | 2 cut(s) | 639, 1526 |
| BmiI | GGNNCC | 1 cut(s) | 1476 |
| BmsI | GCATC | 5 cut(s) | 103, 1017, 1128, 1479, 1570 |
| BpiI | GAAGAC | 1 cut(s) | 875 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 267, 299, 879, 911 |
| BpuEI | CTTGAG | 2 cut(s) | 1629, 1691 |
| BsaAI | YACGTR | 2 cut(s) | 1001, 1588 |
| BsaJI | CCNNGG | 1 cut(s) | 1478 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 504, 534, 604, 634 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 749 |
| Bse1I | ACTGG | 2 cut(s) | 765, 1436 |
| BseDI | CCNNGG | 1 cut(s) | 1478 |
| BseGI | GGATG | 2 cut(s) | 1401, 1407 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 749 |
| BseNI | ACTGG | 2 cut(s) | 765, 1436 |
| BseRI | GAGGAG | 2 cut(s) | 120, 729 |
| BseXI | GCAGC | 1 cut(s) | 9 |
| BsgI | GTGCAG | 1 cut(s) | 495 |
| BsiHKAI | GWGCWC | 4 cut(s) | 52, 341, 937, 1153 |
| BslFI | GGGAC | 2 cut(s) | 64, 319 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 749 |
| BsmAI | GTCTC | 1 cut(s) | 607 |
| BsmFI | GGGAC | 2 cut(s) | 64, 319 |
| Bsp1286I | GDGCHC | 4 cut(s) | 52, 341, 937, 1153 |
| Bsp1407I | TGTACA | 1 cut(s) | 127 |
| Bsp143I | GATC | 6 cut(s) | 979, 1245, 1372, 1474, 1603, 1657 |
| BspACI | CCGC | 2 cut(s) | 743, 1393 |
| BspHI | TCATGA | 1 cut(s) | 1386 |
| BspLI | GGNNCC | 1 cut(s) | 1476 |
| BspPI | GGATC | 4 cut(s) | 1380, 1469, 1482, 1598 |
| BspQI | GCTCTTC | 1 cut(s) | 1589 |
| BspTI | CTTAAG | 2 cut(s) | 53, 1186 |
| BsrGI | TGTACA | 1 cut(s) | 127 |
| BsrI | ACTGG | 2 cut(s) | 765, 1436 |
| BssECI | CCNNGG | 1 cut(s) | 1478 |
| BssMI | GATC | 6 cut(s) | 979, 1245, 1372, 1474, 1603, 1657 |
| BssNAI | GTATAC | 1 cut(s) | 1355 |
| BssT1I | CCWWGG | 1 cut(s) | 1478 |
| Bst1107I | GTATAC | 1 cut(s) | 1355 |
| Bst4CI | ACNGT | 2 cut(s) | 178, 538 |
| Bst6I | CTCTTC | 4 cut(s) | 179, 188, 1084, 1589 |
| BstAFI | CTTAAG | 2 cut(s) | 53, 1186 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1108 |
| BstAUI | TGTACA | 1 cut(s) | 127 |
| BstBAI | YACGTR | 2 cut(s) | 1001, 1588 |
| BstC8I | GCNNGC | 1 cut(s) | 255 |
| BstDEI | CTNAG | 3 cut(s) | 393, 826, 873 |
| BstF5I | GGATG | 2 cut(s) | 1401, 1407 |
| BstKTI | GATC | 6 cut(s) | 982, 1248, 1375, 1477, 1606, 1660 |
| BstMAI | GTCTC | 1 cut(s) | 607 |
| BstMBI | GATC | 6 cut(s) | 979, 1245, 1372, 1474, 1603, 1657 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 742, 1108, 1662 |
| BstNSI | RCATGY | 1 cut(s) | 319 |
| BstV1I | GCAGC | 1 cut(s) | 9 |
| BstV2I | GAAGAC | 1 cut(s) | 875 |
| BstX2I | RGATCY | 1 cut(s) | 1474 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1258 |
| BstYI | RGATCY | 1 cut(s) | 1474 |
| BstZ17I | GTATAC | 1 cut(s) | 1355 |
| BtsCI | GGATG | 2 cut(s) | 1401, 1407 |
| BtsI | GCAGTG | 1 cut(s) | 837 |
| BtsIMutI | CAGTG | 2 cut(s) | 758, 837 |
| Cac8I | GCNNGC | 1 cut(s) | 255 |
| CciI | TCATGA | 1 cut(s) | 1386 |
| Cfr13I | GGNCC | 2 cut(s) | 639, 1526 |
| Csp6I | GTAC | 3 cut(s) | 128, 998, 1429 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 253, 288 |
| CviAII | CATG | 6 cut(s) | 316, 446, 548, 920, 1366, 1387 |
| CviQI | GTAC | 3 cut(s) | 128, 998, 1429 |
| DdeI | CTNAG | 3 cut(s) | 393, 826, 873 |
| DpnI | GATC | 6 cut(s) | 981, 1247, 1374, 1476, 1605, 1659 |
| DpnII | GATC | 6 cut(s) | 979, 1245, 1372, 1474, 1603, 1657 |
| DraI | TTTAAA | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 4 cut(s) | 179, 188, 1084, 1589 |
| EarI | CTCTTC | 4 cut(s) | 179, 188, 1084, 1589 |
| EciI | GGCGGA | 1 cut(s) | 1408 |
| Eco130I | CCWWGG | 1 cut(s) | 1478 |
| Eco47I | GGWCC | 2 cut(s) | 639, 1526 |
| EcoRI | GAATTC | 1 cut(s) | 1123 |
| EcoT14I | CCWWGG | 1 cut(s) | 1478 |
| EcoT22I | ATGCAT | 1 cut(s) | 1585 |
| ErhI | CCWWGG | 1 cut(s) | 1478 |
| FaeI | CATG | 6 cut(s) | 319, 449, 551, 923, 1369, 1390 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 567, 599, 600, 632, 866, 898 |
| FaqI | GGGAC | 2 cut(s) | 64, 319 |
| FatI | CATG | 6 cut(s) | 315, 445, 547, 919, 1365, 1386 |
| FauNDI | CATATG | 1 cut(s) | 732 |
| FbaI | TGATCA | 1 cut(s) | 979 |
| FblI | GTMKAC | 1 cut(s) | 1354 |
| Fnu4HI | GCNGC | 1 cut(s) | 23 |
| FokI | GGATG | 2 cut(s) | 1408, 1414 |
| Fsp4HI | GCNGC | 1 cut(s) | 23 |
| FspBI | CTAG | 4 cut(s) | 150, 354, 1116, 1479 |
| GluI | GCNGC | 1 cut(s) | 23 |
| Hin1II | CATG | 6 cut(s) | 319, 449, 551, 923, 1369, 1390 |
| HinfI | GANTC | 9 cut(s) | 77, 293, 689, 848, 912, 1411, 1450, 1532, 1613 |
| HphI | GGTGA | 3 cut(s) | 248, 360, 1240 |
| Hpy166II | GTNNAC | 2 cut(s) | 639, 1355 |
| Hpy188I | TCNGA | 5 cut(s) | 162, 443, 694, 1329, 1438 |
| Hpy188III | TCNNGA | 6 cut(s) | 150, 943, 959, 1293, 1387, 1529 |
| Hpy8I | GTNNAC | 2 cut(s) | 639, 1355 |
| HpyAV | CCTTC | 1 cut(s) | 156 |
| HpyCH4III | ACNGT | 2 cut(s) | 178, 538 |
| HpyCH4IV | ACGT | 5 cut(s) | 385, 1000, 1280, 1562, 1587 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 742, 1108, 1662 |
| HpyF3I | CTNAG | 3 cut(s) | 393, 826, 873 |
| HpySE526I | ACGT | 5 cut(s) | 385, 1000, 1280, 1562, 1587 |
| Hsp92II | CATG | 6 cut(s) | 319, 449, 551, 923, 1369, 1390 |
| Ksp22I | TGATCA | 1 cut(s) | 979 |
| Kzo9I | GATC | 6 cut(s) | 979, 1245, 1372, 1474, 1603, 1657 |
| LguI | GCTCTTC | 1 cut(s) | 1589 |
| LmnI | GCTCC | 1 cut(s) | 275 |
| LpnPI | CCDG | 9 cut(s) | 288, 294, 522, 746, 1227, 1278, 1343, 1417, 1542 |
| Lsp1109I | GCAGC | 1 cut(s) | 9 |
| LweI | GCATC | 5 cut(s) | 103, 1017, 1128, 1479, 1570 |
| MaeI | CTAG | 4 cut(s) | 150, 354, 1116, 1479 |
| MaeII | ACGT | 5 cut(s) | 385, 1000, 1280, 1562, 1587 |
| MaeIII | GTNAC | 3 cut(s) | 318, 1190, 1276 |
| MalI | GATC | 6 cut(s) | 981, 1247, 1374, 1476, 1605, 1659 |
| MboI | GATC | 6 cut(s) | 979, 1245, 1372, 1474, 1603, 1657 |
| MfeI | CAATTG | 1 cut(s) | 975 |
| MflI | RGATCY | 1 cut(s) | 1474 |
| MhlI | GDGCHC | 4 cut(s) | 52, 341, 937, 1153 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 1 cut(s) | 1051 |
| Mph1103I | ATGCAT | 1 cut(s) | 1585 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1334 |
| MslI | CAYNNNNRTG | 1 cut(s) | 750 |
| MspCI | CTTAAG | 2 cut(s) | 53, 1186 |
| MunI | CAATTG | 1 cut(s) | 975 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 742, 1108, 1662 |
| NdeI | CATATG | 1 cut(s) | 732 |
| NdeII | GATC | 6 cut(s) | 979, 1245, 1372, 1474, 1603, 1657 |
| NlaIII | CATG | 6 cut(s) | 319, 449, 551, 923, 1369, 1390 |
| NlaIV | GGNNCC | 1 cut(s) | 1476 |
| NmeAIII | GCCGAG | 1 cut(s) | 1190 |
| NmuCI | GTSAC | 1 cut(s) | 1190 |
| NsiI | ATGCAT | 1 cut(s) | 1585 |
| NspI | RCATGY | 1 cut(s) | 319 |
| OliI | CACNNNNGTG | 1 cut(s) | 750 |
| PagI | TCATGA | 1 cut(s) | 1386 |
| PciSI | GCTCTTC | 1 cut(s) | 1589 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1334 |
| PfeI | GAWTC | 8 cut(s) | 293, 689, 848, 912, 1411, 1450, 1532, 1613 |
| PkrI | GCNGC | 1 cut(s) | 24 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| Ppu21I | YACGTR | 2 cut(s) | 1001, 1588 |
| PsiI | TTATAA | 1 cut(s) | 719 |
| PspN4I | GGNNCC | 1 cut(s) | 1476 |
| PspPI | GGNCC | 2 cut(s) | 639, 1526 |
| PsuI | RGATCY | 1 cut(s) | 1474 |
| RsaI | GTAC | 3 cut(s) | 129, 999, 1430 |
| RsaNI | GTAC | 3 cut(s) | 128, 998, 1429 |
| RseI | CAYNNNNRTG | 1 cut(s) | 750 |
| SapI | GCTCTTC | 1 cut(s) | 1589 |
| SatI | GCNGC | 1 cut(s) | 23 |
| Sau3AI | GATC | 6 cut(s) | 979, 1245, 1372, 1474, 1603, 1657 |
| Sau96I | GGNCC | 2 cut(s) | 639, 1526 |
| ScaI | AGTACT | 1 cut(s) | 1430 |
| SchI | GAGTC | 1 cut(s) | 86 |
| SduI | GDGCHC | 4 cut(s) | 52, 341, 937, 1153 |
| SfaNI | GCATC | 5 cut(s) | 103, 1017, 1128, 1479, 1570 |
| SinI | GGWCC | 2 cut(s) | 639, 1526 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 750 |
| SmlI | CTYRAG | 4 cut(s) | 53, 1186, 1644, 1670 |
| SmoI | CTYRAG | 4 cut(s) | 53, 1186, 1644, 1670 |
| SsiI | CCGC | 2 cut(s) | 743, 1393 |
| SspMI | CTAG | 4 cut(s) | 150, 354, 1116, 1479 |
| StyI | CCWWGG | 1 cut(s) | 1478 |
| TaaI | ACNGT | 2 cut(s) | 178, 538 |
| TaiI | ACGT | 5 cut(s) | 388, 1003, 1283, 1565, 1590 |
| TaqI | TCGA | 2 cut(s) | 1625, 1703 |
| TatI | WGTACW | 2 cut(s) | 127, 1428 |
| TfiI | GAWTC | 8 cut(s) | 293, 689, 848, 912, 1411, 1450, 1532, 1613 |
| TscAI | CASTG | 2 cut(s) | 765, 844 |
| TseFI | GTSAC | 1 cut(s) | 1190 |
| TseI | GCWGC | 1 cut(s) | 22 |
| Tsp45I | GTSAC | 1 cut(s) | 1190 |
| TspDTI | ATGAA | 8 cut(s) | 840, 908, 917, 1190, 1287, 1327, 1375, 1424 |
| TspRI | CASTG | 2 cut(s) | 765, 844 |
| Vha464I | CTTAAG | 2 cut(s) | 53, 1186 |
| VpaK11BI | GGWCC | 2 cut(s) | 639, 1526 |
| XapI | RAATTY | 7 cut(s) | 225, 410, 721, 808, 1123, 1177, 1253 |
| XbaI | TCTAGA | 1 cut(s) | 149 |
| XceI | RCATGY | 1 cut(s) | 319 |
| XmaJI | CCTAGG | 1 cut(s) | 1478 |
| XmiI | GTMKAC | 1 cut(s) | 1354 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1334 |
| XspI | CTAG | 4 cut(s) | 150, 354, 1116, 1479 |
| ZrmI | AGTACT | 1 cut(s) | 1430 |
| Zsp2I | ATGCAT | 1 cut(s) | 1585 |