SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 249 |
| AfaI | GTAC | 2 cut(s) | 153, 389 |
| AgsI | TTSAA | 2 cut(s) | 61, 79 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 205, 237 |
| AluBI | AGCT | 2 cut(s) | 369, 409 |
| AluI | AGCT | 2 cut(s) | 369, 409 |
| Alw21I | GWGCWC | 1 cut(s) | 371 |
| Alw26I | GTCTC | 1 cut(s) | 108 |
| ApoI | RAATTY | 1 cut(s) | 249 |
| AspS9I | GGNCC | 1 cut(s) | 50 |
| AsuHPI | GGTGA | 2 cut(s) | 272, 466 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| BanII | GRGCYC | 1 cut(s) | 371 |
| Bbv12I | GWGCWC | 1 cut(s) | 371 |
| BclI | TGATCA | 1 cut(s) | 456 |
| BcoDI | GTCTC | 1 cut(s) | 108 |
| BfaI | CTAG | 1 cut(s) | 174 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmgT120I | GGNCC | 1 cut(s) | 50 |
| BmsI | GCATC | 1 cut(s) | 127 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 291, 323 |
| BpmI | CTGGAG | 1 cut(s) | 450 |
| BpuEI | CTTGAG | 1 cut(s) | 395 |
| Bse1I | ACTGG | 1 cut(s) | 433 |
| BseMII | CTCAG | 4 cut(s) | 355, 367, 384, 438 |
| BseNI | ACTGG | 1 cut(s) | 433 |
| BseRI | GAGGAG | 1 cut(s) | 144 |
| BsiHKAI | GWGCWC | 1 cut(s) | 371 |
| BslFI | GGGAC | 1 cut(s) | 343 |
| BsmAI | GTCTC | 1 cut(s) | 108 |
| BsmFI | GGGAC | 1 cut(s) | 343 |
| BsmI | GAATGC | 2 cut(s) | 10, 17 |
| Bsp1286I | GDGCHC | 1 cut(s) | 371 |
| Bsp1407I | TGTACA | 1 cut(s) | 151 |
| Bsp143I | GATC | 1 cut(s) | 456 |
| BspCNI | CTCAG | 4 cut(s) | 354, 366, 383, 439 |
| BsrGI | TGTACA | 1 cut(s) | 151 |
| BsrI | ACTGG | 1 cut(s) | 433 |
| BssMI | GATC | 1 cut(s) | 456 |
| Bst4CI | ACNGT | 1 cut(s) | 202 |
| Bst6I | CTCTTC | 2 cut(s) | 203, 212 |
| BstAUI | TGTACA | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 1 cut(s) | 279 |
| BstDEI | CTNAG | 4 cut(s) | 341, 353, 370, 447 |
| BstKTI | GATC | 1 cut(s) | 459 |
| BstMAI | GTCTC | 1 cut(s) | 108 |
| BstMBI | GATC | 1 cut(s) | 456 |
| Cac8I | GCNNGC | 1 cut(s) | 279 |
| Cfr13I | GGNCC | 1 cut(s) | 50 |
| Csp6I | GTAC | 2 cut(s) | 152, 388 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 277, 312 |
| CviAII | CATG | 1 cut(s) | 47 |
| CviJI | RGCY | 5 cut(s) | 64, 235, 369, 379, 409 |
| CviKI_1 | RGCY | 5 cut(s) | 64, 235, 369, 379, 409 |
| CviQI | GTAC | 2 cut(s) | 152, 388 |
| DdeI | CTNAG | 4 cut(s) | 341, 353, 370, 447 |
| DpnI | GATC | 1 cut(s) | 458 |
| DpnII | GATC | 1 cut(s) | 456 |
| DraI | TTTAAA | 1 cut(s) | 93 |
| Eam1104I | CTCTTC | 2 cut(s) | 203, 212 |
| EarI | CTCTTC | 2 cut(s) | 203, 212 |
| Ecl136II | GAGCTC | 1 cut(s) | 369 |
| Eco24I | GRGCYC | 1 cut(s) | 371 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| Eco53kI | GAGCTC | 1 cut(s) | 369 |
| EcoICRI | GAGCTC | 1 cut(s) | 369 |
| EcoT38I | GRGCYC | 1 cut(s) | 371 |
| FaeI | CATG | 1 cut(s) | 50 |
| FaiI | YATR | 7 cut(s) | 48, 67, 69, 71, 113, 269, 443 |
| FaqI | GGGAC | 1 cut(s) | 343 |
| FatI | CATG | 1 cut(s) | 46 |
| FbaI | TGATCA | 1 cut(s) | 456 |
| FriOI | GRGCYC | 1 cut(s) | 371 |
| FspBI | CTAG | 1 cut(s) | 174 |
| GsuI | CTGGAG | 1 cut(s) | 450 |
| Hin1II | CATG | 1 cut(s) | 50 |
| HinfI | GANTC | 3 cut(s) | 101, 317, 349 |
| HphI | GGTGA | 2 cut(s) | 272, 466 |
| Hpy188I | TCNGA | 3 cut(s) | 84, 186, 448 |
| Hpy188III | TCNNGA | 1 cut(s) | 174 |
| HpyAV | CCTTC | 2 cut(s) | 85, 180 |
| HpyCH4III | ACNGT | 1 cut(s) | 202 |
| HpyCH4V | TGCA | 4 cut(s) | 46, 281, 288, 394 |
| HpyF3I | CTNAG | 4 cut(s) | 341, 353, 370, 447 |
| Hsp92II | CATG | 1 cut(s) | 50 |
| Ksp22I | TGATCA | 1 cut(s) | 456 |
| Kzo9I | GATC | 1 cut(s) | 456 |
| LmnI | GCTCC | 2 cut(s) | 299, 366 |
| LpnPI | CCDG | 3 cut(s) | 312, 340, 414 |
| LweI | GCATC | 1 cut(s) | 127 |
| MaeI | CTAG | 1 cut(s) | 174 |
| MalI | GATC | 1 cut(s) | 458 |
| MboI | GATC | 1 cut(s) | 456 |
| MboII | GAAGA | 5 cut(s) | 146, 189, 220, 226, 229 |
| MhlI | GDGCHC | 1 cut(s) | 371 |
| MluCI | AATT | 4 cut(s) | 107, 249, 335, 464 |
| MlyI | GAGTC | 1 cut(s) | 110 |
| MmeI | TCCRAC | 1 cut(s) | 326 |
| MnlI | CCTC | 7 cut(s) | 115, 122, 185, 204, 238, 256, 425 |
| MseI | TTAA | 3 cut(s) | 92, 204, 381 |
| Mva1269I | GAATGC | 2 cut(s) | 10, 17 |
| NdeII | GATC | 1 cut(s) | 456 |
| NlaIII | CATG | 1 cut(s) | 50 |
| PctI | GAATGC | 2 cut(s) | 10, 17 |
| PfeI | GAWTC | 2 cut(s) | 317, 349 |
| PleI | GAGTC | 1 cut(s) | 109 |
| PpsI | GAGTC | 1 cut(s) | 109 |
| Psp124BI | GAGCTC | 1 cut(s) | 371 |
| PspPI | GGNCC | 1 cut(s) | 50 |
| RsaI | GTAC | 2 cut(s) | 153, 389 |
| RsaNI | GTAC | 2 cut(s) | 152, 388 |
| SacI | GAGCTC | 1 cut(s) | 371 |
| SaqAI | TTAA | 3 cut(s) | 92, 204, 381 |
| Sau3AI | GATC | 1 cut(s) | 456 |
| Sau96I | GGNCC | 1 cut(s) | 50 |
| SchI | GAGTC | 1 cut(s) | 110 |
| SduI | GDGCHC | 1 cut(s) | 371 |
| SetI | ASST | 5 cut(s) | 77, 196, 371, 411, 436 |
| SfaNI | GCATC | 1 cut(s) | 127 |
| SinI | GGWCC | 1 cut(s) | 50 |
| SmlI | CTYRAG | 1 cut(s) | 410 |
| SmoI | CTYRAG | 1 cut(s) | 410 |
| Sse9I | AATT | 4 cut(s) | 107, 249, 335, 464 |
| SspMI | CTAG | 1 cut(s) | 174 |
| SstI | GAGCTC | 1 cut(s) | 371 |
| TaaI | ACNGT | 1 cut(s) | 202 |
| TaqI | TCGA | 1 cut(s) | 422 |
| TasI | AATT | 4 cut(s) | 107, 249, 335, 464 |
| TatI | WGTACW | 1 cut(s) | 151 |
| TfiI | GAWTC | 2 cut(s) | 317, 349 |
| Tru1I | TTAA | 3 cut(s) | 92, 204, 381 |
| Tru9I | TTAA | 3 cut(s) | 92, 204, 381 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XapI | RAATTY | 1 cut(s) | 249 |
| XbaI | TCTAGA | 1 cut(s) | 173 |
| XspI | CTAG | 1 cut(s) | 174 |