BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 56 |
| AciI | CCGC | 1 cut(s) | 148 |
| AcuI | CTGAAG | 1 cut(s) | 310 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 31, 87, 329 |
| AflIII | ACRYGT | 1 cut(s) | 69 |
| AgsI | TTSAA | 1 cut(s) | 302 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AluBI | AGCT | 4 cut(s) | 41, 139, 293, 313 |
| AluI | AGCT | 4 cut(s) | 41, 139, 293, 313 |
| ApeKI | GCWGC | 4 cut(s) | 41, 139, 151, 293 |
| AspLEI | GCGC | 1 cut(s) | 56 |
| AsuC2I | CCSGG | 1 cut(s) | 112 |
| BaeGI | GKGCMC | 1 cut(s) | 117 |
| BbvI | GCAGC | 4 cut(s) | 28, 126, 138, 280 |
| BccI | CCATC | 2 cut(s) | 160, 263 |
| BcnI | CCSGG | 1 cut(s) | 112 |
| BfaI | CTAG | 1 cut(s) | 352 |
| BfmI | CTRYAG | 1 cut(s) | 192 |
| BisI | GCNGC | 5 cut(s) | 42, 140, 149, 152, 294 |
| BlsI | GCNGC | 5 cut(s) | 43, 141, 150, 153, 295 |
| Bme1390I | CCNGG | 1 cut(s) | 112 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmrFI | CCNGG | 1 cut(s) | 112 |
| BmsI | GCATC | 1 cut(s) | 115 |
| BpuEI | CTTGAG | 1 cut(s) | 69 |
| BpuMI | CCSGG | 1 cut(s) | 112 |
| BsaAI | YACGTR | 1 cut(s) | 20 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 31, 87, 329 |
| Bse1I | ACTGG | 1 cut(s) | 137 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 31, 87, 329 |
| BseMII | CTCAG | 1 cut(s) | 169 |
| BseNI | ACTGG | 1 cut(s) | 137 |
| BseSI | GKGCMC | 1 cut(s) | 117 |
| BseXI | GCAGC | 4 cut(s) | 28, 126, 138, 280 |
| Bsh1236I | CGCG | 1 cut(s) | 56 |
| BsiSI | CCGG | 1 cut(s) | 111 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 31, 87, 329 |
| Bsp1286I | GDGCHC | 1 cut(s) | 117 |
| BspACI | CCGC | 1 cut(s) | 148 |
| BspCNI | CTCAG | 1 cut(s) | 168 |
| BspFNI | CGCG | 1 cut(s) | 56 |
| BspHI | TCATGA | 2 cut(s) | 265, 282 |
| BspMAI | CTGCAG | 1 cut(s) | 196 |
| BsrI | ACTGG | 1 cut(s) | 137 |
| Bst6I | CTCTTC | 1 cut(s) | 324 |
| BstBAI | YACGTR | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 46 |
| BstDEI | CTNAG | 1 cut(s) | 155 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 29 |
| BstFNI | CGCG | 1 cut(s) | 56 |
| BstHHI | GCGC | 1 cut(s) | 56 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 145, 148 |
| BstSCI | CCNGG | 1 cut(s) | 110 |
| BstSFI | CTRYAG | 1 cut(s) | 192 |
| BstSLI | GKGCMC | 1 cut(s) | 117 |
| BstUI | CGCG | 1 cut(s) | 56 |
| BstV1I | GCAGC | 4 cut(s) | 28, 126, 138, 280 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsI | GCAGTG | 1 cut(s) | 189 |
| BtsIMutI | CAGTG | 3 cut(s) | 163, 189, 334 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 46 |
| CciI | TCATGA | 2 cut(s) | 265, 282 |
| CfoI | GCGC | 1 cut(s) | 56 |
| CseI | GACGC | 2 cut(s) | 37, 45 |
| CviAII | CATG | 3 cut(s) | 203, 266, 283 |
| CviJI | RGCY | 7 cut(s) | 41, 139, 151, 274, 293, 313, 351 |
| CviKI_1 | RGCY | 7 cut(s) | 41, 139, 151, 274, 293, 313, 351 |
| DdeI | CTNAG | 1 cut(s) | 155 |
| DraI | TTTAAA | 1 cut(s) | 309 |
| Eam1104I | CTCTTC | 1 cut(s) | 324 |
| EarI | CTCTTC | 1 cut(s) | 324 |
| Eco57I | CTGAAG | 1 cut(s) | 310 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 29 |
| FaeI | CATG | 3 cut(s) | 206, 269, 286 |
| FaiI | YATR | 8 cut(s) | 38, 99, 144, 175, 204, 225, 267, 284 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 282, 314 |
| FatI | CATG | 3 cut(s) | 202, 265, 282 |
| Fnu4HI | GCNGC | 5 cut(s) | 42, 140, 149, 152, 294 |
| Fsp4HI | GCNGC | 5 cut(s) | 42, 140, 149, 152, 294 |
| FspBI | CTAG | 1 cut(s) | 352 |
| GlaI | GCGC | 1 cut(s) | 55 |
| GluI | GCNGC | 5 cut(s) | 42, 140, 149, 152, 294 |
| HapII | CCGG | 1 cut(s) | 111 |
| HgaI | GACGC | 2 cut(s) | 37, 45 |
| HhaI | GCGC | 1 cut(s) | 56 |
| Hin1II | CATG | 3 cut(s) | 206, 269, 286 |
| Hin6I | GCGC | 1 cut(s) | 54 |
| HinP1I | GCGC | 1 cut(s) | 54 |
| HincII | GTYRAC | 1 cut(s) | 335 |
| HindII | GTYRAC | 1 cut(s) | 335 |
| HindIII | AAGCTT | 1 cut(s) | 311 |
| HinfI | GANTC | 2 cut(s) | 182, 232 |
| HpaII | CCGG | 1 cut(s) | 111 |
| Hpy166II | GTNNAC | 2 cut(s) | 75, 335 |
| Hpy188I | TCNGA | 1 cut(s) | 187 |
| Hpy188III | TCNNGA | 4 cut(s) | 179, 266, 283, 299 |
| Hpy8I | GTNNAC | 2 cut(s) | 75, 335 |
| HpyAV | CCTTC | 2 cut(s) | 230, 334 |
| HpyCH4IV | ACGT | 2 cut(s) | 19, 69 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 142, 194 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 145, 148 |
| HpyF3I | CTNAG | 1 cut(s) | 155 |
| HpySE526I | ACGT | 2 cut(s) | 19, 69 |
| Hsp92II | CATG | 3 cut(s) | 206, 269, 286 |
| HspAI | GCGC | 1 cut(s) | 54 |
| LpnPI | CCDG | 3 cut(s) | 118, 124, 192 |
| Lsp1109I | GCAGC | 4 cut(s) | 28, 126, 138, 280 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeI | CTAG | 1 cut(s) | 352 |
| MaeII | ACGT | 2 cut(s) | 19, 69 |
| MaeIII | GTNAC | 2 cut(s) | 20, 106 |
| MboII | GAAGA | 1 cut(s) | 311 |
| MhlI | GDGCHC | 1 cut(s) | 117 |
| MluCI | AATT | 2 cut(s) | 11, 226 |
| MlyI | GAGTC | 2 cut(s) | 176, 241 |
| MnlI | CCTC | 3 cut(s) | 25, 91, 327 |
| MseI | TTAA | 2 cut(s) | 210, 308 |
| MspI | CCGG | 1 cut(s) | 111 |
| MspR9I | CCNGG | 1 cut(s) | 112 |
| MvnI | CGCG | 1 cut(s) | 56 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 145, 148 |
| NciI | CCSGG | 1 cut(s) | 112 |
| NlaIII | CATG | 3 cut(s) | 206, 269, 286 |
| PagI | TCATGA | 2 cut(s) | 265, 282 |
| PkrI | GCNGC | 5 cut(s) | 43, 141, 150, 153, 295 |
| PleI | GAGTC | 2 cut(s) | 176, 240 |
| PpsI | GAGTC | 2 cut(s) | 176, 240 |
| Ppu21I | YACGTR | 1 cut(s) | 20 |
| PstI | CTGCAG | 1 cut(s) | 196 |
| SaqAI | TTAA | 2 cut(s) | 210, 308 |
| SatI | GCNGC | 5 cut(s) | 42, 140, 149, 152, 294 |
| SchI | GAGTC | 2 cut(s) | 176, 241 |
| ScrFI | CCNGG | 1 cut(s) | 112 |
| SduI | GDGCHC | 1 cut(s) | 117 |
| SetI | ASST | 8 cut(s) | 22, 27, 43, 72, 141, 216, 295, 315 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SfcI | CTRYAG | 1 cut(s) | 192 |
| SmlI | CTYRAG | 1 cut(s) | 84 |
| SmoI | CTYRAG | 1 cut(s) | 84 |
| Sse9I | AATT | 2 cut(s) | 11, 226 |
| SsiI | CCGC | 1 cut(s) | 148 |
| SspMI | CTAG | 1 cut(s) | 352 |
| StyD4I | CCNGG | 1 cut(s) | 110 |
| TaiI | ACGT | 2 cut(s) | 22, 72 |
| TasI | AATT | 2 cut(s) | 11, 226 |
| TauI | GCSGC | 1 cut(s) | 151 |
| Tru1I | TTAA | 2 cut(s) | 210, 308 |
| Tru9I | TTAA | 2 cut(s) | 210, 308 |
| TscAI | CASTG | 3 cut(s) | 163, 196, 334 |
| TseI | GCWGC | 4 cut(s) | 41, 139, 151, 293 |
| TspDTI | ATGAA | 2 cut(s) | 109, 212 |
| TspRI | CASTG | 3 cut(s) | 163, 196, 334 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 29 |
| XspI | CTAG | 1 cut(s) | 352 |