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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 461 |
| AatII | GACGTC | 1 cut(s) | 465 |
| AccBSI | CCGCTC | 1 cut(s) | 304 |
| AciI | CCGC | 2 cut(s) | 304, 549 |
| AclWI | GGATC | 1 cut(s) | 90 |
| AcoI | YGGCCR | 1 cut(s) | 305 |
| AcsI | RAATTY | 3 cut(s) | 67, 73, 133 |
| AcyI | GRCGYC | 2 cut(s) | 462, 537 |
| AfaI | GTAC | 1 cut(s) | 320 |
| AgsI | TTSAA | 2 cut(s) | 50, 273 |
| AluBI | AGCT | 3 cut(s) | 45, 128, 557 |
| AluI | AGCT | 3 cut(s) | 45, 128, 557 |
| Alw26I | GTCTC | 2 cut(s) | 501, 544 |
| AlwI | GGATC | 1 cut(s) | 90 |
| AoxI | GGCC | 1 cut(s) | 305 |
| ApeKI | GCWGC | 1 cut(s) | 242 |
| ApoI | RAATTY | 3 cut(s) | 67, 73, 133 |
| AsuII | TTCGAA | 2 cut(s) | 65, 71 |
| BbsI | GAAGAC | 1 cut(s) | 240 |
| BbvI | GCAGC | 1 cut(s) | 229 |
| BccI | CCATC | 4 cut(s) | 94, 184, 190, 320 |
| BceAI | ACGGC | 1 cut(s) | 526 |
| BcoDI | GTCTC | 2 cut(s) | 501, 544 |
| BfaI | CTAG | 1 cut(s) | 468 |
| BisI | GCNGC | 2 cut(s) | 243, 305 |
| BlsI | GCNGC | 2 cut(s) | 244, 306 |
| BpiI | GAAGAC | 1 cut(s) | 240 |
| BpmI | CTGGAG | 1 cut(s) | 108 |
| Bpu14I | TTCGAA | 2 cut(s) | 65, 71 |
| BsaHI | GRCGYC | 2 cut(s) | 462, 537 |
| BsaWI | WCCGGW | 1 cut(s) | 503 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 163, 193, 379, 409 |
| Bse118I | RCCGGY | 1 cut(s) | 307 |
| Bse1I | ACTGG | 3 cut(s) | 161, 490, 538 |
| BseGI | GGATG | 2 cut(s) | 141, 194 |
| BseNI | ACTGG | 3 cut(s) | 161, 490, 538 |
| BseX3I | CGGCCG | 1 cut(s) | 305 |
| BseXI | GCAGC | 1 cut(s) | 229 |
| BseYI | CCCAGC | 1 cut(s) | 424 |
| Bsh1285I | CGRYCG | 1 cut(s) | 308 |
| BshFI | GGCC | 1 cut(s) | 307 |
| BsiEI | CGRYCG | 1 cut(s) | 308 |
| BsiSI | CCGG | 2 cut(s) | 308, 504 |
| BslFI | GGGAC | 1 cut(s) | 449 |
| BsmAI | GTCTC | 2 cut(s) | 501, 544 |
| BsmBI | CGTCTC | 2 cut(s) | 501, 544 |
| BsmFI | GGGAC | 1 cut(s) | 449 |
| BsnI | GGCC | 1 cut(s) | 307 |
| Bsp119I | TTCGAA | 2 cut(s) | 65, 71 |
| Bsp143I | GATC | 2 cut(s) | 82, 221 |
| BspACI | CCGC | 2 cut(s) | 304, 549 |
| BspANI | GGCC | 1 cut(s) | 307 |
| BspCNI | CTCAG | 1 cut(s) | 585 |
| BspPI | GGATC | 1 cut(s) | 90 |
| BspT104I | TTCGAA | 2 cut(s) | 65, 71 |
| BsrBI | CCGCTC | 1 cut(s) | 304 |
| BsrFI | RCCGGY | 1 cut(s) | 307 |
| BsrI | ACTGG | 3 cut(s) | 161, 490, 538 |
| BssAI | RCCGGY | 1 cut(s) | 307 |
| BssMI | GATC | 2 cut(s) | 82, 221 |
| BssNI | GRCGYC | 2 cut(s) | 462, 537 |
| Bst4CI | ACNGT | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 1 cut(s) | 224 |
| BstACI | GRCGYC | 2 cut(s) | 462, 537 |
| BstBI | TTCGAA | 2 cut(s) | 65, 71 |
| BstDEI | CTNAG | 1 cut(s) | 572 |
| BstF5I | GGATG | 2 cut(s) | 141, 194 |
| BstKTI | GATC | 2 cut(s) | 85, 224 |
| BstMAI | GTCTC | 2 cut(s) | 501, 544 |
| BstMBI | GATC | 2 cut(s) | 82, 221 |
| BstMCI | CGRYCG | 1 cut(s) | 308 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 434 |
| BstV1I | GCAGC | 1 cut(s) | 229 |
| BstV2I | GAAGAC | 1 cut(s) | 240 |
| BstZI | CGGCCG | 1 cut(s) | 305 |
| BsuRI | GGCC | 1 cut(s) | 307 |
| BtsCI | GGATG | 2 cut(s) | 141, 194 |
| BtsIMutI | CAGTG | 2 cut(s) | 450, 531 |
| Cfr10I | RCCGGY | 1 cut(s) | 307 |
| CseI | GACGC | 2 cut(s) | 234, 526 |
| Csp6I | GTAC | 1 cut(s) | 319 |
| CviAII | CATG | 1 cut(s) | 190 |
| CviJI | RGCY | 6 cut(s) | 45, 128, 307, 337, 428, 557 |
| CviKI_1 | RGCY | 6 cut(s) | 45, 128, 307, 337, 428, 557 |
| CviQI | GTAC | 1 cut(s) | 319 |
| DdeI | CTNAG | 1 cut(s) | 572 |
| DpnI | GATC | 2 cut(s) | 84, 223 |
| DpnII | GATC | 2 cut(s) | 82, 221 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 461 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 461 |
| EaeI | YGGCCR | 1 cut(s) | 305 |
| EagI | CGGCCG | 1 cut(s) | 305 |
| Eam1104I | CTCTTC | 1 cut(s) | 224 |
| EarI | CTCTTC | 1 cut(s) | 224 |
| EclXI | CGGCCG | 1 cut(s) | 305 |
| Eco52I | CGGCCG | 1 cut(s) | 305 |
| EcoRI | GAATTC | 2 cut(s) | 67, 73 |
| Esp3I | CGTCTC | 2 cut(s) | 501, 544 |
| FaeI | CATG | 1 cut(s) | 193 |
| FaiI | YATR | 6 cut(s) | 191, 280, 291, 315, 476, 515 |
| FaqI | GGGAC | 1 cut(s) | 449 |
| FatI | CATG | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 2 cut(s) | 243, 305 |
| FokI | GGATG | 2 cut(s) | 128, 181 |
| Fsp4HI | GCNGC | 2 cut(s) | 243, 305 |
| FspBI | CTAG | 1 cut(s) | 468 |
| GluI | GCNGC | 2 cut(s) | 243, 305 |
| GsaI | CCCAGC | 1 cut(s) | 428 |
| GsuI | CTGGAG | 1 cut(s) | 108 |
| HaeIII | GGCC | 1 cut(s) | 307 |
| HapII | CCGG | 2 cut(s) | 308, 504 |
| HgaI | GACGC | 2 cut(s) | 234, 526 |
| Hin1I | GRCGYC | 2 cut(s) | 462, 537 |
| Hin1II | CATG | 1 cut(s) | 193 |
| HindIII | AAGCTT | 1 cut(s) | 43 |
| HinfI | GANTC | 4 cut(s) | 35, 56, 110, 116 |
| HpaII | CCGG | 2 cut(s) | 308, 504 |
| Hpy188I | TCNGA | 4 cut(s) | 40, 79, 115, 499 |
| Hpy188III | TCNNGA | 1 cut(s) | 261 |
| Hpy99I | CGWCG | 2 cut(s) | 461, 464 |
| HpyAV | CCTTC | 1 cut(s) | 408 |
| HpyCH4III | ACNGT | 1 cut(s) | 25 |
| HpyCH4IV | ACGT | 1 cut(s) | 462 |
| HpyCH4V | TGCA | 1 cut(s) | 149 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 434 |
| HpyF3I | CTNAG | 1 cut(s) | 572 |
| HpySE526I | ACGT | 1 cut(s) | 462 |
| Hsp92I | GRCGYC | 2 cut(s) | 462, 537 |
| Hsp92II | CATG | 1 cut(s) | 193 |
| Kzo9I | GATC | 2 cut(s) | 82, 221 |
| LmnI | GCTCC | 2 cut(s) | 127, 283 |
| Lsp1109I | GCAGC | 1 cut(s) | 229 |
| MaeI | CTAG | 1 cut(s) | 468 |
| MaeII | ACGT | 1 cut(s) | 462 |
| MalI | GATC | 2 cut(s) | 84, 223 |
| MbiI | CCGCTC | 1 cut(s) | 304 |
| MboI | GATC | 2 cut(s) | 82, 221 |
| MboII | GAAGA | 5 cut(s) | 240, 241, 343, 384, 393 |
| MluCI | AATT | 5 cut(s) | 61, 67, 73, 133, 492 |
| MmeI | TCCRAC | 1 cut(s) | 522 |
| MnlI | CCTC | 5 cut(s) | 73, 97, 149, 219, 573 |
| MseI | TTAA | 1 cut(s) | 420 |
| MspA1I | CMGCKG | 2 cut(s) | 128, 549 |
| MspI | CCGG | 2 cut(s) | 308, 504 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 434 |
| NdeII | GATC | 2 cut(s) | 82, 221 |
| NlaIII | CATG | 1 cut(s) | 193 |
| NspV | TTCGAA | 2 cut(s) | 65, 71 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 242 |
| PfeI | GAWTC | 4 cut(s) | 35, 56, 110, 116 |
| PflFI | GACNNNGTC | 1 cut(s) | 461 |
| PkrI | GCNGC | 2 cut(s) | 244, 306 |
| PspFI | CCCAGC | 1 cut(s) | 424 |
| PsyI | GACNNNGTC | 1 cut(s) | 461 |
| PvuII | CAGCTG | 1 cut(s) | 128 |
| RsaI | GTAC | 1 cut(s) | 320 |
| RsaNI | GTAC | 1 cut(s) | 319 |
| SaqAI | TTAA | 1 cut(s) | 420 |
| SatI | GCNGC | 2 cut(s) | 243, 305 |
| Sau3AI | GATC | 2 cut(s) | 82, 221 |
| SetI | ASST | 7 cut(s) | 47, 108, 130, 361, 366, 465, 559 |
| SfuI | TTCGAA | 2 cut(s) | 65, 71 |
| Sse9I | AATT | 5 cut(s) | 61, 67, 73, 133, 492 |
| SsiI | CCGC | 2 cut(s) | 304, 549 |
| SspMI | CTAG | 1 cut(s) | 468 |
| TaaI | ACNGT | 1 cut(s) | 25 |
| TaiI | ACGT | 1 cut(s) | 465 |
| TaqI | TCGA | 6 cut(s) | 27, 54, 65, 71, 98, 224 |
| TasI | AATT | 5 cut(s) | 61, 67, 73, 133, 492 |
| TatI | WGTACW | 1 cut(s) | 318 |
| TauI | GCSGC | 1 cut(s) | 307 |
| TfiI | GAWTC | 4 cut(s) | 35, 56, 110, 116 |
| Tru1I | TTAA | 1 cut(s) | 420 |
| Tru9I | TTAA | 1 cut(s) | 420 |
| TscAI | CASTG | 2 cut(s) | 457, 538 |
| TseI | GCWGC | 1 cut(s) | 242 |
| TspDTI | ATGAA | 1 cut(s) | 240 |
| TspRI | CASTG | 2 cut(s) | 457, 538 |
| Tth111I | GACNNNGTC | 1 cut(s) | 461 |
| XapI | RAATTY | 3 cut(s) | 67, 73, 133 |
| XspI | CTAG | 1 cut(s) | 468 |
| ZraI | GACGTC | 1 cut(s) | 463 |