BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1051 |
| Acc65I | GGTACC | 1 cut(s) | 1677 |
| AccB1I | GGYRCC | 2 cut(s) | 1511, 1677 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1110 |
| AccBSI | CCGCTC | 1 cut(s) | 471 |
| AccII | CGCG | 2 cut(s) | 1026, 1545 |
| AciI | CCGC | 3 cut(s) | 84, 469, 1630 |
| AclWI | GGATC | 6 cut(s) | 476, 489, 1148, 1161, 1264, 1621 |
| AcoI | YGGCCR | 1 cut(s) | 1101 |
| AcsI | RAATTY | 5 cut(s) | 110, 176, 332, 343, 1181 |
| AcuI | CTGAAG | 2 cut(s) | 507, 851 |
| AcvI | CACGTG | 1 cut(s) | 682 |
| AfaI | GTAC | 5 cut(s) | 386, 459, 1666, 1679, 1697 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 127, 370, 1110, 1533, 1605 |
| AgeI | ACCGGT | 1 cut(s) | 1508 |
| AhlI | ACTAGT | 1 cut(s) | 587 |
| AjnI | CCWGG | 2 cut(s) | 1349, 1532 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1106, 1138, 1611, 1643 |
| AluBI | AGCT | 3 cut(s) | 835, 1229, 1674 |
| AluI | AGCT | 3 cut(s) | 835, 1229, 1674 |
| Alw21I | GWGCWC | 1 cut(s) | 1687 |
| Alw26I | GTCTC | 2 cut(s) | 968, 1283 |
| Alw44I | GTGCAC | 1 cut(s) | 1683 |
| AlwI | GGATC | 6 cut(s) | 476, 489, 1148, 1161, 1264, 1621 |
| AoxI | GGCC | 3 cut(s) | 1083, 1101, 1607 |
| ApaLI | GTGCAC | 1 cut(s) | 1683 |
| ApeKI | GCWGC | 1 cut(s) | 1145 |
| ApoI | RAATTY | 5 cut(s) | 110, 176, 332, 343, 1181 |
| AseI | ATTAAT | 1 cut(s) | 261 |
| AsiGI | ACCGGT | 1 cut(s) | 1508 |
| Asp718I | GGTACC | 1 cut(s) | 1677 |
| AsuHPI | GGTGA | 5 cut(s) | 119, 352, 707, 1001, 1217 |
| BaeGI | GKGCMC | 1 cut(s) | 1687 |
| BalI | TGGCCA | 1 cut(s) | 1103 |
| BamHI | GGATCC | 2 cut(s) | 481, 1153 |
| BanI | GGYRCC | 2 cut(s) | 1511, 1677 |
| BbrPI | CACGTG | 1 cut(s) | 682 |
| BbsI | GAAGAC | 1 cut(s) | 762 |
| Bbv12I | GWGCWC | 1 cut(s) | 1687 |
| BbvI | GCAGC | 1 cut(s) | 1157 |
| BccI | CCATC | 4 cut(s) | 202, 901, 1052, 1531 |
| BciT130I | CCWGG | 2 cut(s) | 1351, 1534 |
| BciVI | GTATCC | 1 cut(s) | 1530 |
| BclI | TGATCA | 1 cut(s) | 64 |
| BcoDI | GTCTC | 2 cut(s) | 968, 1283 |
| BcuI | ACTAGT | 1 cut(s) | 587 |
| BfaI | CTAG | 1 cut(s) | 588 |
| BfmI | CTRYAG | 2 cut(s) | 818, 1143 |
| BfuI | GTATCC | 1 cut(s) | 1530 |
| BisI | GCNGC | 1 cut(s) | 1146 |
| BlsI | GCNGC | 1 cut(s) | 1147 |
| BmcAI | AGTACT | 2 cut(s) | 386, 1697 |
| Bme1390I | CCNGG | 2 cut(s) | 1351, 1534 |
| BmiI | GGNNCC | 6 cut(s) | 198, 483, 1155, 1240, 1513, 1679 |
| BmrFI | CCNGG | 2 cut(s) | 1351, 1534 |
| BmrI | ACTGGG | 1 cut(s) | 83 |
| BmsI | GCATC | 5 cut(s) | 208, 1038, 1198, 1249, 1576 |
| BmuI | ACTGGG | 1 cut(s) | 83 |
| BpiI | GAAGAC | 1 cut(s) | 762 |
| BpmI | CTGGAG | 2 cut(s) | 392, 1516 |
| BsaAI | YACGTR | 2 cut(s) | 242, 682 |
| BsaI | GGTCTC | 1 cut(s) | 1283 |
| BsaJI | CCNNGG | 6 cut(s) | 631, 1080, 1157, 1349, 1466, 1604 |
| BsaWI | WCCGGW | 1 cut(s) | 1508 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 127, 370, 1110, 1533, 1605 |
| Bse118I | RCCGGY | 1 cut(s) | 1508 |
| Bse1I | ACTGG | 4 cut(s) | 78, 121, 1393, 1610 |
| Bse3DI | GCAATG | 2 cut(s) | 138, 645 |
| BseBI | CCWGG | 2 cut(s) | 1351, 1534 |
| BseDI | CCNNGG | 6 cut(s) | 631, 1080, 1157, 1349, 1466, 1604 |
| BseGI | GGATG | 2 cut(s) | 1120, 1542 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 127, 370, 1110, 1533, 1605 |
| BseMI | GCAATG | 2 cut(s) | 138, 645 |
| BseNI | ACTGG | 4 cut(s) | 78, 121, 1393, 1610 |
| BseRI | GAGGAG | 1 cut(s) | 63 |
| BseSI | GKGCMC | 1 cut(s) | 1687 |
| BseXI | GCAGC | 1 cut(s) | 1157 |
| BsgI | GTGCAG | 1 cut(s) | 737 |
| Bsh1236I | CGCG | 2 cut(s) | 1026, 1545 |
| BshFI | GGCC | 3 cut(s) | 1085, 1103, 1609 |
| BshNI | GGYRCC | 2 cut(s) | 1511, 1677 |
| BshTI | ACCGGT | 1 cut(s) | 1508 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1687 |
| BsiSI | CCGG | 2 cut(s) | 1509, 1640 |
| BslFI | GGGAC | 2 cut(s) | 92, 366 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 127, 370, 1110, 1533, 1605 |
| BsmAI | GTCTC | 2 cut(s) | 968, 1283 |
| BsmFI | GGGAC | 2 cut(s) | 92, 366 |
| BsmI | GAATGC | 3 cut(s) | 296, 1398, 1589 |
| BsnI | GGCC | 3 cut(s) | 1085, 1103, 1609 |
| Bso31I | GGTCTC | 1 cut(s) | 1283 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1687 |
| Bsp1407I | TGTACA | 1 cut(s) | 1664 |
| Bsp143I | GATC | 6 cut(s) | 64, 481, 814, 1153, 1269, 1626 |
| Bsp19I | CCATGG | 1 cut(s) | 1466 |
| Bsp68I | TCGCGA | 1 cut(s) | 1026 |
| BspACI | CCGC | 3 cut(s) | 84, 469, 1630 |
| BspANI | GGCC | 3 cut(s) | 1085, 1103, 1609 |
| BspFNI | CGCG | 2 cut(s) | 1026, 1545 |
| BspHI | TCATGA | 1 cut(s) | 1015 |
| BspLI | GGNNCC | 6 cut(s) | 198, 483, 1155, 1240, 1513, 1679 |
| BspMAI | CTGCAG | 1 cut(s) | 1147 |
| BspPI | GGATC | 6 cut(s) | 476, 489, 1148, 1161, 1264, 1621 |
| BspT107I | GGYRCC | 2 cut(s) | 1511, 1677 |
| BspTNI | GGTCTC | 1 cut(s) | 1283 |
| BsrBI | CCGCTC | 1 cut(s) | 471 |
| BsrDI | GCAATG | 2 cut(s) | 138, 645 |
| BsrFI | RCCGGY | 1 cut(s) | 1508 |
| BsrGI | TGTACA | 1 cut(s) | 1664 |
| BsrI | ACTGG | 4 cut(s) | 78, 121, 1393, 1610 |
| BssAI | RCCGGY | 1 cut(s) | 1508 |
| BssECI | CCNNGG | 6 cut(s) | 631, 1080, 1157, 1349, 1466, 1604 |
| BssMI | GATC | 6 cut(s) | 64, 481, 814, 1153, 1269, 1626 |
| BssT1I | CCWWGG | 3 cut(s) | 631, 1466, 1604 |
| Bst2UI | CCWGG | 2 cut(s) | 1351, 1534 |
| Bst4CI | ACNGT | 3 cut(s) | 398, 1254, 1682 |
| Bst6I | CTCTTC | 1 cut(s) | 18 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1142 |
| BstAUI | TGTACA | 1 cut(s) | 1664 |
| BstBAI | YACGTR | 2 cut(s) | 242, 682 |
| BstC8I | GCNNGC | 2 cut(s) | 825, 1543 |
| BstDEI | CTNAG | 2 cut(s) | 204, 1645 |
| BstDSI | CCRYGG | 1 cut(s) | 1466 |
| BstF5I | GGATG | 2 cut(s) | 1120, 1542 |
| BstFNI | CGCG | 2 cut(s) | 1026, 1545 |
| BstKTI | GATC | 6 cut(s) | 67, 484, 817, 1156, 1272, 1629 |
| BstMAI | GTCTC | 2 cut(s) | 968, 1283 |
| BstMBI | GATC | 6 cut(s) | 64, 481, 814, 1153, 1269, 1626 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1142 |
| BstNI | CCWGG | 2 cut(s) | 1351, 1534 |
| BstSCI | CCNGG | 2 cut(s) | 1349, 1532 |
| BstSFI | CTRYAG | 2 cut(s) | 818, 1143 |
| BstSLI | GKGCMC | 1 cut(s) | 1687 |
| BstUI | CGCG | 2 cut(s) | 1026, 1545 |
| BstV1I | GCAGC | 1 cut(s) | 1157 |
| BstV2I | GAAGAC | 1 cut(s) | 762 |
| BstX2I | RGATCY | 2 cut(s) | 481, 1153 |
| BstYI | RGATCY | 2 cut(s) | 481, 1153 |
| BsuI | GTATCC | 1 cut(s) | 1530 |
| BsuRI | GGCC | 3 cut(s) | 1085, 1103, 1609 |
| BtgI | CCRYGG | 1 cut(s) | 1466 |
| BtgZI | GCGATG | 1 cut(s) | 111 |
| BtsCI | GGATG | 2 cut(s) | 1120, 1542 |
| BtsI | GCAGTG | 1 cut(s) | 607 |
| BtsIMutI | CAGTG | 3 cut(s) | 607, 1400, 1685 |
| BtuMI | TCGCGA | 1 cut(s) | 1026 |
| Cac8I | GCNNGC | 2 cut(s) | 825, 1543 |
| CciI | TCATGA | 1 cut(s) | 1015 |
| Cfr10I | RCCGGY | 1 cut(s) | 1508 |
| CseI | GACGC | 1 cut(s) | 259 |
| Csp6I | GTAC | 5 cut(s) | 385, 458, 1665, 1678, 1696 |
| CspAI | ACCGGT | 1 cut(s) | 1508 |
| CviAII | CATG | 5 cut(s) | 888, 1016, 1087, 1467, 1624 |
| CviQI | GTAC | 5 cut(s) | 385, 458, 1665, 1678, 1696 |
| DdeI | CTNAG | 2 cut(s) | 204, 1645 |
| DpnI | GATC | 6 cut(s) | 66, 483, 816, 1155, 1271, 1628 |
| DpnII | GATC | 6 cut(s) | 64, 481, 814, 1153, 1269, 1626 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1051 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1051 |
| EaeI | YGGCCR | 1 cut(s) | 1101 |
| Eam1104I | CTCTTC | 1 cut(s) | 18 |
| EarI | CTCTTC | 1 cut(s) | 18 |
| Eco130I | CCWWGG | 3 cut(s) | 631, 1466, 1604 |
| Eco31I | GGTCTC | 1 cut(s) | 1283 |
| Eco32I | GATATC | 1 cut(s) | 745 |
| Eco57I | CTGAAG | 2 cut(s) | 507, 851 |
| Eco72I | CACGTG | 1 cut(s) | 682 |
| EcoRI | GAATTC | 1 cut(s) | 332 |
| EcoRII | CCWGG | 2 cut(s) | 1349, 1532 |
| EcoRV | GATATC | 1 cut(s) | 745 |
| EcoT14I | CCWWGG | 3 cut(s) | 631, 1466, 1604 |
| EcoT22I | ATGCAT | 3 cut(s) | 1264, 1591, 1657 |
| ErhI | CCWWGG | 3 cut(s) | 631, 1466, 1604 |
| FaeI | CATG | 5 cut(s) | 891, 1019, 1090, 1470, 1627 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1277, 1309, 1628, 1660 |
| FaqI | GGGAC | 2 cut(s) | 92, 366 |
| FatI | CATG | 5 cut(s) | 887, 1015, 1086, 1466, 1623 |
| FauNDI | CATATG | 2 cut(s) | 1264, 1582 |
| FbaI | TGATCA | 1 cut(s) | 64 |
| Fnu4HI | GCNGC | 1 cut(s) | 1146 |
| FokI | GGATG | 2 cut(s) | 1127, 1549 |
| Fsp4HI | GCNGC | 1 cut(s) | 1146 |
| FspBI | CTAG | 1 cut(s) | 588 |
| GluI | GCNGC | 1 cut(s) | 1146 |
| GsuI | CTGGAG | 2 cut(s) | 392, 1516 |
| HaeIII | GGCC | 3 cut(s) | 1085, 1103, 1609 |
| HapII | CCGG | 2 cut(s) | 1509, 1640 |
| HgaI | GACGC | 1 cut(s) | 259 |
| Hin1II | CATG | 5 cut(s) | 891, 1019, 1090, 1470, 1627 |
| HinfI | GANTC | 7 cut(s) | 26, 799, 1304, 1319, 1325, 1337, 1471 |
| HpaII | CCGG | 2 cut(s) | 1509, 1640 |
| HphI | GGTGA | 5 cut(s) | 119, 352, 707, 1001, 1217 |
| Hpy166II | GTNNAC | 3 cut(s) | 1665, 1667, 1685 |
| Hpy188III | TCNNGA | 9 cut(s) | 68, 371, 485, 518, 899, 1016, 1025, 1069, 1280 |
| Hpy8I | GTNNAC | 3 cut(s) | 1665, 1667, 1685 |
| Hpy99I | CGWCG | 1 cut(s) | 675 |
| HpyAV | CCTTC | 5 cut(s) | 127, 425, 914, 1022, 1325 |
| HpyCH4III | ACNGT | 3 cut(s) | 398, 1254, 1682 |
| HpyCH4IV | ACGT | 2 cut(s) | 241, 681 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1142 |
| HpyF3I | CTNAG | 2 cut(s) | 204, 1645 |
| HpySE526I | ACGT | 2 cut(s) | 241, 681 |
| Hsp92II | CATG | 5 cut(s) | 891, 1019, 1090, 1470, 1627 |
| KpnI | GGTACC | 1 cut(s) | 1681 |
| Ksp22I | TGATCA | 1 cut(s) | 64 |
| Kzo9I | GATC | 6 cut(s) | 64, 481, 814, 1153, 1269, 1626 |
| LmnI | GCTCC | 2 cut(s) | 942, 1238 |
| Lsp1109I | GCAGC | 1 cut(s) | 1157 |
| LweI | GCATC | 5 cut(s) | 208, 1038, 1198, 1249, 1576 |
| MaeI | CTAG | 1 cut(s) | 588 |
| MaeII | ACGT | 2 cut(s) | 241, 681 |
| MaeIII | GTNAC | 1 cut(s) | 89 |
| MalI | GATC | 6 cut(s) | 66, 483, 816, 1155, 1271, 1628 |
| MbiI | CCGCTC | 1 cut(s) | 471 |
| MboI | GATC | 6 cut(s) | 64, 481, 814, 1153, 1269, 1626 |
| MflI | RGATCY | 2 cut(s) | 481, 1153 |
| MhlI | GDGCHC | 1 cut(s) | 1687 |
| MlsI | TGGCCA | 1 cut(s) | 1103 |
| MluNI | TGGCCA | 1 cut(s) | 1103 |
| MlyI | GAGTC | 1 cut(s) | 1480 |
| MmeI | TCCRAC | 3 cut(s) | 105, 1071, 1416 |
| Mox20I | TGGCCA | 1 cut(s) | 1103 |
| Mph1103I | ATGCAT | 3 cut(s) | 1264, 1591, 1657 |
| MscI | TGGCCA | 1 cut(s) | 1103 |
| MseI | TTAA | 7 cut(s) | 249, 261, 327, 558, 738, 1164, 1200 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1014, 1660 |
| Msp20I | TGGCCA | 1 cut(s) | 1103 |
| MspA1I | CMGCKG | 1 cut(s) | 84 |
| MspI | CCGG | 2 cut(s) | 1509, 1640 |
| MspR9I | CCNGG | 2 cut(s) | 1351, 1534 |
| Mva1269I | GAATGC | 3 cut(s) | 296, 1398, 1589 |
| MvaI | CCWGG | 2 cut(s) | 1351, 1534 |
| MvnI | CGCG | 2 cut(s) | 1026, 1545 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1142 |
| NcoI | CCATGG | 1 cut(s) | 1466 |
| NdeI | CATATG | 2 cut(s) | 1264, 1582 |
| NdeII | GATC | 6 cut(s) | 64, 481, 814, 1153, 1269, 1626 |
| NlaIII | CATG | 5 cut(s) | 891, 1019, 1090, 1470, 1627 |
| NlaIV | GGNNCC | 6 cut(s) | 198, 483, 1155, 1240, 1513, 1679 |
| NmeAIII | GCCGAG | 1 cut(s) | 1105 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| NruI | TCGCGA | 1 cut(s) | 1026 |
| NsiI | ATGCAT | 3 cut(s) | 1264, 1591, 1657 |
| PagI | TCATGA | 1 cut(s) | 1015 |
| PctI | GAATGC | 3 cut(s) | 296, 1398, 1589 |
| PfeI | GAWTC | 6 cut(s) | 26, 799, 1304, 1319, 1325, 1337 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1110 |
| PfoI | TCCNGGA | 1 cut(s) | 1532 |
| PinAI | ACCGGT | 1 cut(s) | 1508 |
| PkrI | GCNGC | 1 cut(s) | 1147 |
| PleI | GAGTC | 1 cut(s) | 1479 |
| PmaCI | CACGTG | 1 cut(s) | 682 |
| PmlI | CACGTG | 1 cut(s) | 682 |
| PpsI | GAGTC | 1 cut(s) | 1479 |
| Ppu21I | YACGTR | 2 cut(s) | 242, 682 |
| PshBI | ATTAAT | 1 cut(s) | 261 |
| Psp6I | CCWGG | 2 cut(s) | 1349, 1532 |
| PspCI | CACGTG | 1 cut(s) | 682 |
| PspGI | CCWGG | 2 cut(s) | 1349, 1532 |
| PspN4I | GGNNCC | 6 cut(s) | 198, 483, 1155, 1240, 1513, 1679 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1446, 1478 |
| PstI | CTGCAG | 1 cut(s) | 1147 |
| PsuI | RGATCY | 2 cut(s) | 481, 1153 |
| RruI | TCGCGA | 1 cut(s) | 1026 |
| RsaI | GTAC | 5 cut(s) | 386, 459, 1666, 1679, 1697 |
| RsaNI | GTAC | 5 cut(s) | 385, 458, 1665, 1678, 1696 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1014, 1660 |
| SaqAI | TTAA | 7 cut(s) | 249, 261, 327, 558, 738, 1164, 1200 |
| SatI | GCNGC | 1 cut(s) | 1146 |
| Sau3AI | GATC | 6 cut(s) | 64, 481, 814, 1153, 1269, 1626 |
| ScaI | AGTACT | 2 cut(s) | 386, 1697 |
| SchI | GAGTC | 1 cut(s) | 1480 |
| ScrFI | CCNGG | 2 cut(s) | 1351, 1534 |
| SduI | GDGCHC | 1 cut(s) | 1687 |
| SfaNI | GCATC | 5 cut(s) | 208, 1038, 1198, 1249, 1576 |
| SfcI | CTRYAG | 2 cut(s) | 818, 1143 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1508 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1014, 1660 |
| SpeI | ACTAGT | 1 cut(s) | 587 |
| SsiI | CCGC | 3 cut(s) | 84, 469, 1630 |
| SspI | AATATT | 1 cut(s) | 265 |
| SspMI | CTAG | 1 cut(s) | 588 |
| StyD4I | CCNGG | 2 cut(s) | 1349, 1532 |
| StyI | CCWWGG | 3 cut(s) | 631, 1466, 1604 |
| TaaI | ACNGT | 3 cut(s) | 398, 1254, 1682 |
| TaiI | ACGT | 2 cut(s) | 244, 684 |
| TaqI | TCGA | 4 cut(s) | 517, 750, 760, 1406 |
| TatI | WGTACW | 3 cut(s) | 384, 1664, 1695 |
| TfiI | GAWTC | 6 cut(s) | 26, 799, 1304, 1319, 1325, 1337 |
| Tru1I | TTAA | 7 cut(s) | 249, 261, 327, 558, 738, 1164, 1200 |
| Tru9I | TTAA | 7 cut(s) | 249, 261, 327, 558, 738, 1164, 1200 |
| TscAI | CASTG | 3 cut(s) | 607, 1400, 1692 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| TseI | GCWGC | 1 cut(s) | 1145 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspGWI | ACGGA | 1 cut(s) | 58 |
| TspRI | CASTG | 3 cut(s) | 607, 1400, 1692 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1110 |
| VneI | GTGCAC | 1 cut(s) | 1683 |
| VspI | ATTAAT | 1 cut(s) | 261 |
| XapI | RAATTY | 5 cut(s) | 110, 176, 332, 343, 1181 |
| XspI | CTAG | 1 cut(s) | 588 |
| ZrmI | AGTACT | 2 cut(s) | 386, 1697 |
| Zsp2I | ATGCAT | 3 cut(s) | 1264, 1591, 1657 |