Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 12 - 117 | 2.2e-08 | hAT-like transposase, RNase-H fold |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 164 |
| AflII | CTTAAG | 1 cut(s) | 358 |
| AgsI | TTSAA | 3 cut(s) | 265, 396, 487 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 467, 499 |
| AluBI | AGCT | 6 cut(s) | 62, 89, 148, 295, 346, 432 |
| AluI | AGCT | 6 cut(s) | 62, 89, 148, 295, 346, 432 |
| Alw21I | GWGCWC | 1 cut(s) | 297 |
| AoxI | GGCC | 2 cut(s) | 321, 327 |
| ApeKI | GCWGC | 2 cut(s) | 432, 447 |
| AsuHPI | GGTGA | 3 cut(s) | 44, 178, 269 |
| BanII | GRGCYC | 1 cut(s) | 297 |
| Bbv12I | GWGCWC | 1 cut(s) | 297 |
| BbvI | GCAGC | 2 cut(s) | 419, 459 |
| BccI | CCATC | 2 cut(s) | 122, 154 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 536 |
| BfaI | CTAG | 3 cut(s) | 402, 411, 444 |
| BfrI | CTTAAG | 1 cut(s) | 358 |
| BisI | GCNGC | 2 cut(s) | 433, 448 |
| BlsI | GCNGC | 2 cut(s) | 434, 449 |
| BmsI | GCATC | 1 cut(s) | 88 |
| BsaBI | GATNNNNATC | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 2 cut(s) | 237, 324 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 406, 436 |
| Bse3DI | GCAATG | 1 cut(s) | 391 |
| Bse8I | GATNNNNATC | 1 cut(s) | 216 |
| BseDI | CCNNGG | 2 cut(s) | 237, 324 |
| BseGI | GGATG | 1 cut(s) | 43 |
| BseJI | GATNNNNATC | 1 cut(s) | 216 |
| BseMI | GCAATG | 1 cut(s) | 391 |
| BseMII | CTCAG | 2 cut(s) | 81, 519 |
| BseXI | GCAGC | 2 cut(s) | 419, 459 |
| BshFI | GGCC | 2 cut(s) | 323, 329 |
| BsiHKAI | GWGCWC | 1 cut(s) | 297 |
| BsnI | GGCC | 2 cut(s) | 323, 329 |
| Bsp1286I | GDGCHC | 1 cut(s) | 297 |
| Bsp143I | GATC | 3 cut(s) | 247, 364, 374 |
| BspACI | CCGC | 1 cut(s) | 164 |
| BspANI | GGCC | 2 cut(s) | 323, 329 |
| BspCNI | CTCAG | 2 cut(s) | 82, 520 |
| BspHI | TCATGA | 1 cut(s) | 67 |
| BspTI | CTTAAG | 1 cut(s) | 358 |
| BsrDI | GCAATG | 1 cut(s) | 391 |
| BssECI | CCNNGG | 2 cut(s) | 237, 324 |
| BssMI | GATC | 3 cut(s) | 247, 364, 374 |
| BssT1I | CCWWGG | 1 cut(s) | 324 |
| Bst4CI | ACNGT | 1 cut(s) | 241 |
| Bst6I | CTCTTC | 1 cut(s) | 397 |
| BstAFI | CTTAAG | 1 cut(s) | 358 |
| BstC8I | GCNNGC | 1 cut(s) | 293 |
| BstDEI | CTNAG | 4 cut(s) | 90, 117, 492, 528 |
| BstDSI | CCRYGG | 1 cut(s) | 237 |
| BstF5I | GGATG | 1 cut(s) | 43 |
| BstKTI | GATC | 3 cut(s) | 250, 367, 377 |
| BstMBI | GATC | 3 cut(s) | 247, 364, 374 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 59, 86 |
| BstV1I | GCAGC | 2 cut(s) | 419, 459 |
| BsuRI | GGCC | 2 cut(s) | 323, 329 |
| BtgI | CCRYGG | 1 cut(s) | 237 |
| BtsCI | GGATG | 1 cut(s) | 43 |
| BtsI | GCAGTG | 1 cut(s) | 48 |
| BtsIMutI | CAGTG | 1 cut(s) | 48 |
| Cac8I | GCNNGC | 1 cut(s) | 293 |
| CciI | TCATGA | 1 cut(s) | 67 |
| CseI | GACGC | 1 cut(s) | 424 |
| CviAII | CATG | 2 cut(s) | 68, 505 |
| DdeI | CTNAG | 4 cut(s) | 90, 117, 492, 528 |
| DpnI | GATC | 3 cut(s) | 249, 366, 376 |
| DpnII | GATC | 3 cut(s) | 247, 364, 374 |
| Eam1104I | CTCTTC | 1 cut(s) | 397 |
| EarI | CTCTTC | 1 cut(s) | 397 |
| Ecl136II | GAGCTC | 1 cut(s) | 295 |
| Eco130I | CCWWGG | 1 cut(s) | 324 |
| Eco24I | GRGCYC | 1 cut(s) | 297 |
| Eco53kI | GAGCTC | 1 cut(s) | 295 |
| EcoICRI | GAGCTC | 1 cut(s) | 295 |
| EcoT14I | CCWWGG | 1 cut(s) | 324 |
| EcoT38I | GRGCYC | 1 cut(s) | 297 |
| ErhI | CCWWGG | 1 cut(s) | 324 |
| FaeI | CATG | 2 cut(s) | 71, 508 |
| FaiI | YATR | 9 cut(s) | 57, 69, 215, 252, 272, 283, 303, 372, 506 |
| FatI | CATG | 2 cut(s) | 67, 504 |
| Fnu4HI | GCNGC | 2 cut(s) | 433, 448 |
| FokI | GGATG | 1 cut(s) | 30 |
| FriOI | GRGCYC | 1 cut(s) | 297 |
| Fsp4HI | GCNGC | 2 cut(s) | 433, 448 |
| FspBI | CTAG | 3 cut(s) | 402, 411, 444 |
| GluI | GCNGC | 2 cut(s) | 433, 448 |
| HaeIII | GGCC | 2 cut(s) | 323, 329 |
| HgaI | GACGC | 1 cut(s) | 424 |
| Hin1II | CATG | 2 cut(s) | 71, 508 |
| HindIII | AAGCTT | 1 cut(s) | 60 |
| HinfI | GANTC | 3 cut(s) | 27, 217, 314 |
| HphI | GGTGA | 3 cut(s) | 44, 178, 269 |
| Hpy188III | TCNNGA | 1 cut(s) | 68 |
| Hpy99I | CGWCG | 1 cut(s) | 440 |
| HpyAV | CCTTC | 1 cut(s) | 533 |
| HpyCH4III | ACNGT | 1 cut(s) | 241 |
| HpyCH4IV | ACGT | 1 cut(s) | 254 |
| HpyCH4V | TGCA | 2 cut(s) | 101, 425 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 59, 86 |
| HpyF3I | CTNAG | 4 cut(s) | 90, 117, 492, 528 |
| HpySE526I | ACGT | 1 cut(s) | 254 |
| Hsp92II | CATG | 2 cut(s) | 71, 508 |
| Kzo9I | GATC | 3 cut(s) | 247, 364, 374 |
| LmnI | GCTCC | 1 cut(s) | 414 |
| Lsp1109I | GCAGC | 2 cut(s) | 419, 459 |
| LweI | GCATC | 1 cut(s) | 88 |
| MaeI | CTAG | 3 cut(s) | 402, 411, 444 |
| MaeII | ACGT | 1 cut(s) | 254 |
| MaeIII | GTNAC | 1 cut(s) | 275 |
| MalI | GATC | 3 cut(s) | 249, 366, 376 |
| MboI | GATC | 3 cut(s) | 247, 364, 374 |
| MboII | GAAGA | 3 cut(s) | 181, 384, 462 |
| MfeI | CAATTG | 1 cut(s) | 221 |
| MhlI | GDGCHC | 1 cut(s) | 297 |
| MluCI | AATT | 2 cut(s) | 221, 298 |
| MnlI | CCTC | 3 cut(s) | 123, 195, 400 |
| MseI | TTAA | 2 cut(s) | 287, 359 |
| MslI | CAYNNNNRTG | 1 cut(s) | 509 |
| MspCI | CTTAAG | 1 cut(s) | 358 |
| MunI | CAATTG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 59, 86 |
| NdeII | GATC | 3 cut(s) | 247, 364, 374 |
| NlaIII | CATG | 2 cut(s) | 71, 508 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| PagI | TCATGA | 1 cut(s) | 67 |
| PfeI | GAWTC | 3 cut(s) | 27, 217, 314 |
| PkrI | GCNGC | 2 cut(s) | 434, 449 |
| Psp124BI | GAGCTC | 1 cut(s) | 297 |
| RseI | CAYNNNNRTG | 1 cut(s) | 509 |
| SacI | GAGCTC | 1 cut(s) | 297 |
| SaqAI | TTAA | 2 cut(s) | 287, 359 |
| SatI | GCNGC | 2 cut(s) | 433, 448 |
| Sau3AI | GATC | 3 cut(s) | 247, 364, 374 |
| SduI | GDGCHC | 1 cut(s) | 297 |
| SetI | ASST | 9 cut(s) | 64, 91, 150, 257, 282, 297, 348, 434, 544 |
| SfaNI | GCATC | 1 cut(s) | 88 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 509 |
| SmlI | CTYRAG | 1 cut(s) | 358 |
| SmoI | CTYRAG | 1 cut(s) | 358 |
| Sse9I | AATT | 2 cut(s) | 221, 298 |
| SsiI | CCGC | 1 cut(s) | 164 |
| SspMI | CTAG | 3 cut(s) | 402, 411, 444 |
| SstI | GAGCTC | 1 cut(s) | 297 |
| StyI | CCWWGG | 1 cut(s) | 324 |
| TaaI | ACNGT | 1 cut(s) | 241 |
| TaiI | ACGT | 1 cut(s) | 257 |
| TaqI | TCGA | 2 cut(s) | 246, 556 |
| TasI | AATT | 2 cut(s) | 221, 298 |
| TfiI | GAWTC | 3 cut(s) | 27, 217, 314 |
| Tru1I | TTAA | 2 cut(s) | 287, 359 |
| Tru9I | TTAA | 2 cut(s) | 287, 359 |
| TscAI | CASTG | 1 cut(s) | 55 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| TseI | GCWGC | 2 cut(s) | 432, 447 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 4 cut(s) | 56, 230, 348, 521 |
| TspRI | CASTG | 1 cut(s) | 55 |
| Vha464I | CTTAAG | 1 cut(s) | 358 |
| XspI | CTAG | 3 cut(s) | 402, 411, 444 |