Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 157 - 258 | 6.2e-16 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 584 |
| AccB1I | GGYRCC | 2 cut(s) | 125, 353 |
| AccII | CGCG | 1 cut(s) | 652 |
| AciI | CCGC | 2 cut(s) | 140, 650 |
| AclWI | GGATC | 5 cut(s) | 150, 641, 753, 929, 950 |
| AcsI | RAATTY | 3 cut(s) | 46, 253, 287 |
| AfaI | GTAC | 1 cut(s) | 493 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 168, 377, 766, 965 |
| AgsI | TTSAA | 9 cut(s) | 197, 286, 350, 457, 616, 849, 883, 965, 994 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 783, 815 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 829, 861, 994, 1026 |
| AluBI | AGCT | 5 cut(s) | 281, 299, 603, 725, 1038 |
| AluI | AGCT | 5 cut(s) | 281, 299, 603, 725, 1038 |
| Alw26I | GTCTC | 2 cut(s) | 427, 527 |
| AlwI | GGATC | 5 cut(s) | 150, 641, 753, 929, 950 |
| AoxI | GGCC | 1 cut(s) | 380 |
| ApoI | RAATTY | 3 cut(s) | 46, 253, 287 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 116 |
| AspS9I | GGNCC | 1 cut(s) | 380 |
| AsuC2I | CCSGG | 1 cut(s) | 919 |
| AsuHPI | GGTGA | 7 cut(s) | 17, 154, 374, 512, 558, 815, 986 |
| BanI | GGYRCC | 2 cut(s) | 125, 353 |
| BbsI | GAAGAC | 1 cut(s) | 984 |
| BccI | CCATC | 3 cut(s) | 89, 692, 965 |
| BcnI | CCSGG | 1 cut(s) | 919 |
| BcoDI | GTCTC | 2 cut(s) | 427, 527 |
| BfaI | CTAG | 3 cut(s) | 209, 246, 843 |
| BmcAI | AGTACT | 1 cut(s) | 493 |
| Bme1390I | CCNGG | 1 cut(s) | 919 |
| BmgT120I | GGNCC | 1 cut(s) | 380 |
| BmiI | GGNNCC | 2 cut(s) | 127, 355 |
| BmrFI | CCNGG | 1 cut(s) | 919 |
| BmsI | GCATC | 2 cut(s) | 313, 572 |
| BpiI | GAAGAC | 1 cut(s) | 984 |
| BpuEI | CTTGAG | 3 cut(s) | 451, 683, 804 |
| BpuMI | CCSGG | 1 cut(s) | 919 |
| BsaBI | GATNNNNATC | 1 cut(s) | 945 |
| BsaI | GGTCTC | 2 cut(s) | 427, 527 |
| BsaJI | CCNNGG | 1 cut(s) | 357 |
| BsaWI | WCCGGW | 1 cut(s) | 1022 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 994, 1024 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 168, 377, 766, 965 |
| Bse118I | RCCGGY | 1 cut(s) | 385 |
| Bse3DI | GCAATG | 2 cut(s) | 630, 915 |
| Bse8I | GATNNNNATC | 1 cut(s) | 945 |
| BseDI | CCNNGG | 1 cut(s) | 357 |
| BseGI | GGATG | 1 cut(s) | 1013 |
| BseJI | GATNNNNATC | 1 cut(s) | 945 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 168, 377, 766, 965 |
| BseMI | GCAATG | 2 cut(s) | 630, 915 |
| BseMII | CTCAG | 1 cut(s) | 546 |
| Bsh1236I | CGCG | 1 cut(s) | 652 |
| BshFI | GGCC | 1 cut(s) | 382 |
| BshNI | GGYRCC | 2 cut(s) | 125, 353 |
| BsiSI | CCGG | 3 cut(s) | 386, 918, 1023 |
| BslFI | GGGAC | 2 cut(s) | 2, 850 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 168, 377, 766, 965 |
| BsmAI | GTCTC | 2 cut(s) | 427, 527 |
| BsmFI | GGGAC | 2 cut(s) | 2, 850 |
| BsmI | GAATGC | 1 cut(s) | 142 |
| BsnI | GGCC | 1 cut(s) | 382 |
| Bso31I | GGTCTC | 2 cut(s) | 427, 527 |
| Bsp143I | GATC | 5 cut(s) | 155, 646, 745, 921, 955 |
| BspACI | CCGC | 2 cut(s) | 140, 650 |
| BspANI | GGCC | 1 cut(s) | 382 |
| BspCNI | CTCAG | 1 cut(s) | 547 |
| BspFNI | CGCG | 1 cut(s) | 652 |
| BspLI | GGNNCC | 2 cut(s) | 127, 355 |
| BspPI | GGATC | 5 cut(s) | 150, 641, 753, 929, 950 |
| BspQI | GCTCTTC | 1 cut(s) | 898 |
| BspT107I | GGYRCC | 2 cut(s) | 125, 353 |
| BspTNI | GGTCTC | 2 cut(s) | 427, 527 |
| BsrDI | GCAATG | 2 cut(s) | 630, 915 |
| BsrFI | RCCGGY | 1 cut(s) | 385 |
| BssAI | RCCGGY | 1 cut(s) | 385 |
| BssECI | CCNNGG | 1 cut(s) | 357 |
| BssMI | GATC | 5 cut(s) | 155, 646, 745, 921, 955 |
| BssT1I | CCWWGG | 1 cut(s) | 357 |
| Bst4CI | ACNGT | 2 cut(s) | 484, 739 |
| Bst6I | CTCTTC | 2 cut(s) | 774, 898 |
| BstC8I | GCNNGC | 1 cut(s) | 328 |
| BstDEI | CTNAG | 1 cut(s) | 555 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 764, 963 |
| BstF5I | GGATG | 1 cut(s) | 1013 |
| BstFNI | CGCG | 1 cut(s) | 652 |
| BstKTI | GATC | 5 cut(s) | 158, 649, 748, 924, 958 |
| BstMAI | GTCTC | 2 cut(s) | 427, 527 |
| BstMBI | GATC | 5 cut(s) | 155, 646, 745, 921, 955 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 914 |
| BstSCI | CCNGG | 1 cut(s) | 917 |
| BstUI | CGCG | 1 cut(s) | 652 |
| BstV2I | GAAGAC | 1 cut(s) | 984 |
| BstX2I | RGATCY | 3 cut(s) | 155, 745, 955 |
| BstYI | RGATCY | 3 cut(s) | 155, 745, 955 |
| BsuRI | GGCC | 1 cut(s) | 382 |
| BtsCI | GGATG | 1 cut(s) | 1013 |
| Cac8I | GCNNGC | 1 cut(s) | 328 |
| Cfr10I | RCCGGY | 1 cut(s) | 385 |
| Cfr13I | GGNCC | 1 cut(s) | 380 |
| CseI | GACGC | 1 cut(s) | 641 |
| Csp6I | GTAC | 1 cut(s) | 492 |
| CviAII | CATG | 3 cut(s) | 35, 342, 546 |
| CviQI | GTAC | 1 cut(s) | 492 |
| DdeI | CTNAG | 1 cut(s) | 555 |
| DpnI | GATC | 5 cut(s) | 157, 648, 747, 923, 957 |
| DpnII | GATC | 5 cut(s) | 155, 646, 745, 921, 955 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 584 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 584 |
| Eam1104I | CTCTTC | 2 cut(s) | 774, 898 |
| EarI | CTCTTC | 2 cut(s) | 774, 898 |
| Eco130I | CCWWGG | 1 cut(s) | 357 |
| Eco31I | GGTCTC | 2 cut(s) | 427, 527 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 764, 963 |
| EcoRI | GAATTC | 1 cut(s) | 253 |
| EcoT14I | CCWWGG | 1 cut(s) | 357 |
| ErhI | CCWWGG | 1 cut(s) | 357 |
| FaeI | CATG | 3 cut(s) | 38, 345, 549 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 734, 766 |
| FaqI | GGGAC | 2 cut(s) | 2, 850 |
| FatI | CATG | 3 cut(s) | 34, 341, 545 |
| FokI | GGATG | 1 cut(s) | 1020 |
| FspBI | CTAG | 3 cut(s) | 209, 246, 843 |
| HaeIII | GGCC | 1 cut(s) | 382 |
| HapII | CCGG | 3 cut(s) | 386, 918, 1023 |
| HgaI | GACGC | 1 cut(s) | 641 |
| Hin1II | CATG | 3 cut(s) | 38, 345, 549 |
| HincII | GTYRAC | 2 cut(s) | 676, 1030 |
| HindII | GTYRAC | 2 cut(s) | 676, 1030 |
| HindIII | AAGCTT | 1 cut(s) | 297 |
| HinfI | GANTC | 3 cut(s) | 616, 688, 1044 |
| HpaII | CCGG | 3 cut(s) | 386, 918, 1023 |
| HphI | GGTGA | 7 cut(s) | 17, 154, 374, 512, 558, 815, 986 |
| Hpy166II | GTNNAC | 3 cut(s) | 676, 928, 1030 |
| Hpy188I | TCNGA | 4 cut(s) | 78, 135, 556, 1043 |
| Hpy188III | TCNNGA | 4 cut(s) | 265, 430, 644, 692 |
| Hpy8I | GTNNAC | 3 cut(s) | 676, 928, 1030 |
| HpyAV | CCTTC | 8 cut(s) | 32, 344, 371, 451, 736, 780, 883, 959 |
| HpyCH4III | ACNGT | 2 cut(s) | 484, 739 |
| HpyCH4V | TGCA | 9 cut(s) | 26, 34, 52, 216, 330, 341, 529, 563, 574 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 914 |
| HpyF3I | CTNAG | 1 cut(s) | 555 |
| Hsp92II | CATG | 3 cut(s) | 38, 345, 549 |
| Kzo9I | GATC | 5 cut(s) | 155, 646, 745, 921, 955 |
| LguI | GCTCTTC | 1 cut(s) | 898 |
| LmnI | GCTCC | 2 cut(s) | 412, 892 |
| LpnPI | CCDG | 3 cut(s) | 399, 931, 1036 |
| LweI | GCATC | 2 cut(s) | 313, 572 |
| MaeI | CTAG | 3 cut(s) | 209, 246, 843 |
| MalI | GATC | 5 cut(s) | 157, 648, 747, 923, 957 |
| MboI | GATC | 5 cut(s) | 155, 646, 745, 921, 955 |
| MboII | GAAGA | 8 cut(s) | 55, 124, 329, 332, 791, 915, 989, 1039 |
| MflI | RGATCY | 3 cut(s) | 155, 745, 955 |
| MluCI | AATT | 7 cut(s) | 46, 253, 287, 331, 416, 472, 994 |
| MmeI | TCCRAC | 1 cut(s) | 252 |
| MnlI | CCTC | 7 cut(s) | 51, 138, 169, 769, 775, 826, 996 |
| MroXI | GAANNNNTTC | 1 cut(s) | 116 |
| MseI | TTAA | 1 cut(s) | 183 |
| MspI | CCGG | 3 cut(s) | 386, 918, 1023 |
| MspR9I | CCNGG | 1 cut(s) | 919 |
| Mva1269I | GAATGC | 1 cut(s) | 142 |
| MvnI | CGCG | 1 cut(s) | 652 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 914 |
| NciI | CCSGG | 1 cut(s) | 919 |
| NdeII | GATC | 5 cut(s) | 155, 646, 745, 921, 955 |
| NlaIII | CATG | 3 cut(s) | 38, 345, 549 |
| NlaIV | GGNNCC | 2 cut(s) | 127, 355 |
| PciSI | GCTCTTC | 1 cut(s) | 898 |
| PctI | GAATGC | 1 cut(s) | 142 |
| PdmI | GAANNNNTTC | 1 cut(s) | 116 |
| PfeI | GAWTC | 3 cut(s) | 616, 688, 1044 |
| PspN4I | GGNNCC | 2 cut(s) | 127, 355 |
| PspPI | GGNCC | 1 cut(s) | 380 |
| PsuI | RGATCY | 3 cut(s) | 155, 745, 955 |
| RsaI | GTAC | 1 cut(s) | 493 |
| RsaNI | GTAC | 1 cut(s) | 492 |
| SapI | GCTCTTC | 1 cut(s) | 898 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| Sau3AI | GATC | 5 cut(s) | 155, 646, 745, 921, 955 |
| Sau96I | GGNCC | 1 cut(s) | 380 |
| ScaI | AGTACT | 1 cut(s) | 493 |
| ScrFI | CCNGG | 1 cut(s) | 919 |
| SfaNI | GCATC | 2 cut(s) | 313, 572 |
| SmlI | CTYRAG | 3 cut(s) | 430, 662, 819 |
| SmoI | CTYRAG | 3 cut(s) | 430, 662, 819 |
| Sse9I | AATT | 7 cut(s) | 46, 253, 287, 331, 416, 472, 994 |
| SsiI | CCGC | 2 cut(s) | 140, 650 |
| SspMI | CTAG | 3 cut(s) | 209, 246, 843 |
| StyD4I | CCNGG | 1 cut(s) | 917 |
| StyI | CCWWGG | 1 cut(s) | 357 |
| TaaI | ACNGT | 2 cut(s) | 484, 739 |
| TasI | AATT | 7 cut(s) | 46, 253, 287, 331, 416, 472, 994 |
| TatI | WGTACW | 1 cut(s) | 491 |
| TfiI | GAWTC | 3 cut(s) | 616, 688, 1044 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TspDTI | ATGAA | 9 cut(s) | 51, 109, 125, 459, 476, 619, 722, 726, 926 |
| TspGWI | ACGGA | 1 cut(s) | 878 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 764, 963 |
| XapI | RAATTY | 3 cut(s) | 46, 253, 287 |
| XmnI | GAANNNNTTC | 1 cut(s) | 116 |
| XspI | CTAG | 3 cut(s) | 209, 246, 843 |
| ZrmI | AGTACT | 1 cut(s) | 493 |