BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 767 |
| AccB1I | GGYRCC | 1 cut(s) | 767 |
| AccBSI | CCGCTC | 1 cut(s) | 32 |
| AccII | CGCG | 1 cut(s) | 1149 |
| AciI | CCGC | 6 cut(s) | 30, 222, 246, 270, 764, 1194 |
| AclWI | GGATC | 1 cut(s) | 929 |
| AcoI | YGGCCR | 7 cut(s) | 51, 99, 123, 171, 243, 267, 291 |
| AcuI | CTGAAG | 1 cut(s) | 36 |
| AfaI | GTAC | 3 cut(s) | 297, 748, 769 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 529, 997, 1162 |
| AflIII | ACRYGT | 2 cut(s) | 1147, 1167 |
| AjnI | CCWGG | 4 cut(s) | 393, 694, 1009, 1141 |
| AluBI | AGCT | 3 cut(s) | 876, 1022, 1062 |
| AluI | AGCT | 3 cut(s) | 876, 1022, 1062 |
| Alw21I | GWGCWC | 8 cut(s) | 192, 216, 240, 264, 288, 312, 336, 360 |
| Alw26I | GTCTC | 1 cut(s) | 14 |
| AlwI | GGATC | 1 cut(s) | 929 |
| AoxI | GGCC | 8 cut(s) | 51, 99, 123, 171, 243, 267, 291, 531 |
| ApeKI | GCWGC | 4 cut(s) | 461, 714, 873, 1197 |
| Asp718I | GGTACC | 1 cut(s) | 767 |
| AspLEI | GCGC | 1 cut(s) | 642 |
| AspS9I | GGNCC | 1 cut(s) | 531 |
| AsuHPI | GGTGA | 5 cut(s) | 334, 358, 667, 1069, 1111 |
| AsuII | TTCGAA | 1 cut(s) | 495 |
| BalI | TGGCCA | 2 cut(s) | 125, 173 |
| BanI | GGYRCC | 1 cut(s) | 767 |
| BbsI | GAAGAC | 2 cut(s) | 552, 834 |
| Bbv12I | GWGCWC | 8 cut(s) | 192, 216, 240, 264, 288, 312, 336, 360 |
| BbvI | GCAGC | 4 cut(s) | 448, 701, 885, 1184 |
| BccI | CCATC | 3 cut(s) | 379, 427, 451 |
| BceAI | ACGGC | 5 cut(s) | 66, 114, 258, 278, 282 |
| BciT130I | CCWGG | 4 cut(s) | 395, 696, 1011, 1143 |
| BclI | TGATCA | 1 cut(s) | 969 |
| BcoDI | GTCTC | 1 cut(s) | 14 |
| BfmI | CTRYAG | 1 cut(s) | 84 |
| BisI | GCNGC | 9 cut(s) | 30, 222, 246, 270, 462, 715, 874, 1195, 1198 |
| BlsI | GCNGC | 9 cut(s) | 31, 223, 247, 271, 463, 716, 875, 1196, 1199 |
| Bme1390I | CCNGG | 4 cut(s) | 395, 696, 1011, 1143 |
| BmgT120I | GGNCC | 1 cut(s) | 531 |
| BmiI | GGNNCC | 1 cut(s) | 769 |
| BmrFI | CCNGG | 4 cut(s) | 395, 696, 1011, 1143 |
| BmrI | ACTGGG | 2 cut(s) | 125, 221 |
| BmsI | GCATC | 3 cut(s) | 543, 567, 1015 |
| BmuI | ACTGGG | 2 cut(s) | 125, 221 |
| BoxI | GACNNNNGTC | 1 cut(s) | 945 |
| BpiI | GAAGAC | 2 cut(s) | 552, 834 |
| Bpu14I | TTCGAA | 1 cut(s) | 495 |
| BsaBI | GATNNNNATC | 1 cut(s) | 971 |
| BsaJI | CCNNGG | 4 cut(s) | 168, 393, 1010, 1043 |
| BsaWI | WCCGGW | 1 cut(s) | 903 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 574, 604, 1071, 1101 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 529, 997, 1162 |
| Bse1I | ACTGG | 3 cut(s) | 131, 227, 275 |
| Bse3DI | GCAATG | 1 cut(s) | 789 |
| Bse8I | GATNNNNATC | 1 cut(s) | 971 |
| BseBI | CCWGG | 4 cut(s) | 395, 696, 1011, 1143 |
| BseDI | CCNNGG | 4 cut(s) | 168, 393, 1010, 1043 |
| BseGI | GGATG | 3 cut(s) | 704, 972, 1006 |
| BseJI | GATNNNNATC | 1 cut(s) | 971 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 529, 997, 1162 |
| BseMI | GCAATG | 1 cut(s) | 789 |
| BseMII | CTCAG | 1 cut(s) | 1196 |
| BseNI | ACTGG | 3 cut(s) | 131, 227, 275 |
| BseX3I | CGGCCG | 2 cut(s) | 243, 267 |
| BseXI | GCAGC | 4 cut(s) | 448, 701, 885, 1184 |
| BseYI | CCCAGC | 2 cut(s) | 808, 856 |
| Bsh1236I | CGCG | 1 cut(s) | 1149 |
| Bsh1285I | CGRYCG | 3 cut(s) | 246, 270, 318 |
| BshFI | GGCC | 8 cut(s) | 53, 101, 125, 173, 245, 269, 293, 533 |
| BshNI | GGYRCC | 1 cut(s) | 767 |
| BsiEI | CGRYCG | 3 cut(s) | 246, 270, 318 |
| BsiHKAI | GWGCWC | 8 cut(s) | 192, 216, 240, 264, 288, 312, 336, 360 |
| BsiSI | CCGG | 1 cut(s) | 904 |
| BslFI | GGGAC | 1 cut(s) | 814 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 529, 997, 1162 |
| BsmAI | GTCTC | 1 cut(s) | 14 |
| BsmFI | GGGAC | 1 cut(s) | 814 |
| BsnI | GGCC | 8 cut(s) | 53, 101, 125, 173, 245, 269, 293, 533 |
| Bsp119I | TTCGAA | 1 cut(s) | 495 |
| Bsp1286I | GDGCHC | 8 cut(s) | 192, 216, 240, 264, 288, 312, 336, 360 |
| Bsp143I | GATC | 2 cut(s) | 934, 969 |
| Bsp19I | CCATGG | 1 cut(s) | 168 |
| BspACI | CCGC | 6 cut(s) | 30, 222, 246, 270, 764, 1194 |
| BspANI | GGCC | 8 cut(s) | 53, 101, 125, 173, 245, 269, 293, 533 |
| BspCNI | CTCAG | 1 cut(s) | 1195 |
| BspFNI | CGCG | 1 cut(s) | 1149 |
| BspLI | GGNNCC | 1 cut(s) | 769 |
| BspPI | GGATC | 1 cut(s) | 929 |
| BspT104I | TTCGAA | 1 cut(s) | 495 |
| BspT107I | GGYRCC | 1 cut(s) | 767 |
| BsrBI | CCGCTC | 1 cut(s) | 32 |
| BsrDI | GCAATG | 1 cut(s) | 789 |
| BsrI | ACTGG | 3 cut(s) | 131, 227, 275 |
| BssECI | CCNNGG | 4 cut(s) | 168, 393, 1010, 1043 |
| BssMI | GATC | 2 cut(s) | 934, 969 |
| BssT1I | CCWWGG | 1 cut(s) | 168 |
| Bst2UI | CCWGG | 4 cut(s) | 395, 696, 1011, 1143 |
| Bst4CI | ACNGT | 8 cut(s) | 196, 316, 340, 364, 746, 944, 1047, 1072 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 11, 723 |
| BstBI | TTCGAA | 1 cut(s) | 495 |
| BstC8I | GCNNGC | 3 cut(s) | 712, 719, 728 |
| BstDEI | CTNAG | 1 cut(s) | 1182 |
| BstDSI | CCRYGG | 2 cut(s) | 168, 1043 |
| BstEII | GGTNACC | 3 cut(s) | 340, 364, 436 |
| BstF5I | GGATG | 3 cut(s) | 704, 972, 1006 |
| BstFNI | CGCG | 1 cut(s) | 1149 |
| BstHHI | GCGC | 1 cut(s) | 642 |
| BstKTI | GATC | 2 cut(s) | 937, 972 |
| BstMAI | GTCTC | 1 cut(s) | 14 |
| BstMBI | GATC | 2 cut(s) | 934, 969 |
| BstMCI | CGRYCG | 3 cut(s) | 246, 270, 318 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 461, 637, 723, 727 |
| BstNI | CCWGG | 4 cut(s) | 395, 696, 1011, 1143 |
| BstNSI | RCATGY | 2 cut(s) | 714, 1171 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 945 |
| BstPI | GGTNACC | 3 cut(s) | 340, 364, 436 |
| BstSCI | CCNGG | 4 cut(s) | 393, 694, 1009, 1141 |
| BstSFI | CTRYAG | 1 cut(s) | 84 |
| BstUI | CGCG | 1 cut(s) | 1149 |
| BstV1I | GCAGC | 4 cut(s) | 448, 701, 885, 1184 |
| BstV2I | GAAGAC | 2 cut(s) | 552, 834 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 61 |
| BstZI | CGGCCG | 2 cut(s) | 243, 267 |
| BsuRI | GGCC | 8 cut(s) | 53, 101, 125, 173, 245, 269, 293, 533 |
| BtgI | CCRYGG | 2 cut(s) | 168, 1043 |
| BtgZI | GCGATG | 2 cut(s) | 446, 470 |
| BtsCI | GGATG | 3 cut(s) | 704, 972, 1006 |
| BtsI | GCAGTG | 1 cut(s) | 728 |
| BtsIMutI | CAGTG | 1 cut(s) | 728 |
| Cac8I | GCNNGC | 3 cut(s) | 712, 719, 728 |
| CfoI | GCGC | 1 cut(s) | 642 |
| Cfr13I | GGNCC | 1 cut(s) | 531 |
| CseI | GACGC | 1 cut(s) | 1155 |
| Csp6I | GTAC | 3 cut(s) | 296, 747, 768 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 115, 150, 163, 198 |
| CviQI | GTAC | 3 cut(s) | 296, 747, 768 |
| DdeI | CTNAG | 1 cut(s) | 1182 |
| DpnI | GATC | 2 cut(s) | 936, 971 |
| DpnII | GATC | 2 cut(s) | 934, 969 |
| EaeI | YGGCCR | 7 cut(s) | 51, 99, 123, 171, 243, 267, 291 |
| EagI | CGGCCG | 2 cut(s) | 243, 267 |
| EclXI | CGGCCG | 2 cut(s) | 243, 267 |
| Eco130I | CCWWGG | 1 cut(s) | 168 |
| Eco52I | CGGCCG | 2 cut(s) | 243, 267 |
| Eco57I | CTGAAG | 1 cut(s) | 36 |
| Eco91I | GGTNACC | 3 cut(s) | 340, 364, 436 |
| EcoO65I | GGTNACC | 3 cut(s) | 340, 364, 436 |
| EcoRII | CCWGG | 4 cut(s) | 393, 694, 1009, 1141 |
| EcoT14I | CCWWGG | 1 cut(s) | 168 |
| EcoT22I | ATGCAT | 1 cut(s) | 981 |
| ErhI | CCWWGG | 1 cut(s) | 168 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 724, 756 |
| FaqI | GGGAC | 1 cut(s) | 814 |
| FauI | CCCGC | 1 cut(s) | 757 |
| FauNDI | CATATG | 1 cut(s) | 996 |
| FbaI | TGATCA | 1 cut(s) | 969 |
| Fnu4HI | GCNGC | 9 cut(s) | 30, 222, 246, 270, 462, 715, 874, 1195, 1198 |
| FokI | GGATG | 3 cut(s) | 711, 979, 993 |
| Fsp4HI | GCNGC | 9 cut(s) | 30, 222, 246, 270, 462, 715, 874, 1195, 1198 |
| GlaI | GCGC | 1 cut(s) | 641 |
| GluI | GCNGC | 9 cut(s) | 30, 222, 246, 270, 462, 715, 874, 1195, 1198 |
| GsaI | CCCAGC | 2 cut(s) | 812, 860 |
| HaeIII | GGCC | 8 cut(s) | 53, 101, 125, 173, 245, 269, 293, 533 |
| HapII | CCGG | 1 cut(s) | 904 |
| HgaI | GACGC | 1 cut(s) | 1155 |
| HhaI | GCGC | 1 cut(s) | 642 |
| Hin6I | GCGC | 1 cut(s) | 640 |
| HinP1I | GCGC | 1 cut(s) | 640 |
| HinfI | GANTC | 5 cut(s) | 476, 589, 691, 907, 1033 |
| HpaII | CCGG | 1 cut(s) | 904 |
| HphI | GGTGA | 5 cut(s) | 334, 358, 667, 1069, 1111 |
| Hpy166II | GTNNAC | 1 cut(s) | 1173 |
| Hpy188I | TCNGA | 1 cut(s) | 1185 |
| Hpy188III | TCNNGA | 2 cut(s) | 41, 938 |
| Hpy8I | GTNNAC | 1 cut(s) | 1173 |
| Hpy99I | CGWCG | 1 cut(s) | 100 |
| HpyAV | CCTTC | 1 cut(s) | 790 |
| HpyCH4III | ACNGT | 8 cut(s) | 196, 316, 340, 364, 746, 944, 1047, 1072 |
| HpyCH4IV | ACGT | 1 cut(s) | 687 |
| HpyCH4V | TGCA | 8 cut(s) | 556, 717, 726, 962, 979, 994, 1028, 1091 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 461, 637, 723, 727 |
| HpyF3I | CTNAG | 1 cut(s) | 1182 |
| HpySE526I | ACGT | 1 cut(s) | 687 |
| HspAI | GCGC | 1 cut(s) | 640 |
| KpnI | GGTACC | 1 cut(s) | 771 |
| Ksp22I | TGATCA | 1 cut(s) | 969 |
| Kzo9I | GATC | 2 cut(s) | 934, 969 |
| LmnI | GCTCC | 2 cut(s) | 37, 667 |
| Lsp1109I | GCAGC | 4 cut(s) | 448, 701, 885, 1184 |
| LweI | GCATC | 3 cut(s) | 543, 567, 1015 |
| MaeII | ACGT | 1 cut(s) | 687 |
| MaeIII | GTNAC | 6 cut(s) | 340, 364, 436, 821, 899, 1117 |
| MalI | GATC | 2 cut(s) | 936, 971 |
| MbiI | CCGCTC | 1 cut(s) | 32 |
| MboI | GATC | 2 cut(s) | 934, 969 |
| MfeI | CAATTG | 2 cut(s) | 24, 657 |
| MhlI | GDGCHC | 8 cut(s) | 192, 216, 240, 264, 288, 312, 336, 360 |
| MlsI | TGGCCA | 2 cut(s) | 125, 173 |
| MluCI | AATT | 3 cut(s) | 24, 657, 924 |
| MluI | ACGCGT | 1 cut(s) | 1147 |
| MluNI | TGGCCA | 2 cut(s) | 125, 173 |
| MlyI | GAGTC | 3 cut(s) | 583, 700, 901 |
| MnlI | CCTC | 9 cut(s) | 68, 421, 445, 522, 601, 699, 788, 1126, 1189 |
| Mox20I | TGGCCA | 2 cut(s) | 125, 173 |
| Mph1103I | ATGCAT | 1 cut(s) | 981 |
| MscI | TGGCCA | 2 cut(s) | 125, 173 |
| MseI | TTAA | 2 cut(s) | 519, 1038 |
| MslI | CAYNNNNRTG | 1 cut(s) | 59 |
| Msp20I | TGGCCA | 2 cut(s) | 125, 173 |
| MspI | CCGG | 1 cut(s) | 904 |
| MspR9I | CCNGG | 4 cut(s) | 395, 696, 1011, 1143 |
| MunI | CAATTG | 2 cut(s) | 24, 657 |
| MvaI | CCWGG | 4 cut(s) | 395, 696, 1011, 1143 |
| MvnI | CGCG | 1 cut(s) | 1149 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 461, 637, 723, 727 |
| NcoI | CCATGG | 1 cut(s) | 168 |
| NdeI | CATATG | 1 cut(s) | 996 |
| NdeII | GATC | 2 cut(s) | 934, 969 |
| NlaIV | GGNNCC | 1 cut(s) | 769 |
| NmuCI | GTSAC | 3 cut(s) | 340, 364, 1117 |
| NsiI | ATGCAT | 1 cut(s) | 981 |
| NspI | RCATGY | 2 cut(s) | 714, 1171 |
| NspV | TTCGAA | 1 cut(s) | 495 |
| PaeI | GCATGC | 1 cut(s) | 714 |
| PciI | ACATGT | 1 cut(s) | 1167 |
| PfeI | GAWTC | 2 cut(s) | 476, 1033 |
| PfoI | TCCNGGA | 1 cut(s) | 694 |
| PkrI | GCNGC | 9 cut(s) | 31, 223, 247, 271, 463, 716, 875, 1196, 1199 |
| PleI | GAGTC | 3 cut(s) | 583, 699, 901 |
| PpsI | GAGTC | 3 cut(s) | 583, 699, 901 |
| PscI | ACATGT | 1 cut(s) | 1167 |
| PshAI | GACNNNNGTC | 1 cut(s) | 945 |
| Psp6I | CCWGG | 4 cut(s) | 393, 694, 1009, 1141 |
| PspEI | GGTNACC | 3 cut(s) | 340, 364, 436 |
| PspFI | CCCAGC | 2 cut(s) | 808, 856 |
| PspGI | CCWGG | 4 cut(s) | 393, 694, 1009, 1141 |
| PspN4I | GGNNCC | 1 cut(s) | 769 |
| PspPI | GGNCC | 1 cut(s) | 531 |
| RsaI | GTAC | 3 cut(s) | 297, 748, 769 |
| RsaNI | GTAC | 3 cut(s) | 296, 747, 768 |
| RseI | CAYNNNNRTG | 1 cut(s) | 59 |
| SaqAI | TTAA | 2 cut(s) | 519, 1038 |
| SatI | GCNGC | 9 cut(s) | 30, 222, 246, 270, 462, 715, 874, 1195, 1198 |
| Sau3AI | GATC | 2 cut(s) | 934, 969 |
| Sau96I | GGNCC | 1 cut(s) | 531 |
| SchI | GAGTC | 3 cut(s) | 583, 700, 901 |
| ScrFI | CCNGG | 4 cut(s) | 395, 696, 1011, 1143 |
| SduI | GDGCHC | 8 cut(s) | 192, 216, 240, 264, 288, 312, 336, 360 |
| SfaNI | GCATC | 3 cut(s) | 543, 567, 1015 |
| SfcI | CTRYAG | 1 cut(s) | 84 |
| SfuI | TTCGAA | 1 cut(s) | 495 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 59 |
| SphI | GCATGC | 1 cut(s) | 714 |
| Sse9I | AATT | 3 cut(s) | 24, 657, 924 |
| SsiI | CCGC | 6 cut(s) | 30, 222, 246, 270, 764, 1194 |
| StyD4I | CCNGG | 4 cut(s) | 393, 694, 1009, 1141 |
| StyI | CCWWGG | 1 cut(s) | 168 |
| TaaI | ACNGT | 8 cut(s) | 196, 316, 340, 364, 746, 944, 1047, 1072 |
| TaiI | ACGT | 1 cut(s) | 690 |
| TaqI | TCGA | 1 cut(s) | 495 |
| TasI | AATT | 3 cut(s) | 24, 657, 924 |
| TauI | GCSGC | 5 cut(s) | 32, 224, 248, 272, 1197 |
| TfiI | GAWTC | 2 cut(s) | 476, 1033 |
| Tru1I | TTAA | 2 cut(s) | 519, 1038 |
| Tru9I | TTAA | 2 cut(s) | 519, 1038 |
| TscAI | CASTG | 1 cut(s) | 728 |
| TseFI | GTSAC | 3 cut(s) | 340, 364, 1117 |
| TseI | GCWGC | 4 cut(s) | 461, 714, 873, 1197 |
| Tsp45I | GTSAC | 3 cut(s) | 340, 364, 1117 |
| TspDTI | ATGAA | 4 cut(s) | 462, 558, 582, 612 |
| TspGWI | ACGGA | 1 cut(s) | 1118 |
| TspRI | CASTG | 1 cut(s) | 728 |
| XceI | RCATGY | 2 cut(s) | 714, 1171 |
| Zsp2I | ATGCAT | 1 cut(s) | 981 |