BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 347 |
| AccII | CGCG | 1 cut(s) | 106 |
| AciI | CCGC | 2 cut(s) | 104, 173 |
| AclI | AACGTT | 1 cut(s) | 72 |
| AcoI | YGGCCR | 1 cut(s) | 150 |
| AcsI | RAATTY | 1 cut(s) | 358 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 383, 426 |
| AflIII | ACRYGT | 2 cut(s) | 117, 267 |
| AgsI | TTSAA | 3 cut(s) | 96, 233, 364 |
| AluBI | AGCT | 2 cut(s) | 148, 229 |
| AluI | AGCT | 2 cut(s) | 148, 229 |
| AoxI | GGCC | 1 cut(s) | 150 |
| ApeKI | GCWGC | 1 cut(s) | 430 |
| ApoI | RAATTY | 1 cut(s) | 358 |
| AspLEI | GCGC | 1 cut(s) | 108 |
| AspS9I | GGNCC | 1 cut(s) | 374 |
| AsuHPI | GGTGA | 2 cut(s) | 191, 270 |
| AvaII | GGWCC | 1 cut(s) | 374 |
| BaeGI | GKGCMC | 1 cut(s) | 389 |
| BalI | TGGCCA | 1 cut(s) | 152 |
| BanI | GGYRCC | 1 cut(s) | 347 |
| BauI | CACGAG | 1 cut(s) | 396 |
| BbsI | GAAGAC | 2 cut(s) | 143, 422 |
| BbvI | GCAGC | 1 cut(s) | 417 |
| BceAI | ACGGC | 1 cut(s) | 226 |
| BisI | GCNGC | 3 cut(s) | 104, 173, 431 |
| BlsI | GCNGC | 3 cut(s) | 105, 174, 432 |
| Bme18I | GGWCC | 1 cut(s) | 374 |
| BmgT120I | GGNCC | 1 cut(s) | 374 |
| BmiI | GGNNCC | 2 cut(s) | 349, 376 |
| BpiI | GAAGAC | 2 cut(s) | 143, 422 |
| BsaAI | YACGTR | 1 cut(s) | 270 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 383, 426 |
| Bse1I | ACTGG | 1 cut(s) | 184 |
| Bse3DI | GCAATG | 1 cut(s) | 220 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 383, 426 |
| BseMI | GCAATG | 1 cut(s) | 220 |
| BseNI | ACTGG | 1 cut(s) | 184 |
| BseSI | GKGCMC | 1 cut(s) | 389 |
| BseXI | GCAGC | 1 cut(s) | 417 |
| Bsh1236I | CGCG | 1 cut(s) | 106 |
| BshFI | GGCC | 1 cut(s) | 152 |
| BshNI | GGYRCC | 1 cut(s) | 347 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 383, 426 |
| BsnI | GGCC | 1 cut(s) | 152 |
| Bsp1286I | GDGCHC | 1 cut(s) | 389 |
| BspACI | CCGC | 2 cut(s) | 104, 173 |
| BspANI | GGCC | 1 cut(s) | 152 |
| BspFNI | CGCG | 1 cut(s) | 106 |
| BspLI | GGNNCC | 2 cut(s) | 349, 376 |
| BspT107I | GGYRCC | 1 cut(s) | 347 |
| BsrDI | GCAATG | 1 cut(s) | 220 |
| BsrI | ACTGG | 1 cut(s) | 184 |
| BssSI | CACGAG | 1 cut(s) | 396 |
| Bst2BI | CACGAG | 1 cut(s) | 396 |
| Bst4CI | ACNGT | 1 cut(s) | 391 |
| Bst6I | CTCTTC | 1 cut(s) | 293 |
| BstBAI | YACGTR | 1 cut(s) | 270 |
| BstC8I | GCNNGC | 2 cut(s) | 150, 428 |
| BstDEI | CTNAG | 1 cut(s) | 314 |
| BstEII | GGTNACC | 1 cut(s) | 179 |
| BstFNI | CGCG | 1 cut(s) | 106 |
| BstHHI | GCGC | 1 cut(s) | 108 |
| BstNSI | RCATGY | 1 cut(s) | 121 |
| BstPI | GGTNACC | 1 cut(s) | 179 |
| BstSLI | GKGCMC | 1 cut(s) | 389 |
| BstUI | CGCG | 1 cut(s) | 106 |
| BstV1I | GCAGC | 1 cut(s) | 417 |
| BstV2I | GAAGAC | 2 cut(s) | 143, 422 |
| BsuRI | GGCC | 1 cut(s) | 152 |
| Cac8I | GCNNGC | 2 cut(s) | 150, 428 |
| CfoI | GCGC | 1 cut(s) | 108 |
| Cfr13I | GGNCC | 1 cut(s) | 374 |
| CviAII | CATG | 1 cut(s) | 118 |
| CviJI | RGCY | 6 cut(s) | 103, 148, 152, 229, 401, 430 |
| CviKI_1 | RGCY | 6 cut(s) | 103, 148, 152, 229, 401, 430 |
| DdeI | CTNAG | 1 cut(s) | 314 |
| EaeI | YGGCCR | 1 cut(s) | 150 |
| Eam1104I | CTCTTC | 1 cut(s) | 293 |
| EarI | CTCTTC | 1 cut(s) | 293 |
| Eco32I | GATATC | 1 cut(s) | 51 |
| Eco47I | GGWCC | 1 cut(s) | 374 |
| Eco91I | GGTNACC | 1 cut(s) | 179 |
| EcoO109I | RGGNCCY | 1 cut(s) | 374 |
| EcoO65I | GGTNACC | 1 cut(s) | 179 |
| EcoRV | GATATC | 1 cut(s) | 51 |
| FaeI | CATG | 1 cut(s) | 121 |
| FaiI | YATR | 7 cut(s) | 11, 13, 119, 158, 246, 273, 275 |
| FatI | CATG | 1 cut(s) | 117 |
| FauNDI | CATATG | 1 cut(s) | 11 |
| Fnu4HI | GCNGC | 3 cut(s) | 104, 173, 431 |
| Fsp4HI | GCNGC | 3 cut(s) | 104, 173, 431 |
| GlaI | GCGC | 1 cut(s) | 107 |
| GluI | GCNGC | 3 cut(s) | 104, 173, 431 |
| HaeIII | GGCC | 1 cut(s) | 152 |
| HhaI | GCGC | 1 cut(s) | 108 |
| Hin1II | CATG | 1 cut(s) | 121 |
| Hin6I | GCGC | 1 cut(s) | 106 |
| HinP1I | GCGC | 1 cut(s) | 106 |
| HincII | GTYRAC | 1 cut(s) | 76 |
| HindII | GTYRAC | 1 cut(s) | 76 |
| HphI | GGTGA | 2 cut(s) | 191, 270 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 2 cut(s) | 239, 259 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| Hpy99I | CGWCG | 3 cut(s) | 93, 212, 243 |
| HpyAV | CCTTC | 3 cut(s) | 31, 365, 400 |
| HpyCH4III | ACNGT | 1 cut(s) | 391 |
| HpyCH4IV | ACGT | 3 cut(s) | 72, 91, 269 |
| HpyCH4V | TGCA | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 1 cut(s) | 314 |
| HpySE526I | ACGT | 3 cut(s) | 72, 91, 269 |
| Hsp92II | CATG | 1 cut(s) | 121 |
| HspAI | GCGC | 1 cut(s) | 106 |
| LpnPI | CCDG | 6 cut(s) | 134, 197, 239, 391, 412, 419 |
| Lsp1109I | GCAGC | 1 cut(s) | 417 |
| MaeII | ACGT | 3 cut(s) | 72, 91, 269 |
| MaeIII | GTNAC | 1 cut(s) | 179 |
| MhlI | GDGCHC | 1 cut(s) | 389 |
| MlsI | TGGCCA | 1 cut(s) | 152 |
| MluCI | AATT | 2 cut(s) | 252, 358 |
| MluNI | TGGCCA | 1 cut(s) | 152 |
| MmeI | TCCRAC | 1 cut(s) | 262 |
| MnlI | CCTC | 2 cut(s) | 204, 296 |
| Mox20I | TGGCCA | 1 cut(s) | 152 |
| MscI | TGGCCA | 1 cut(s) | 152 |
| MseI | TTAA | 1 cut(s) | 439 |
| Msp20I | TGGCCA | 1 cut(s) | 152 |
| MvnI | CGCG | 1 cut(s) | 106 |
| NdeI | CATATG | 1 cut(s) | 11 |
| NlaIII | CATG | 1 cut(s) | 121 |
| NlaIV | GGNNCC | 2 cut(s) | 349, 376 |
| NmuCI | GTSAC | 1 cut(s) | 179 |
| NspI | RCATGY | 1 cut(s) | 121 |
| PciI | ACATGT | 1 cut(s) | 117 |
| PkrI | GCNGC | 3 cut(s) | 105, 174, 432 |
| Ppu21I | YACGTR | 1 cut(s) | 270 |
| PpuMI | RGGWCCY | 1 cut(s) | 374 |
| PscI | ACATGT | 1 cut(s) | 117 |
| Psp1406I | AACGTT | 1 cut(s) | 72 |
| Psp5II | RGGWCCY | 1 cut(s) | 374 |
| PspEI | GGTNACC | 1 cut(s) | 179 |
| PspN4I | GGNNCC | 2 cut(s) | 349, 376 |
| PspPI | GGNCC | 1 cut(s) | 374 |
| PspPPI | RGGWCCY | 1 cut(s) | 374 |
| SaqAI | TTAA | 1 cut(s) | 439 |
| SatI | GCNGC | 3 cut(s) | 104, 173, 431 |
| Sau96I | GGNCC | 1 cut(s) | 374 |
| SduI | GDGCHC | 1 cut(s) | 389 |
| SetI | ASST | 9 cut(s) | 75, 94, 150, 196, 231, 272, 283, 288, 411 |
| SinI | GGWCC | 1 cut(s) | 374 |
| Sse9I | AATT | 2 cut(s) | 252, 358 |
| SsiI | CCGC | 2 cut(s) | 104, 173 |
| TaaI | ACNGT | 1 cut(s) | 391 |
| TaiI | ACGT | 3 cut(s) | 75, 94, 272 |
| TaqI | TCGA | 1 cut(s) | 88 |
| TasI | AATT | 2 cut(s) | 252, 358 |
| TauI | GCSGC | 2 cut(s) | 106, 175 |
| Tru1I | TTAA | 1 cut(s) | 439 |
| Tru9I | TTAA | 1 cut(s) | 439 |
| TseFI | GTSAC | 1 cut(s) | 179 |
| TseI | GCWGC | 1 cut(s) | 430 |
| Tsp45I | GTSAC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 1 cut(s) | 231 |
| VpaK11BI | GGWCC | 1 cut(s) | 374 |
| XapI | RAATTY | 1 cut(s) | 358 |
| XceI | RCATGY | 1 cut(s) | 121 |