Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 83 - 166 | 4.7e-12 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 9 |
| AcsI | RAATTY | 2 cut(s) | 219, 398 |
| AfaI | GTAC | 1 cut(s) | 410 |
| AgsI | TTSAA | 1 cut(s) | 475 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 46 |
| AjnI | CCWGG | 1 cut(s) | 420 |
| AluBI | AGCT | 4 cut(s) | 25, 35, 249, 439 |
| AluI | AGCT | 4 cut(s) | 25, 35, 249, 439 |
| Alw26I | GTCTC | 3 cut(s) | 216, 347, 385 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 356 |
| ApeKI | GCWGC | 1 cut(s) | 22 |
| ApoI | RAATTY | 2 cut(s) | 219, 398 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 395, 427 |
| AspS9I | GGNCC | 1 cut(s) | 164 |
| AvaII | GGWCC | 1 cut(s) | 164 |
| BbsI | GAAGAC | 1 cut(s) | 432 |
| BbvI | GCAGC | 1 cut(s) | 34 |
| BciT130I | CCWGG | 1 cut(s) | 422 |
| BcoDI | GTCTC | 3 cut(s) | 216, 347, 385 |
| BfmI | CTRYAG | 1 cut(s) | 195 |
| BglII | AGATCT | 1 cut(s) | 363 |
| BisI | GCNGC | 1 cut(s) | 23 |
| BlsI | GCNGC | 1 cut(s) | 24 |
| BmcAI | AGTACT | 1 cut(s) | 410 |
| Bme1390I | CCNGG | 1 cut(s) | 422 |
| Bme18I | GGWCC | 1 cut(s) | 164 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 1 cut(s) | 164 |
| BmiI | GGNNCC | 1 cut(s) | 419 |
| BmrFI | CCNGG | 1 cut(s) | 422 |
| BmsI | GCATC | 1 cut(s) | 327 |
| BpiI | GAAGAC | 1 cut(s) | 432 |
| BpuEI | CTTGAG | 1 cut(s) | 451 |
| BsaBI | GATNNNNATC | 1 cut(s) | 117 |
| BsaI | GGTCTC | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 1 cut(s) | 453 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| Bse8I | GATNNNNATC | 1 cut(s) | 117 |
| BseBI | CCWGG | 1 cut(s) | 422 |
| BseDI | CCNNGG | 1 cut(s) | 453 |
| BseGI | GGATG | 2 cut(s) | 97, 109 |
| BseJI | GATNNNNATC | 1 cut(s) | 117 |
| BseMII | CTCAG | 4 cut(s) | 297, 324, 348, 493 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseRI | GAGGAG | 2 cut(s) | 191, 241 |
| BseXI | GCAGC | 1 cut(s) | 34 |
| BsmAI | GTCTC | 3 cut(s) | 216, 347, 385 |
| Bso31I | GGTCTC | 1 cut(s) | 216 |
| Bsp143I | GATC | 2 cut(s) | 118, 363 |
| BspCNI | CTCAG | 4 cut(s) | 298, 325, 349, 492 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 1 cut(s) | 419 |
| BspTNI | GGTCTC | 1 cut(s) | 216 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 1 cut(s) | 453 |
| BssMI | GATC | 2 cut(s) | 118, 363 |
| BssT1I | CCWWGG | 1 cut(s) | 453 |
| Bst2UI | CCWGG | 1 cut(s) | 422 |
| Bst4CI | ACNGT | 1 cut(s) | 431 |
| BstDEI | CTNAG | 4 cut(s) | 306, 333, 357, 479 |
| BstF5I | GGATG | 2 cut(s) | 97, 109 |
| BstKTI | GATC | 2 cut(s) | 121, 366 |
| BstMAI | GTCTC | 3 cut(s) | 216, 347, 385 |
| BstMBI | GATC | 2 cut(s) | 118, 363 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 136, 302 |
| BstNI | CCWGG | 1 cut(s) | 422 |
| BstSCI | CCNGG | 1 cut(s) | 420 |
| BstSFI | CTRYAG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 1 cut(s) | 34 |
| BstV2I | GAAGAC | 1 cut(s) | 432 |
| BstX2I | RGATCY | 1 cut(s) | 363 |
| BstYI | RGATCY | 1 cut(s) | 363 |
| BtsCI | GGATG | 2 cut(s) | 97, 109 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 1 cut(s) | 12 |
| CaiI | CAGNNNCTG | 1 cut(s) | 356 |
| CciI | TCATGA | 1 cut(s) | 283 |
| Cfr13I | GGNCC | 1 cut(s) | 164 |
| Csp6I | GTAC | 1 cut(s) | 409 |
| CviAII | CATG | 3 cut(s) | 238, 284, 376 |
| CviJI | RGCY | 8 cut(s) | 25, 35, 194, 249, 305, 380, 420, 439 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 35, 194, 249, 305, 380, 420, 439 |
| CviQI | GTAC | 1 cut(s) | 409 |
| DdeI | CTNAG | 4 cut(s) | 306, 333, 357, 479 |
| DpnI | GATC | 2 cut(s) | 120, 365 |
| DpnII | GATC | 2 cut(s) | 118, 363 |
| DriI | GACNNNNNGTC | 1 cut(s) | 46 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 46 |
| Eco130I | CCWWGG | 1 cut(s) | 453 |
| Eco31I | GGTCTC | 1 cut(s) | 216 |
| Eco47I | GGWCC | 1 cut(s) | 164 |
| EcoRII | CCWGG | 1 cut(s) | 420 |
| EcoT14I | CCWWGG | 1 cut(s) | 453 |
| ErhI | CCWWGG | 1 cut(s) | 453 |
| FaeI | CATG | 3 cut(s) | 241, 287, 379 |
| FatI | CATG | 3 cut(s) | 237, 283, 375 |
| FblI | GTMKAC | 1 cut(s) | 9 |
| Fnu4HI | GCNGC | 1 cut(s) | 23 |
| FokI | GGATG | 2 cut(s) | 104, 116 |
| Fsp4HI | GCNGC | 1 cut(s) | 23 |
| GluI | GCNGC | 1 cut(s) | 23 |
| Hin1II | CATG | 3 cut(s) | 241, 287, 379 |
| HincII | GTYRAC | 1 cut(s) | 10 |
| HindII | GTYRAC | 1 cut(s) | 10 |
| HindIII | AAGCTT | 1 cut(s) | 33 |
| Hpy166II | GTNNAC | 2 cut(s) | 10, 324 |
| Hpy188I | TCNGA | 2 cut(s) | 352, 482 |
| Hpy188III | TCNNGA | 1 cut(s) | 284 |
| Hpy8I | GTNNAC | 2 cut(s) | 10, 324 |
| HpyAV | CCTTC | 1 cut(s) | 144 |
| HpyCH4III | ACNGT | 1 cut(s) | 431 |
| HpyCH4V | TGCA | 5 cut(s) | 22, 124, 130, 340, 501 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 136, 302 |
| HpyF3I | CTNAG | 4 cut(s) | 306, 333, 357, 479 |
| Hsp92II | CATG | 3 cut(s) | 241, 287, 379 |
| Kzo9I | GATC | 2 cut(s) | 118, 363 |
| LmnI | GCTCC | 2 cut(s) | 254, 417 |
| LpnPI | CCDG | 5 cut(s) | 183, 330, 345, 407, 434 |
| Lsp1109I | GCAGC | 1 cut(s) | 34 |
| LweI | GCATC | 1 cut(s) | 327 |
| MaeIII | GTNAC | 1 cut(s) | 232 |
| MalI | GATC | 2 cut(s) | 120, 365 |
| MboI | GATC | 2 cut(s) | 118, 363 |
| MboII | GAAGA | 5 cut(s) | 122, 253, 373, 397, 437 |
| MflI | RGATCY | 1 cut(s) | 363 |
| MluCI | AATT | 2 cut(s) | 219, 398 |
| MnlI | CCTC | 6 cut(s) | 52, 82, 100, 169, 172, 262 |
| MseI | TTAA | 1 cut(s) | 461 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| MspA1I | CMGCKG | 1 cut(s) | 25 |
| MspR9I | CCNGG | 1 cut(s) | 422 |
| MvaI | CCWGG | 1 cut(s) | 422 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 136, 302 |
| NdeII | GATC | 2 cut(s) | 118, 363 |
| NlaIII | CATG | 3 cut(s) | 241, 287, 379 |
| NlaIV | GGNNCC | 1 cut(s) | 419 |
| NmuCI | GTSAC | 1 cut(s) | 232 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PkrI | GCNGC | 1 cut(s) | 24 |
| Psp6I | CCWGG | 1 cut(s) | 420 |
| PspGI | CCWGG | 1 cut(s) | 420 |
| PspN4I | GGNNCC | 1 cut(s) | 419 |
| PspPI | GGNCC | 1 cut(s) | 164 |
| PstNI | CAGNNNCTG | 1 cut(s) | 356 |
| PsuI | RGATCY | 1 cut(s) | 363 |
| PvuII | CAGCTG | 1 cut(s) | 25 |
| RsaI | GTAC | 1 cut(s) | 410 |
| RsaNI | GTAC | 1 cut(s) | 409 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SalI | GTCGAC | 1 cut(s) | 8 |
| SaqAI | TTAA | 1 cut(s) | 461 |
| SatI | GCNGC | 1 cut(s) | 23 |
| Sau3AI | GATC | 2 cut(s) | 118, 363 |
| Sau96I | GGNCC | 1 cut(s) | 164 |
| ScaI | AGTACT | 1 cut(s) | 410 |
| ScrFI | CCNGG | 1 cut(s) | 422 |
| SetI | ASST | 9 cut(s) | 27, 37, 57, 172, 212, 251, 334, 441, 473 |
| SfaNI | GCATC | 1 cut(s) | 327 |
| SfcI | CTRYAG | 1 cut(s) | 195 |
| SinI | GGWCC | 1 cut(s) | 164 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| SmlI | CTYRAG | 1 cut(s) | 466 |
| SmoI | CTYRAG | 1 cut(s) | 466 |
| Sse9I | AATT | 2 cut(s) | 219, 398 |
| SspI | AATATT | 1 cut(s) | 278 |
| StyD4I | CCNGG | 1 cut(s) | 420 |
| StyI | CCWWGG | 1 cut(s) | 453 |
| TaaI | ACNGT | 1 cut(s) | 431 |
| TaqI | TCGA | 1 cut(s) | 9 |
| TasI | AATT | 2 cut(s) | 219, 398 |
| TatI | WGTACW | 1 cut(s) | 408 |
| Tru1I | TTAA | 1 cut(s) | 461 |
| Tru9I | TTAA | 1 cut(s) | 461 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseFI | GTSAC | 1 cut(s) | 232 |
| TseI | GCWGC | 1 cut(s) | 22 |
| Tsp45I | GTSAC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 3 cut(s) | 89, 254, 272 |
| TspRI | CASTG | 1 cut(s) | 19 |
| VpaK11BI | GGWCC | 1 cut(s) | 164 |
| XapI | RAATTY | 2 cut(s) | 219, 398 |
| XmiI | GTMKAC | 1 cut(s) | 9 |
| ZrmI | AGTACT | 1 cut(s) | 410 |