Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 165 - 268 | 2.2e-14 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 468 |
| AccBSI | CCGCTC | 1 cut(s) | 971 |
| AccIII | TCCGGA | 1 cut(s) | 409 |
| AciI | CCGC | 4 cut(s) | 107, 397, 633, 971 |
| AclWI | GGATC | 2 cut(s) | 949, 1017 |
| AcsI | RAATTY | 3 cut(s) | 462, 561, 695 |
| AdeI | CACNNNGTG | 1 cut(s) | 252 |
| AfaI | GTAC | 7 cut(s) | 28, 56, 156, 692, 844, 891, 1013 |
| AgsI | TTSAA | 4 cut(s) | 289, 349, 644, 939 |
| AhlI | ACTAGT | 1 cut(s) | 845 |
| AluBI | AGCT | 2 cut(s) | 112, 613 |
| AluI | AGCT | 2 cut(s) | 112, 613 |
| Alw26I | GTCTC | 2 cut(s) | 364, 704 |
| AlwI | GGATC | 2 cut(s) | 949, 1017 |
| Ama87I | CYCGRG | 1 cut(s) | 685 |
| Aor13HI | TCCGGA | 1 cut(s) | 409 |
| AoxI | GGCC | 2 cut(s) | 390, 669 |
| ApoI | RAATTY | 3 cut(s) | 462, 561, 695 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 342, 374 |
| AspS9I | GGNCC | 2 cut(s) | 404, 670 |
| AsuHPI | GGTGA | 5 cut(s) | 391, 448, 541, 647, 661 |
| AvaI | CYCGRG | 1 cut(s) | 685 |
| AvaII | GGWCC | 1 cut(s) | 404 |
| BanII | GRGCYC | 1 cut(s) | 49 |
| BbsI | GAAGAC | 1 cut(s) | 16 |
| BccI | CCATC | 4 cut(s) | 92, 307, 368, 910 |
| BciVI | GTATCC | 1 cut(s) | 239 |
| BcoDI | GTCTC | 2 cut(s) | 364, 704 |
| BcuI | ACTAGT | 1 cut(s) | 845 |
| BfaI | CTAG | 3 cut(s) | 719, 846, 893 |
| BfuI | GTATCC | 1 cut(s) | 239 |
| BmcAI | AGTACT | 1 cut(s) | 844 |
| Bme18I | GGWCC | 1 cut(s) | 404 |
| BmeT110I | CYCGRG | 1 cut(s) | 685 |
| BmgT120I | GGNCC | 2 cut(s) | 404, 670 |
| BmiI | GGNNCC | 1 cut(s) | 405 |
| BmsI | GCATC | 1 cut(s) | 118 |
| BoxI | GACNNNNGTC | 1 cut(s) | 16 |
| BpiI | GAAGAC | 1 cut(s) | 16 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 344, 376 |
| BpuEI | CTTGAG | 1 cut(s) | 599 |
| Bsa29I | ATCGAT | 1 cut(s) | 1021 |
| BsaAI | YACGTR | 1 cut(s) | 264 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1027 |
| BsaI | GGTCTC | 1 cut(s) | 364 |
| BsaJI | CCNNGG | 1 cut(s) | 686 |
| BsaWI | WCCGGW | 1 cut(s) | 409 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 484, 514 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1027 |
| BseAI | TCCGGA | 1 cut(s) | 409 |
| BseCI | ATCGAT | 1 cut(s) | 1021 |
| BseDI | CCNNGG | 1 cut(s) | 686 |
| BseGI | GGATG | 6 cut(s) | 75, 103, 161, 225, 424, 743 |
| BseJI | GATNNNNATC | 1 cut(s) | 1027 |
| BseRI | GAGGAG | 2 cut(s) | 368, 770 |
| BseYI | CCCAGC | 1 cut(s) | 166 |
| BshFI | GGCC | 2 cut(s) | 392, 671 |
| BshVI | ATCGAT | 1 cut(s) | 1021 |
| BsiHKCI | CYCGRG | 1 cut(s) | 685 |
| BsiSI | CCGG | 1 cut(s) | 410 |
| BsmAI | GTCTC | 2 cut(s) | 364, 704 |
| BsmI | GAATGC | 1 cut(s) | 262 |
| BsnI | GGCC | 2 cut(s) | 392, 671 |
| Bso31I | GGTCTC | 1 cut(s) | 364 |
| BsoBI | CYCGRG | 1 cut(s) | 685 |
| Bsp1286I | GDGCHC | 1 cut(s) | 49 |
| Bsp13I | TCCGGA | 1 cut(s) | 409 |
| Bsp1407I | TGTACA | 2 cut(s) | 54, 154 |
| Bsp143I | GATC | 3 cut(s) | 878, 954, 1022 |
| BspACI | CCGC | 4 cut(s) | 107, 397, 633, 971 |
| BspANI | GGCC | 2 cut(s) | 392, 671 |
| BspDI | ATCGAT | 1 cut(s) | 1021 |
| BspEI | TCCGGA | 1 cut(s) | 409 |
| BspLI | GGNNCC | 1 cut(s) | 405 |
| BspPI | GGATC | 2 cut(s) | 949, 1017 |
| BspTNI | GGTCTC | 1 cut(s) | 364 |
| BsrBI | CCGCTC | 1 cut(s) | 971 |
| BsrGI | TGTACA | 2 cut(s) | 54, 154 |
| BssECI | CCNNGG | 1 cut(s) | 686 |
| BssMI | GATC | 3 cut(s) | 878, 954, 1022 |
| Bst4CI | ACNGT | 1 cut(s) | 529 |
| Bst6I | CTCTTC | 1 cut(s) | 717 |
| BstAUI | TGTACA | 2 cut(s) | 54, 154 |
| BstBAI | YACGTR | 1 cut(s) | 264 |
| BstDEI | CTNAG | 4 cut(s) | 113, 309, 521, 821 |
| BstF5I | GGATG | 6 cut(s) | 75, 103, 161, 225, 424, 743 |
| BstKTI | GATC | 3 cut(s) | 881, 957, 1025 |
| BstMAI | GTCTC | 2 cut(s) | 364, 704 |
| BstMBI | GATC | 3 cut(s) | 878, 954, 1022 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 578 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 16 |
| BstV2I | GAAGAC | 1 cut(s) | 16 |
| BstX2I | RGATCY | 1 cut(s) | 954 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 400, 1003 |
| BstYI | RGATCY | 1 cut(s) | 954 |
| Bsu15I | ATCGAT | 1 cut(s) | 1021 |
| BsuI | GTATCC | 1 cut(s) | 239 |
| BsuRI | GGCC | 2 cut(s) | 392, 671 |
| BsuTUI | ATCGAT | 1 cut(s) | 1021 |
| BtsCI | GGATG | 6 cut(s) | 75, 103, 161, 225, 424, 743 |
| BtsI | GCAGTG | 1 cut(s) | 177 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| Cfr13I | GGNCC | 2 cut(s) | 404, 670 |
| ClaI | ATCGAT | 1 cut(s) | 1021 |
| Csp6I | GTAC | 7 cut(s) | 27, 55, 155, 691, 843, 890, 1012 |
| CviAII | CATG | 1 cut(s) | 58 |
| CviJI | RGCY | 8 cut(s) | 47, 112, 392, 599, 613, 671, 732, 995 |
| CviKI_1 | RGCY | 8 cut(s) | 47, 112, 392, 599, 613, 671, 732, 995 |
| CviQI | GTAC | 7 cut(s) | 27, 55, 155, 691, 843, 890, 1012 |
| DdeI | CTNAG | 4 cut(s) | 113, 309, 521, 821 |
| DpnI | GATC | 3 cut(s) | 880, 956, 1024 |
| DpnII | GATC | 3 cut(s) | 878, 954, 1022 |
| DraI | TTTAAA | 2 cut(s) | 295, 567 |
| DraIII | CACNNNGTG | 1 cut(s) | 252 |
| Eam1104I | CTCTTC | 1 cut(s) | 717 |
| EarI | CTCTTC | 1 cut(s) | 717 |
| EciI | GGCGGA | 1 cut(s) | 122 |
| Eco24I | GRGCYC | 1 cut(s) | 49 |
| Eco31I | GGTCTC | 1 cut(s) | 364 |
| Eco47I | GGWCC | 1 cut(s) | 404 |
| Eco88I | CYCGRG | 1 cut(s) | 685 |
| EcoO109I | RGGNCCY | 1 cut(s) | 404 |
| EcoT22I | ATGCAT | 1 cut(s) | 802 |
| EcoT38I | GRGCYC | 1 cut(s) | 49 |
| FaeI | CATG | 1 cut(s) | 61 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 217, 249 |
| FatI | CATG | 1 cut(s) | 57 |
| FauI | CCCGC | 1 cut(s) | 390 |
| FokI | GGATG | 6 cut(s) | 62, 110, 148, 232, 431, 750 |
| FriOI | GRGCYC | 1 cut(s) | 49 |
| FspBI | CTAG | 3 cut(s) | 719, 846, 893 |
| GsaI | CCCAGC | 1 cut(s) | 170 |
| HaeIII | GGCC | 2 cut(s) | 392, 671 |
| HapII | CCGG | 1 cut(s) | 410 |
| Hin1II | CATG | 1 cut(s) | 61 |
| HinfI | GANTC | 4 cut(s) | 12, 179, 329, 652 |
| HpaII | CCGG | 1 cut(s) | 410 |
| HphI | GGTGA | 5 cut(s) | 391, 448, 541, 647, 661 |
| Hpy166II | GTNNAC | 2 cut(s) | 157, 448 |
| Hpy188III | TCNNGA | 3 cut(s) | 361, 410, 719 |
| Hpy8I | GTNNAC | 2 cut(s) | 157, 448 |
| HpyCH4III | ACNGT | 1 cut(s) | 529 |
| HpyCH4IV | ACGT | 1 cut(s) | 263 |
| HpyCH4V | TGCA | 4 cut(s) | 491, 541, 589, 800 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 578 |
| HpyF3I | CTNAG | 4 cut(s) | 113, 309, 521, 821 |
| HpySE526I | ACGT | 1 cut(s) | 263 |
| Hsp92II | CATG | 1 cut(s) | 61 |
| Kpn2I | TCCGGA | 1 cut(s) | 409 |
| Kzo9I | GATC | 3 cut(s) | 878, 954, 1022 |
| LmnI | GCTCC | 2 cut(s) | 109, 871 |
| LpnPI | CCDG | 2 cut(s) | 180, 423 |
| LweI | GCATC | 1 cut(s) | 118 |
| MaeI | CTAG | 3 cut(s) | 719, 846, 893 |
| MaeII | ACGT | 1 cut(s) | 263 |
| MaeIII | GTNAC | 6 cut(s) | 71, 244, 379, 635, 740, 781 |
| MalI | GATC | 3 cut(s) | 880, 956, 1024 |
| MbiI | CCGCTC | 1 cut(s) | 971 |
| MboI | GATC | 3 cut(s) | 878, 954, 1022 |
| MboII | GAAGA | 4 cut(s) | 21, 566, 734, 964 |
| MflI | RGATCY | 1 cut(s) | 954 |
| MhlI | GDGCHC | 1 cut(s) | 49 |
| MluCI | AATT | 5 cut(s) | 82, 139, 462, 561, 695 |
| MlyI | GAGTC | 2 cut(s) | 6, 188 |
| MmeI | TCCRAC | 3 cut(s) | 156, 527, 687 |
| Mph1103I | ATGCAT | 1 cut(s) | 802 |
| MroI | TCCGGA | 1 cut(s) | 409 |
| MseI | TTAA | 7 cut(s) | 93, 276, 294, 515, 566, 771, 1017 |
| MslI | CAYNNNNRTG | 1 cut(s) | 322 |
| MspI | CCGG | 1 cut(s) | 410 |
| Mva1269I | GAATGC | 1 cut(s) | 262 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 578 |
| NdeII | GATC | 3 cut(s) | 878, 954, 1022 |
| NlaIII | CATG | 1 cut(s) | 61 |
| NlaIV | GGNNCC | 1 cut(s) | 405 |
| NmuCI | GTSAC | 5 cut(s) | 71, 244, 379, 635, 740 |
| NsiI | ATGCAT | 1 cut(s) | 802 |
| PctI | GAATGC | 1 cut(s) | 262 |
| PfeI | GAWTC | 2 cut(s) | 329, 652 |
| PleI | GAGTC | 2 cut(s) | 6, 187 |
| PpsI | GAGTC | 2 cut(s) | 6, 187 |
| Ppu21I | YACGTR | 1 cut(s) | 264 |
| PpuMI | RGGWCCY | 1 cut(s) | 404 |
| PshAI | GACNNNNGTC | 1 cut(s) | 16 |
| PsiI | TTATAA | 1 cut(s) | 468 |
| Psp5II | RGGWCCY | 1 cut(s) | 404 |
| PspFI | CCCAGC | 1 cut(s) | 166 |
| PspN4I | GGNNCC | 1 cut(s) | 405 |
| PspPI | GGNCC | 2 cut(s) | 404, 670 |
| PspPPI | RGGWCCY | 1 cut(s) | 404 |
| PsuI | RGATCY | 1 cut(s) | 954 |
| RsaI | GTAC | 7 cut(s) | 28, 56, 156, 692, 844, 891, 1013 |
| RsaNI | GTAC | 7 cut(s) | 27, 55, 155, 691, 843, 890, 1012 |
| RseI | CAYNNNNRTG | 1 cut(s) | 322 |
| SaqAI | TTAA | 7 cut(s) | 93, 276, 294, 515, 566, 771, 1017 |
| Sau3AI | GATC | 3 cut(s) | 878, 954, 1022 |
| Sau96I | GGNCC | 2 cut(s) | 404, 670 |
| ScaI | AGTACT | 1 cut(s) | 844 |
| SchI | GAGTC | 2 cut(s) | 6, 188 |
| SduI | GDGCHC | 1 cut(s) | 49 |
| SfaNI | GCATC | 1 cut(s) | 118 |
| SinI | GGWCC | 1 cut(s) | 404 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 322 |
| SmlI | CTYRAG | 2 cut(s) | 14, 614 |
| SmoI | CTYRAG | 2 cut(s) | 14, 614 |
| SpeI | ACTAGT | 1 cut(s) | 845 |
| Sse9I | AATT | 5 cut(s) | 82, 139, 462, 561, 695 |
| SsiI | CCGC | 4 cut(s) | 107, 397, 633, 971 |
| SspI | AATATT | 2 cut(s) | 194, 629 |
| SspMI | CTAG | 3 cut(s) | 719, 846, 893 |
| TaaI | ACNGT | 1 cut(s) | 529 |
| TaiI | ACGT | 1 cut(s) | 266 |
| TaqI | TCGA | 3 cut(s) | 362, 681, 1021 |
| TasI | AATT | 5 cut(s) | 82, 139, 462, 561, 695 |
| TatI | WGTACW | 5 cut(s) | 54, 154, 842, 889, 1011 |
| TfiI | GAWTC | 2 cut(s) | 329, 652 |
| Tru1I | TTAA | 7 cut(s) | 93, 276, 294, 515, 566, 771, 1017 |
| Tru9I | TTAA | 7 cut(s) | 93, 276, 294, 515, 566, 771, 1017 |
| TscAI | CASTG | 1 cut(s) | 177 |
| TseFI | GTSAC | 5 cut(s) | 71, 244, 379, 635, 740 |
| Tsp45I | GTSAC | 5 cut(s) | 71, 244, 379, 635, 740 |
| TspDTI | ATGAA | 3 cut(s) | 17, 623, 1014 |
| TspRI | CASTG | 1 cut(s) | 177 |
| VpaK11BI | GGWCC | 1 cut(s) | 404 |
| XapI | RAATTY | 3 cut(s) | 462, 561, 695 |
| XbaI | TCTAGA | 1 cut(s) | 718 |
| XspI | CTAG | 3 cut(s) | 719, 846, 893 |
| ZrmI | AGTACT | 1 cut(s) | 844 |
| Zsp2I | ATGCAT | 1 cut(s) | 802 |