Zinc finger BED domain-containing protein DAYSLEEPER-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 752 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 699 |
| AatII | GACGTC | 1 cut(s) | 1973 |
| Acc16I | TGCGCA | 2 cut(s) | 2008, 2055 |
| AccI | GTMKAC | 2 cut(s) | 401, 1497 |
| AccII | CGCG | 1 cut(s) | 851 |
| AciI | CCGC | 4 cut(s) | 233, 851, 932, 2046 |
| AclWI | GGATC | 7 cut(s) | 1262, 1448, 1461, 1544, 1557, 1636, 1649 |
| AcoI | YGGCCR | 1 cut(s) | 1536 |
| AcuI | CTGAAG | 4 cut(s) | 1212, 1275, 1355, 1719 |
| AcyI | GRCGYC | 1 cut(s) | 1970 |
| AfaI | GTAC | 9 cut(s) | 11, 77, 143, 316, 1505, 1739, 1787, 1862, 1964 |
| AflII | CTTAAG | 1 cut(s) | 326 |
| AflIII | ACRYGT | 2 cut(s) | 350, 1734 |
| AgeI | ACCGGT | 1 cut(s) | 444 |
| AgsI | TTSAA | 6 cut(s) | 623, 938, 1151, 1367, 1561, 1899 |
| AjnI | CCWGG | 5 cut(s) | 556, 688, 970, 1044, 1808 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1541, 1573 |
| Alw21I | GWGCWC | 2 cut(s) | 1137, 1653 |
| AlwI | GGATC | 7 cut(s) | 1262, 1448, 1461, 1544, 1557, 1636, 1649 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 830, 1765 |
| Ama87I | CYCGRG | 2 cut(s) | 1434, 1982 |
| AoxI | GGCC | 2 cut(s) | 1536, 1979 |
| ApeKI | GCWGC | 5 cut(s) | 1223, 1913, 1916, 2048, 2051 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1916, 1948 |
| AsiGI | ACCGGT | 1 cut(s) | 444 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 684, 1146, 2019 |
| AspLEI | GCGC | 3 cut(s) | 1672, 2009, 2056 |
| AspS9I | GGNCC | 3 cut(s) | 720, 1780, 1980 |
| AsuC2I | CCSGG | 3 cut(s) | 917, 1079, 1904 |
| AsuHPI | GGTGA | 6 cut(s) | 27, 93, 156, 895, 1555, 1648 |
| AsuII | TTCGAA | 1 cut(s) | 1347 |
| AvaI | CYCGRG | 2 cut(s) | 1434, 1982 |
| AvaII | GGWCC | 2 cut(s) | 720, 1780 |
| BamHI | GGATCC | 3 cut(s) | 1453, 1549, 1641 |
| BanII | GRGCYC | 2 cut(s) | 1137, 1653 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2023, 2055 |
| BauI | CACGAG | 2 cut(s) | 1249, 1646 |
| BbsI | GAAGAC | 1 cut(s) | 1421 |
| Bbv12I | GWGCWC | 2 cut(s) | 1137, 1653 |
| BbvI | GCAGC | 5 cut(s) | 1210, 1900, 1928, 2038, 2060 |
| BceAI | ACGGC | 1 cut(s) | 1523 |
| BciT130I | CCWGG | 5 cut(s) | 558, 690, 972, 1046, 1810 |
| BciVI | GTATCC | 1 cut(s) | 831 |
| BclI | TGATCA | 3 cut(s) | 516, 1065, 1183 |
| BcnI | CCSGG | 3 cut(s) | 917, 1079, 1904 |
| BfaI | CTAG | 3 cut(s) | 318, 462, 1884 |
| BfmI | CTRYAG | 3 cut(s) | 247, 1516, 1914 |
| BfoI | RGCGCY | 1 cut(s) | 1673 |
| BfrI | CTTAAG | 1 cut(s) | 326 |
| BfuI | GTATCC | 1 cut(s) | 831 |
| BisI | GCNGC | 5 cut(s) | 1224, 1914, 1917, 2049, 2052 |
| BlsI | GCNGC | 5 cut(s) | 1225, 1915, 1918, 2050, 2053 |
| BmcAI | AGTACT | 1 cut(s) | 1505 |
| Bme1390I | CCNGG | 8 cut(s) | 558, 690, 917, 972, 1046, 1079, 1810, 1904 |
| Bme18I | GGWCC | 2 cut(s) | 720, 1780 |
| BmeT110I | CYCGRG | 2 cut(s) | 1434, 1982 |
| BmgT120I | GGNCC | 3 cut(s) | 720, 1780, 1980 |
| BmiI | GGNNCC | 4 cut(s) | 1455, 1551, 1643, 1944 |
| BmrFI | CCNGG | 8 cut(s) | 558, 690, 917, 972, 1046, 1079, 1810, 1904 |
| BmsI | GCATC | 5 cut(s) | 562, 589, 969, 1203, 1597 |
| BoxI | GACNNNNGTC | 1 cut(s) | 492 |
| BpiI | GAAGAC | 1 cut(s) | 1421 |
| BpmI | CTGGAG | 4 cut(s) | 902, 1067, 1467, 1528 |
| Bpu14I | TTCGAA | 1 cut(s) | 1347 |
| BpuEI | CTTGAG | 4 cut(s) | 862, 1121, 1841, 2045 |
| BpuMI | CCSGG | 3 cut(s) | 917, 1079, 1904 |
| BsaAI | YACGTR | 1 cut(s) | 1737 |
| BsaHI | GRCGYC | 1 cut(s) | 1970 |
| BsaI | GGTCTC | 2 cut(s) | 164, 453 |
| BsaJI | CCNNGG | 7 cut(s) | 970, 971, 1539, 1553, 1808, 1809, 1946 |
| BsaWI | WCCGGW | 1 cut(s) | 444 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 412, 442, 618, 648, 875, 905, 1501, 1531 |
| Bse118I | RCCGGY | 1 cut(s) | 444 |
| Bse1I | ACTGG | 4 cut(s) | 1378, 1511, 1783, 1841 |
| Bse3DI | GCAATG | 2 cut(s) | 1199, 1539 |
| BseBI | CCWGG | 5 cut(s) | 558, 690, 972, 1046, 1810 |
| BseDI | CCNNGG | 7 cut(s) | 970, 971, 1539, 1553, 1808, 1809, 1946 |
| BseGI | GGATG | 7 cut(s) | 275, 553, 988, 1074, 1639, 1890, 1963 |
| BseMI | GCAATG | 2 cut(s) | 1199, 1539 |
| BseMII | CTCAG | 3 cut(s) | 464, 1122, 1967 |
| BseNI | ACTGG | 4 cut(s) | 1378, 1511, 1783, 1841 |
| BseRI | GAGGAG | 1 cut(s) | 1133 |
| BseXI | GCAGC | 5 cut(s) | 1210, 1900, 1928, 2038, 2060 |
| BseYI | CCCAGC | 1 cut(s) | 1610 |
| BsgI | GTGCAG | 2 cut(s) | 342, 596 |
| Bsh1236I | CGCG | 1 cut(s) | 851 |
| BshFI | GGCC | 2 cut(s) | 1538, 1981 |
| BshTI | ACCGGT | 1 cut(s) | 444 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1137, 1653 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1434, 1982 |
| BsiSI | CCGG | 4 cut(s) | 445, 917, 1078, 1904 |
| BslFI | GGGAC | 4 cut(s) | 361, 450, 1094, 1096 |
| BsmFI | GGGAC | 4 cut(s) | 361, 450, 1094, 1096 |
| BsnI | GGCC | 2 cut(s) | 1538, 1981 |
| Bso31I | GGTCTC | 2 cut(s) | 164, 453 |
| BsoBI | CYCGRG | 2 cut(s) | 1434, 1982 |
| Bsp119I | TTCGAA | 1 cut(s) | 1347 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1137, 1653 |
| Bsp1407I | TGTACA | 3 cut(s) | 9, 75, 141 |
| Bsp143I | GATC | 8 cut(s) | 180, 516, 1065, 1183, 1267, 1453, 1549, 1641 |
| BspACI | CCGC | 4 cut(s) | 233, 851, 932, 2046 |
| BspANI | GGCC | 2 cut(s) | 1538, 1981 |
| BspCNI | CTCAG | 3 cut(s) | 463, 1123, 1968 |
| BspFNI | CGCG | 1 cut(s) | 851 |
| BspHI | TCATGA | 1 cut(s) | 666 |
| BspLI | GGNNCC | 4 cut(s) | 1455, 1551, 1643, 1944 |
| BspMAI | CTGCAG | 2 cut(s) | 251, 1918 |
| BspPI | GGATC | 7 cut(s) | 1262, 1448, 1461, 1544, 1557, 1636, 1649 |
| BspQI | GCTCTTC | 2 cut(s) | 247, 1658 |
| BspT104I | TTCGAA | 1 cut(s) | 1347 |
| BspTI | CTTAAG | 1 cut(s) | 326 |
| BspTNI | GGTCTC | 2 cut(s) | 164, 453 |
| BsrDI | GCAATG | 2 cut(s) | 1199, 1539 |
| BsrFI | RCCGGY | 1 cut(s) | 444 |
| BsrGI | TGTACA | 3 cut(s) | 9, 75, 141 |
| BsrI | ACTGG | 4 cut(s) | 1378, 1511, 1783, 1841 |
| BssAI | RCCGGY | 1 cut(s) | 444 |
| BssECI | CCNNGG | 7 cut(s) | 970, 971, 1539, 1553, 1808, 1809, 1946 |
| BssMI | GATC | 8 cut(s) | 180, 516, 1065, 1183, 1267, 1453, 1549, 1641 |
| BssNI | GRCGYC | 1 cut(s) | 1970 |
| BssSI | CACGAG | 2 cut(s) | 1249, 1646 |
| Bst2BI | CACGAG | 2 cut(s) | 1249, 1646 |
| Bst2UI | CCWGG | 5 cut(s) | 558, 690, 972, 1046, 1810 |
| Bst4CI | ACNGT | 8 cut(s) | 299, 632, 1085, 1422, 1517, 1630, 1722, 1990 |
| Bst6I | CTCTTC | 4 cut(s) | 247, 543, 1368, 1658 |
| BstACI | GRCGYC | 1 cut(s) | 1970 |
| BstAFI | CTTAAG | 1 cut(s) | 326 |
| BstAUI | TGTACA | 3 cut(s) | 9, 75, 141 |
| BstBAI | YACGTR | 1 cut(s) | 1737 |
| BstBI | TTCGAA | 1 cut(s) | 1347 |
| BstDEI | CTNAG | 5 cut(s) | 450, 510, 1131, 1255, 1976 |
| BstDSI | CCRYGG | 1 cut(s) | 1539 |
| BstEII | GGTNACC | 2 cut(s) | 33, 99 |
| BstF5I | GGATG | 7 cut(s) | 275, 553, 988, 1074, 1639, 1890, 1963 |
| BstFNI | CGCG | 1 cut(s) | 851 |
| BstH2I | RGCGCY | 1 cut(s) | 1673 |
| BstHHI | GCGC | 3 cut(s) | 1672, 2009, 2056 |
| BstKTI | GATC | 8 cut(s) | 183, 519, 1068, 1186, 1270, 1456, 1552, 1644 |
| BstMBI | GATC | 8 cut(s) | 180, 516, 1065, 1183, 1267, 1453, 1549, 1641 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 836, 1678, 2060 |
| BstNI | CCWGG | 5 cut(s) | 558, 690, 972, 1046, 1810 |
| BstNSI | RCATGY | 3 cut(s) | 354, 1097, 1313 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 492 |
| BstPI | GGTNACC | 2 cut(s) | 33, 99 |
| BstSCI | CCNGG | 8 cut(s) | 556, 688, 915, 970, 1044, 1077, 1808, 1902 |
| BstSFI | CTRYAG | 3 cut(s) | 247, 1516, 1914 |
| BstUI | CGCG | 1 cut(s) | 851 |
| BstV1I | GCAGC | 5 cut(s) | 1210, 1900, 1928, 2038, 2060 |
| BstV2I | GAAGAC | 1 cut(s) | 1421 |
| BstX2I | RGATCY | 3 cut(s) | 1453, 1549, 1641 |
| BstYI | RGATCY | 3 cut(s) | 1453, 1549, 1641 |
| BsuI | GTATCC | 1 cut(s) | 831 |
| BsuRI | GGCC | 2 cut(s) | 1538, 1981 |
| BtgI | CCRYGG | 1 cut(s) | 1539 |
| BtsCI | GGATG | 7 cut(s) | 275, 553, 988, 1074, 1639, 1890, 1963 |
| BtsI | GCAGTG | 1 cut(s) | 1260 |
| BtsIMutI | CAGTG | 6 cut(s) | 150, 392, 1090, 1260, 1973, 1995 |
| CaiI | CAGNNNCTG | 2 cut(s) | 830, 1765 |
| CciI | TCATGA | 1 cut(s) | 666 |
| CfoI | GCGC | 3 cut(s) | 1672, 2009, 2056 |
| Cfr10I | RCCGGY | 1 cut(s) | 444 |
| Cfr13I | GGNCC | 3 cut(s) | 720, 1780, 1980 |
| CseI | GACGC | 4 cut(s) | 198, 320, 702, 1198 |
| Csp6I | GTAC | 9 cut(s) | 10, 76, 142, 315, 1504, 1738, 1786, 1861, 1963 |
| CspAI | ACCGGT | 1 cut(s) | 444 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1521, 1556 |
| CviQI | GTAC | 9 cut(s) | 10, 76, 142, 315, 1504, 1738, 1786, 1861, 1963 |
| DdeI | CTNAG | 5 cut(s) | 450, 510, 1131, 1255, 1976 |
| DpnI | GATC | 8 cut(s) | 182, 518, 1067, 1185, 1269, 1455, 1551, 1643 |
| DpnII | GATC | 8 cut(s) | 180, 516, 1065, 1183, 1267, 1453, 1549, 1641 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 699 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 699 |
| EaeI | YGGCCR | 1 cut(s) | 1536 |
| Eam1104I | CTCTTC | 4 cut(s) | 247, 543, 1368, 1658 |
| EarI | CTCTTC | 4 cut(s) | 247, 543, 1368, 1658 |
| Ecl136II | GAGCTC | 2 cut(s) | 1135, 1651 |
| Eco24I | GRGCYC | 2 cut(s) | 1137, 1653 |
| Eco31I | GGTCTC | 2 cut(s) | 164, 453 |
| Eco47I | GGWCC | 2 cut(s) | 720, 1780 |
| Eco53kI | GAGCTC | 2 cut(s) | 1135, 1651 |
| Eco57I | CTGAAG | 4 cut(s) | 1212, 1275, 1355, 1719 |
| Eco88I | CYCGRG | 2 cut(s) | 1434, 1982 |
| Eco91I | GGTNACC | 2 cut(s) | 33, 99 |
| EcoICRI | GAGCTC | 2 cut(s) | 1135, 1651 |
| EcoO65I | GGTNACC | 2 cut(s) | 33, 99 |
| EcoRII | CCWGG | 5 cut(s) | 556, 688, 970, 1044, 1808 |
| EcoT22I | ATGCAT | 1 cut(s) | 528 |
| EcoT38I | GRGCYC | 2 cut(s) | 1137, 1653 |
| FaqI | GGGAC | 4 cut(s) | 361, 450, 1094, 1096 |
| FbaI | TGATCA | 3 cut(s) | 516, 1065, 1183 |
| FblI | GTMKAC | 2 cut(s) | 401, 1497 |
| Fnu4HI | GCNGC | 5 cut(s) | 1224, 1914, 1917, 2049, 2052 |
| FokI | GGATG | 7 cut(s) | 282, 540, 995, 1061, 1646, 1877, 1970 |
| FriOI | GRGCYC | 2 cut(s) | 1137, 1653 |
| Fsp4HI | GCNGC | 5 cut(s) | 1224, 1914, 1917, 2049, 2052 |
| FspBI | CTAG | 3 cut(s) | 318, 462, 1884 |
| FspI | TGCGCA | 2 cut(s) | 2008, 2055 |
| GlaI | GCGC | 3 cut(s) | 1671, 2008, 2055 |
| GluI | GCNGC | 5 cut(s) | 1224, 1914, 1917, 2049, 2052 |
| GsaI | CCCAGC | 1 cut(s) | 1614 |
| GsuI | CTGGAG | 4 cut(s) | 902, 1067, 1467, 1528 |
| HaeII | RGCGCY | 1 cut(s) | 1673 |
| HaeIII | GGCC | 2 cut(s) | 1538, 1981 |
| HapII | CCGG | 4 cut(s) | 445, 917, 1078, 1904 |
| HgaI | GACGC | 4 cut(s) | 198, 320, 702, 1198 |
| HhaI | GCGC | 3 cut(s) | 1672, 2009, 2056 |
| Hin1I | GRCGYC | 1 cut(s) | 1970 |
| Hin6I | GCGC | 3 cut(s) | 1670, 2007, 2054 |
| HinP1I | GCGC | 3 cut(s) | 1670, 2007, 2054 |
| HindIII | AAGCTT | 2 cut(s) | 794, 1568 |
| HinfI | GANTC | 6 cut(s) | 685, 815, 844, 976, 1109, 1762 |
| HpaII | CCGG | 4 cut(s) | 445, 917, 1078, 1904 |
| HphI | GGTGA | 6 cut(s) | 27, 93, 156, 895, 1555, 1648 |
| Hpy166II | GTNNAC | 6 cut(s) | 10, 76, 142, 402, 1128, 1498 |
| Hpy8I | GTNNAC | 6 cut(s) | 10, 76, 142, 402, 1128, 1498 |
| Hpy99I | CGWCG | 2 cut(s) | 192, 1681 |
| HpyAV | CCTTC | 7 cut(s) | 429, 674, 1159, 1299, 1405, 1486, 1694 |
| HpyCH4III | ACNGT | 8 cut(s) | 299, 632, 1085, 1422, 1517, 1630, 1722, 1990 |
| HpyCH4IV | ACGT | 4 cut(s) | 900, 1103, 1736, 1970 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 836, 1678, 2060 |
| HpyF3I | CTNAG | 5 cut(s) | 450, 510, 1131, 1255, 1976 |
| HpySE526I | ACGT | 4 cut(s) | 900, 1103, 1736, 1970 |
| Hsp92I | GRCGYC | 1 cut(s) | 1970 |
| HspAI | GCGC | 3 cut(s) | 1670, 2007, 2054 |
| Ksp22I | TGATCA | 3 cut(s) | 516, 1065, 1183 |
| Kzo9I | GATC | 8 cut(s) | 180, 516, 1065, 1183, 1267, 1453, 1549, 1641 |
| LguI | GCTCTTC | 2 cut(s) | 247, 1658 |
| LmnI | GCTCC | 1 cut(s) | 1677 |
| Lsp1109I | GCAGC | 5 cut(s) | 1210, 1900, 1928, 2038, 2060 |
| LweI | GCATC | 5 cut(s) | 562, 589, 969, 1203, 1597 |
| MaeI | CTAG | 3 cut(s) | 318, 462, 1884 |
| MaeII | ACGT | 4 cut(s) | 900, 1103, 1736, 1970 |
| MalI | GATC | 8 cut(s) | 182, 518, 1067, 1185, 1269, 1455, 1551, 1643 |
| MboI | GATC | 8 cut(s) | 180, 516, 1065, 1183, 1267, 1453, 1549, 1641 |
| MflI | RGATCY | 3 cut(s) | 1453, 1549, 1641 |
| MhlI | GDGCHC | 2 cut(s) | 1137, 1653 |
| MluCI | AATT | 3 cut(s) | 859, 1003, 1232 |
| MlyI | GAGTC | 2 cut(s) | 853, 1118 |
| MmeI | TCCRAC | 1 cut(s) | 1704 |
| Mph1103I | ATGCAT | 1 cut(s) | 528 |
| MroXI | GAANNNNTTC | 3 cut(s) | 684, 1146, 2019 |
| MseI | TTAA | 7 cut(s) | 327, 342, 480, 612, 897, 909, 1235 |
| MslI | CAYNNNNRTG | 4 cut(s) | 155, 372, 378, 597 |
| MspA1I | CMGCKG | 2 cut(s) | 1913, 2051 |
| MspCI | CTTAAG | 1 cut(s) | 326 |
| MspI | CCGG | 4 cut(s) | 445, 917, 1078, 1904 |
| MspR9I | CCNGG | 8 cut(s) | 558, 690, 917, 972, 1046, 1079, 1810, 1904 |
| MvaI | CCWGG | 5 cut(s) | 558, 690, 972, 1046, 1810 |
| MvnI | CGCG | 1 cut(s) | 851 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 836, 1678, 2060 |
| NciI | CCSGG | 3 cut(s) | 917, 1079, 1904 |
| NdeII | GATC | 8 cut(s) | 180, 516, 1065, 1183, 1267, 1453, 1549, 1641 |
| NlaIV | GGNNCC | 4 cut(s) | 1455, 1551, 1643, 1944 |
| NmuCI | GTSAC | 6 cut(s) | 33, 99, 332, 901, 1462, 1971 |
| NsbI | TGCGCA | 2 cut(s) | 2008, 2055 |
| NsiI | ATGCAT | 1 cut(s) | 528 |
| NspI | RCATGY | 3 cut(s) | 354, 1097, 1313 |
| NspV | TTCGAA | 1 cut(s) | 1347 |
| PagI | TCATGA | 1 cut(s) | 666 |
| PasI | CCCWGGG | 2 cut(s) | 971, 1809 |
| PciI | ACATGT | 1 cut(s) | 350 |
| PciSI | GCTCTTC | 2 cut(s) | 247, 1658 |
| PdmI | GAANNNNTTC | 3 cut(s) | 684, 1146, 2019 |
| PfeI | GAWTC | 4 cut(s) | 685, 815, 976, 1762 |
| PflFI | GACNNNGTC | 3 cut(s) | 1420, 1870, 1928 |
| PfoI | TCCNGGA | 3 cut(s) | 688, 1044, 1077 |
| PinAI | ACCGGT | 1 cut(s) | 444 |
| PkrI | GCNGC | 5 cut(s) | 1225, 1915, 1918, 2050, 2053 |
| PleI | GAGTC | 2 cut(s) | 852, 1117 |
| PpsI | GAGTC | 2 cut(s) | 852, 1117 |
| Ppu21I | YACGTR | 1 cut(s) | 1737 |
| PscI | ACATGT | 1 cut(s) | 350 |
| PshAI | GACNNNNGTC | 1 cut(s) | 492 |
| PsiI | TTATAA | 1 cut(s) | 752 |
| Psp124BI | GAGCTC | 2 cut(s) | 1137, 1653 |
| Psp6I | CCWGG | 5 cut(s) | 556, 688, 970, 1044, 1808 |
| PspEI | GGTNACC | 2 cut(s) | 33, 99 |
| PspFI | CCCAGC | 1 cut(s) | 1610 |
| PspGI | CCWGG | 5 cut(s) | 556, 688, 970, 1044, 1808 |
| PspN4I | GGNNCC | 4 cut(s) | 1455, 1551, 1643, 1944 |
| PspPI | GGNCC | 3 cut(s) | 720, 1780, 1980 |
| PstI | CTGCAG | 2 cut(s) | 251, 1918 |
| PstNI | CAGNNNCTG | 2 cut(s) | 830, 1765 |
| PsuI | RGATCY | 3 cut(s) | 1453, 1549, 1641 |
| PsyI | GACNNNGTC | 3 cut(s) | 1420, 1870, 1928 |
| PvuII | CAGCTG | 2 cut(s) | 1913, 2051 |
| RsaI | GTAC | 9 cut(s) | 11, 77, 143, 316, 1505, 1739, 1787, 1862, 1964 |
| RsaNI | GTAC | 9 cut(s) | 10, 76, 142, 315, 1504, 1738, 1786, 1861, 1963 |
| RseI | CAYNNNNRTG | 4 cut(s) | 155, 372, 378, 597 |
| SacI | GAGCTC | 2 cut(s) | 1137, 1653 |
| SapI | GCTCTTC | 2 cut(s) | 247, 1658 |
| SaqAI | TTAA | 7 cut(s) | 327, 342, 480, 612, 897, 909, 1235 |
| SatI | GCNGC | 5 cut(s) | 1224, 1914, 1917, 2049, 2052 |
| Sau3AI | GATC | 8 cut(s) | 180, 516, 1065, 1183, 1267, 1453, 1549, 1641 |
| Sau96I | GGNCC | 3 cut(s) | 720, 1780, 1980 |
| ScaI | AGTACT | 1 cut(s) | 1505 |
| SchI | GAGTC | 2 cut(s) | 853, 1118 |
| ScrFI | CCNGG | 8 cut(s) | 558, 690, 917, 972, 1046, 1079, 1810, 1904 |
| SduI | GDGCHC | 2 cut(s) | 1137, 1653 |
| SfaNI | GCATC | 5 cut(s) | 562, 589, 969, 1203, 1597 |
| SfcI | CTRYAG | 3 cut(s) | 247, 1516, 1914 |
| SfuI | TTCGAA | 1 cut(s) | 1347 |
| SinI | GGWCC | 2 cut(s) | 720, 1780 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 155, 372, 378, 597 |
| SmlI | CTYRAG | 5 cut(s) | 326, 841, 1136, 1856, 2024 |
| SmoI | CTYRAG | 5 cut(s) | 326, 841, 1136, 1856, 2024 |
| Sse9I | AATT | 3 cut(s) | 859, 1003, 1232 |
| SsiI | CCGC | 4 cut(s) | 233, 851, 932, 2046 |
| SspMI | CTAG | 3 cut(s) | 318, 462, 1884 |
| SstI | GAGCTC | 2 cut(s) | 1137, 1653 |
| StyD4I | CCNGG | 8 cut(s) | 556, 688, 915, 970, 1044, 1077, 1808, 1902 |
| TaaI | ACNGT | 8 cut(s) | 299, 632, 1085, 1422, 1517, 1630, 1722, 1990 |
| TaiI | ACGT | 4 cut(s) | 903, 1106, 1739, 1973 |
| TaqI | TCGA | 5 cut(s) | 203, 228, 711, 1347, 1575 |
| TasI | AATT | 3 cut(s) | 859, 1003, 1232 |
| TatI | WGTACW | 5 cut(s) | 9, 75, 141, 1503, 1962 |
| TfiI | GAWTC | 4 cut(s) | 685, 815, 976, 1762 |
| Tru1I | TTAA | 7 cut(s) | 327, 342, 480, 612, 897, 909, 1235 |
| Tru9I | TTAA | 7 cut(s) | 327, 342, 480, 612, 897, 909, 1235 |
| TscAI | CASTG | 6 cut(s) | 157, 399, 1090, 1267, 1980, 1995 |
| TseFI | GTSAC | 6 cut(s) | 33, 99, 332, 901, 1462, 1971 |
| TseI | GCWGC | 5 cut(s) | 1223, 1913, 1916, 2048, 2051 |
| Tsp45I | GTSAC | 6 cut(s) | 33, 99, 332, 901, 1462, 1971 |
| TspDTI | ATGAA | 4 cut(s) | 683, 1419, 1580, 1809 |
| TspRI | CASTG | 6 cut(s) | 157, 399, 1090, 1267, 1980, 1995 |
| Tth111I | GACNNNGTC | 3 cut(s) | 1420, 1870, 1928 |
| Vha464I | CTTAAG | 1 cut(s) | 326 |
| VpaK11BI | GGWCC | 2 cut(s) | 720, 1780 |
| XceI | RCATGY | 3 cut(s) | 354, 1097, 1313 |
| XmiI | GTMKAC | 2 cut(s) | 401, 1497 |
| XmnI | GAANNNNTTC | 3 cut(s) | 684, 1146, 2019 |
| XspI | CTAG | 3 cut(s) | 318, 462, 1884 |
| ZraI | GACGTC | 1 cut(s) | 1971 |
| ZrmI | AGTACT | 1 cut(s) | 1505 |
| Zsp2I | ATGCAT | 1 cut(s) | 528 |