Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 245 - 343 | 2.4e-28 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 171 |
| Acc36I | ACCTGC | 1 cut(s) | 512 |
| AclWI | GGATC | 3 cut(s) | 433, 886, 911 |
| AcsI | RAATTY | 6 cut(s) | 57, 163, 322, 565, 853, 1212 |
| AfaI | GTAC | 4 cut(s) | 149, 376, 1028, 1172 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 191 |
| AgsI | TTSAA | 9 cut(s) | 8, 245, 310, 570, 781, 800, 859, 866, 988 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 338, 370 |
| AluBI | AGCT | 3 cut(s) | 119, 304, 961 |
| AluI | AGCT | 3 cut(s) | 119, 304, 961 |
| Alw26I | GTCTC | 3 cut(s) | 535, 826, 1092 |
| AlwI | GGATC | 3 cut(s) | 433, 886, 911 |
| ApeKI | GCWGC | 1 cut(s) | 89 |
| ApoI | RAATTY | 6 cut(s) | 57, 163, 322, 565, 853, 1212 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1091, 1123 |
| AseI | ATTAAT | 1 cut(s) | 341 |
| AsuC2I | CCSGG | 1 cut(s) | 193 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| BbvI | GCAGC | 1 cut(s) | 76 |
| BccI | CCATC | 5 cut(s) | 92, 341, 398, 416, 555 |
| BciVI | GTATCC | 1 cut(s) | 1066 |
| BcnI | CCSGG | 1 cut(s) | 193 |
| BcoDI | GTCTC | 3 cut(s) | 535, 826, 1092 |
| BfaI | CTAG | 1 cut(s) | 558 |
| BfuAI | ACCTGC | 1 cut(s) | 512 |
| BfuI | GTATCC | 1 cut(s) | 1066 |
| BisI | GCNGC | 1 cut(s) | 90 |
| BlsI | GCNGC | 1 cut(s) | 91 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BmrI | ACTGGG | 1 cut(s) | 1058 |
| BmsI | GCATC | 3 cut(s) | 459, 1167, 1168 |
| BmuI | ACTGGG | 1 cut(s) | 1058 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| BpuMI | CCSGG | 1 cut(s) | 193 |
| BsaBI | GATNNNNATC | 1 cut(s) | 102 |
| BsaJI | CCNNGG | 2 cut(s) | 192, 660 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 191 |
| Bse1I | ACTGG | 1 cut(s) | 1064 |
| Bse3DI | GCAATG | 1 cut(s) | 900 |
| Bse8I | GATNNNNATC | 1 cut(s) | 102 |
| BseDI | CCNNGG | 2 cut(s) | 192, 660 |
| BseGI | GGATG | 4 cut(s) | 352, 381, 997, 1039 |
| BseJI | GATNNNNATC | 1 cut(s) | 102 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 191 |
| BseMI | GCAATG | 1 cut(s) | 900 |
| BseNI | ACTGG | 1 cut(s) | 1064 |
| BseRI | GAGGAG | 1 cut(s) | 171 |
| BseXI | GCAGC | 1 cut(s) | 76 |
| BsiSI | CCGG | 1 cut(s) | 192 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 191 |
| BsmAI | GTCTC | 3 cut(s) | 535, 826, 1092 |
| Bsp1407I | TGTACA | 1 cut(s) | 1170 |
| Bsp143I | GATC | 4 cut(s) | 73, 425, 891, 916 |
| BspHI | TCATGA | 1 cut(s) | 828 |
| BspMI | ACCTGC | 1 cut(s) | 512 |
| BspPI | GGATC | 3 cut(s) | 433, 886, 911 |
| BsrDI | GCAATG | 1 cut(s) | 900 |
| BsrGI | TGTACA | 1 cut(s) | 1170 |
| BsrI | ACTGG | 1 cut(s) | 1064 |
| BssECI | CCNNGG | 2 cut(s) | 192, 660 |
| BssMI | GATC | 4 cut(s) | 73, 425, 891, 916 |
| BssT1I | CCWWGG | 1 cut(s) | 660 |
| Bst4CI | ACNGT | 1 cut(s) | 255 |
| Bst6I | CTCTTC | 1 cut(s) | 660 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1019 |
| BstAUI | TGTACA | 1 cut(s) | 1170 |
| BstF5I | GGATG | 4 cut(s) | 352, 381, 997, 1039 |
| BstKTI | GATC | 4 cut(s) | 76, 428, 894, 919 |
| BstMAI | GTCTC | 3 cut(s) | 535, 826, 1092 |
| BstMBI | GATC | 4 cut(s) | 73, 425, 891, 916 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1019 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstV1I | GCAGC | 1 cut(s) | 76 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 268, 700 |
| BsuI | GTATCC | 1 cut(s) | 1066 |
| BtsCI | GGATG | 4 cut(s) | 352, 381, 997, 1039 |
| BtsI | GCAGTG | 1 cut(s) | 912 |
| BtsIMutI | CAGTG | 2 cut(s) | 435, 912 |
| BveI | ACCTGC | 1 cut(s) | 512 |
| CciI | TCATGA | 1 cut(s) | 828 |
| Csp6I | GTAC | 4 cut(s) | 148, 375, 1027, 1171 |
| CviAII | CATG | 4 cut(s) | 362, 651, 829, 1030 |
| CviJI | RGCY | 3 cut(s) | 119, 304, 961 |
| CviKI_1 | RGCY | 3 cut(s) | 119, 304, 961 |
| CviQI | GTAC | 4 cut(s) | 148, 375, 1027, 1171 |
| DpnI | GATC | 4 cut(s) | 75, 427, 893, 918 |
| DpnII | GATC | 4 cut(s) | 73, 425, 891, 916 |
| Eam1104I | CTCTTC | 1 cut(s) | 660 |
| EarI | CTCTTC | 1 cut(s) | 660 |
| Eco130I | CCWWGG | 1 cut(s) | 660 |
| Eco32I | GATATC | 1 cut(s) | 104 |
| EcoRI | GAATTC | 1 cut(s) | 565 |
| EcoRV | GATATC | 1 cut(s) | 104 |
| EcoT14I | CCWWGG | 1 cut(s) | 660 |
| EcoT22I | ATGCAT | 1 cut(s) | 1160 |
| ErhI | CCWWGG | 1 cut(s) | 660 |
| FaeI | CATG | 4 cut(s) | 365, 654, 832, 1033 |
| FatI | CATG | 4 cut(s) | 361, 650, 828, 1029 |
| Fnu4HI | GCNGC | 1 cut(s) | 90 |
| FokI | GGATG | 4 cut(s) | 359, 368, 1004, 1046 |
| Fsp4HI | GCNGC | 1 cut(s) | 90 |
| FspBI | CTAG | 1 cut(s) | 558 |
| GluI | GCNGC | 1 cut(s) | 90 |
| HapII | CCGG | 1 cut(s) | 192 |
| Hin1II | CATG | 4 cut(s) | 365, 654, 832, 1033 |
| HincII | GTYRAC | 1 cut(s) | 130 |
| HindII | GTYRAC | 1 cut(s) | 130 |
| HindIII | AAGCTT | 1 cut(s) | 959 |
| HinfI | GANTC | 3 cut(s) | 156, 635, 910 |
| HpaII | CCGG | 1 cut(s) | 192 |
| Hpy166II | GTNNAC | 1 cut(s) | 130 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 208, 880 |
| Hpy188III | TCNNGA | 5 cut(s) | 29, 443, 735, 829, 914 |
| Hpy8I | GTNNAC | 1 cut(s) | 130 |
| Hpy99I | CGWCG | 1 cut(s) | 609 |
| HpyAV | CCTTC | 3 cut(s) | 467, 666, 982 |
| HpyCH4III | ACNGT | 1 cut(s) | 255 |
| HpyCH4IV | ACGT | 1 cut(s) | 488 |
| HpyCH4V | TGCA | 8 cut(s) | 92, 284, 450, 506, 905, 934, 1013, 1158 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1019 |
| HpySE526I | ACGT | 1 cut(s) | 488 |
| Hsp92II | CATG | 4 cut(s) | 365, 654, 832, 1033 |
| Kzo9I | GATC | 4 cut(s) | 73, 425, 891, 916 |
| LpnPI | CCDG | 4 cut(s) | 205, 507, 720, 1077 |
| Lsp1109I | GCAGC | 1 cut(s) | 76 |
| LweI | GCATC | 3 cut(s) | 459, 1167, 1168 |
| MaeI | CTAG | 1 cut(s) | 558 |
| MaeII | ACGT | 1 cut(s) | 488 |
| MaeIII | GTNAC | 2 cut(s) | 430, 718 |
| MalI | GATC | 4 cut(s) | 75, 427, 893, 918 |
| MboI | GATC | 4 cut(s) | 73, 425, 891, 916 |
| MboII | GAAGA | 9 cut(s) | 20, 66, 75, 322, 349, 677, 697, 757, 824 |
| MfeI | CAATTG | 1 cut(s) | 45 |
| MmeI | TCCRAC | 2 cut(s) | 1075, 1083 |
| MnlI | CCTC | 8 cut(s) | 43, 189, 192, 289, 323, 527, 930, 1146 |
| Mph1103I | ATGCAT | 1 cut(s) | 1160 |
| MseI | TTAA | 7 cut(s) | 38, 161, 216, 320, 341, 494, 1068 |
| MslI | CAYNNNNRTG | 1 cut(s) | 905 |
| MspI | CCGG | 1 cut(s) | 192 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MunI | CAATTG | 1 cut(s) | 45 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1019 |
| NciI | CCSGG | 1 cut(s) | 193 |
| NdeII | GATC | 4 cut(s) | 73, 425, 891, 916 |
| NlaIII | CATG | 4 cut(s) | 365, 654, 832, 1033 |
| NmuCI | GTSAC | 1 cut(s) | 430 |
| NsiI | ATGCAT | 1 cut(s) | 1160 |
| PagI | TCATGA | 1 cut(s) | 828 |
| PfeI | GAWTC | 3 cut(s) | 156, 635, 910 |
| PkrI | GCNGC | 1 cut(s) | 91 |
| PshBI | ATTAAT | 1 cut(s) | 341 |
| PsiI | TTATAA | 1 cut(s) | 171 |
| RsaI | GTAC | 4 cut(s) | 149, 376, 1028, 1172 |
| RsaNI | GTAC | 4 cut(s) | 148, 375, 1027, 1171 |
| RseI | CAYNNNNRTG | 1 cut(s) | 905 |
| SaqAI | TTAA | 7 cut(s) | 38, 161, 216, 320, 341, 494, 1068 |
| SatI | GCNGC | 1 cut(s) | 90 |
| Sau3AI | GATC | 4 cut(s) | 73, 425, 891, 916 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SetI | ASST | 6 cut(s) | 121, 306, 334, 491, 526, 963 |
| SfaNI | GCATC | 3 cut(s) | 459, 1167, 1168 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 905 |
| SspMI | CTAG | 1 cut(s) | 558 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| StyI | CCWWGG | 1 cut(s) | 660 |
| TaaI | ACNGT | 1 cut(s) | 255 |
| TaiI | ACGT | 1 cut(s) | 491 |
| TaqI | TCGA | 1 cut(s) | 28 |
| TatI | WGTACW | 3 cut(s) | 147, 374, 1170 |
| TfiI | GAWTC | 3 cut(s) | 156, 635, 910 |
| Tru1I | TTAA | 7 cut(s) | 38, 161, 216, 320, 341, 494, 1068 |
| Tru9I | TTAA | 7 cut(s) | 38, 161, 216, 320, 341, 494, 1068 |
| TscAI | CASTG | 2 cut(s) | 435, 912 |
| TseFI | GTSAC | 1 cut(s) | 430 |
| TseI | GCWGC | 1 cut(s) | 89 |
| Tsp45I | GTSAC | 1 cut(s) | 430 |
| TspDTI | ATGAA | 5 cut(s) | 27, 639, 729, 817, 866 |
| TspRI | CASTG | 2 cut(s) | 435, 912 |
| VspI | ATTAAT | 1 cut(s) | 341 |
| XapI | RAATTY | 6 cut(s) | 57, 163, 322, 565, 853, 1212 |
| XspI | CTAG | 1 cut(s) | 558 |
| Zsp2I | ATGCAT | 1 cut(s) | 1160 |