BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 524, 540, 1891 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 338, 420, 2187 |
| AciI | CCGC | 6 cut(s) | 397, 697, 925, 1000, 1422, 1964 |
| AcoI | YGGCCR | 1 cut(s) | 1419 |
| AcsI | RAATTY | 5 cut(s) | 1156, 1472, 1794, 1910, 1933 |
| AcuI | CTGAAG | 4 cut(s) | 39, 168, 770, 1287 |
| AcvI | CACGTG | 1 cut(s) | 902 |
| AcyI | GRCGYC | 1 cut(s) | 541 |
| AfaI | GTAC | 9 cut(s) | 777, 1242, 1292, 1706, 1760, 1922, 2033, 2135, 2179 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 116, 338, 420, 583, 916, 939, 1181, 1495, 2187 |
| AflII | CTTAAG | 1 cut(s) | 1334 |
| AflIII | ACRYGT | 1 cut(s) | 901 |
| AjiI | CACGTC | 1 cut(s) | 922 |
| AjnI | CCWGG | 4 cut(s) | 138, 582, 757, 790 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 254, 286 |
| Alw21I | GWGCWC | 3 cut(s) | 60, 1531, 1857 |
| Alw26I | GTCTC | 4 cut(s) | 328, 362, 523, 1511 |
| Alw44I | GTGCAC | 1 cut(s) | 1527 |
| Ama87I | CYCGRG | 1 cut(s) | 1980 |
| AoxI | GGCC | 1 cut(s) | 1419 |
| ApaLI | GTGCAC | 1 cut(s) | 1527 |
| ApeKI | GCWGC | 7 cut(s) | 106, 566, 896, 991, 1003, 1145, 1224 |
| ApoI | RAATTY | 5 cut(s) | 1156, 1472, 1794, 1910, 1933 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 628, 660 |
| AseI | ATTAAT | 1 cut(s) | 1698 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1323 |
| AspLEI | GCGC | 3 cut(s) | 543, 566, 1213 |
| AspS9I | GGNCC | 1 cut(s) | 558 |
| AsuC2I | CCSGG | 3 cut(s) | 275, 964, 1277 |
| AsuHPI | GGTGA | 6 cut(s) | 127, 424, 524, 1636, 1780, 2196 |
| AvaI | CYCGRG | 1 cut(s) | 1980 |
| AvaII | GGWCC | 1 cut(s) | 558 |
| AxyI | CCTNAGG | 2 cut(s) | 536, 2209 |
| BaeGI | GKGCMC | 2 cut(s) | 969, 1531 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1032, 1065 |
| BamHI | GGATCC | 2 cut(s) | 1654, 1750 |
| BanI | GGYRCC | 3 cut(s) | 524, 540, 1891 |
| BanII | GRGCYC | 2 cut(s) | 60, 1311 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 768, 800 |
| BauI | CACGAG | 3 cut(s) | 1850, 1988, 2055 |
| BbrPI | CACGTG | 1 cut(s) | 902 |
| BbsI | GAAGAC | 2 cut(s) | 27, 1946 |
| Bbv12I | GWGCWC | 3 cut(s) | 60, 1531, 1857 |
| BbvI | GCAGC | 7 cut(s) | 118, 553, 883, 978, 990, 1132, 1236 |
| BciT130I | CCWGG | 4 cut(s) | 140, 584, 759, 792 |
| BciVI | GTATCC | 2 cut(s) | 339, 1033 |
| BclI | TGATCA | 4 cut(s) | 30, 682, 717, 1120 |
| BcnI | CCSGG | 3 cut(s) | 275, 964, 1277 |
| BcoDI | GTCTC | 4 cut(s) | 328, 362, 523, 1511 |
| BfaI | CTAG | 6 cut(s) | 390, 660, 1208, 1565, 1688, 2003 |
| BfmI | CTRYAG | 4 cut(s) | 740, 1044, 1734, 2082 |
| BfoI | RGCGCY | 1 cut(s) | 544 |
| BfrI | CTTAAG | 1 cut(s) | 1334 |
| BfuI | GTATCC | 2 cut(s) | 339, 1033 |
| BglII | AGATCT | 1 cut(s) | 1627 |
| BmcAI | AGTACT | 1 cut(s) | 1242 |
| Bme1390I | CCNGG | 7 cut(s) | 140, 275, 584, 759, 792, 964, 1277 |
| Bme18I | GGWCC | 1 cut(s) | 558 |
| BmeT110I | CYCGRG | 1 cut(s) | 1980 |
| BmgBI | CACGTC | 1 cut(s) | 922 |
| BmgT120I | GGNCC | 1 cut(s) | 558 |
| BmiI | GGNNCC | 9 cut(s) | 165, 526, 542, 559, 1023, 1656, 1752, 1893, 1968 |
| BmrFI | CCNGG | 7 cut(s) | 140, 275, 584, 759, 792, 964, 1277 |
| BmsI | GCATC | 6 cut(s) | 31, 967, 1293, 1456, 1906, 2181 |
| BpiI | GAAGAC | 2 cut(s) | 27, 1946 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 284, 316, 308, 340 |
| BpmI | CTGGAG | 2 cut(s) | 1109, 1265 |
| BpuEI | CTTGAG | 1 cut(s) | 921 |
| BpuMI | CCSGG | 3 cut(s) | 275, 964, 1277 |
| BsaAI | YACGTR | 3 cut(s) | 902, 1294, 1461 |
| BsaBI | GATNNNNATC | 1 cut(s) | 230 |
| BsaHI | GRCGYC | 1 cut(s) | 541 |
| BsaJI | CCNNGG | 7 cut(s) | 138, 414, 791, 829, 1754, 2160, 2181 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1958, 1988 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 116, 338, 420, 583, 916, 939, 1181, 1495, 2187 |
| Bse1I | ACTGG | 5 cut(s) | 528, 989, 1248, 1712, 2075 |
| Bse21I | CCTNAGG | 2 cut(s) | 536, 2209 |
| Bse3DI | GCAATG | 5 cut(s) | 705, 706, 840, 1227, 2144 |
| Bse8I | GATNNNNATC | 1 cut(s) | 230 |
| BseBI | CCWGG | 4 cut(s) | 140, 584, 759, 792 |
| BseDI | CCNNGG | 7 cut(s) | 138, 414, 791, 829, 1754, 2160, 2181 |
| BseGI | GGATG | 6 cut(s) | 46, 461, 608, 754, 1560, 2196 |
| BseJI | GATNNNNATC | 1 cut(s) | 230 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 116, 338, 420, 583, 916, 939, 1181, 1495, 2187 |
| BseMI | GCAATG | 5 cut(s) | 705, 706, 840, 1227, 2144 |
| BseMII | CTCAG | 5 cut(s) | 534, 550, 1211, 1403, 1419 |
| BseNI | ACTGG | 5 cut(s) | 528, 989, 1248, 1712, 2075 |
| BseRI | GAGGAG | 1 cut(s) | 380 |
| BseSI | GKGCMC | 2 cut(s) | 969, 1531 |
| BseXI | GCAGC | 7 cut(s) | 118, 553, 883, 978, 990, 1132, 1236 |
| BsgI | GTGCAG | 2 cut(s) | 552, 882 |
| BshFI | GGCC | 1 cut(s) | 1421 |
| BshNI | GGYRCC | 3 cut(s) | 524, 540, 1891 |
| BsiHKAI | GWGCWC | 3 cut(s) | 60, 1531, 1857 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1980 |
| BsiSI | CCGG | 4 cut(s) | 38, 275, 963, 1276 |
| BslFI | GGGAC | 2 cut(s) | 1292, 1337 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 116, 338, 420, 583, 916, 939, 1181, 1495, 2187 |
| BsmAI | GTCTC | 4 cut(s) | 328, 362, 523, 1511 |
| BsmFI | GGGAC | 2 cut(s) | 1292, 1337 |
| BsmI | GAATGC | 1 cut(s) | 1255 |
| BsnI | GGCC | 1 cut(s) | 1421 |
| BsoBI | CYCGRG | 1 cut(s) | 1980 |
| Bsp1286I | GDGCHC | 5 cut(s) | 60, 969, 1311, 1531, 1857 |
| Bsp1407I | TGTACA | 1 cut(s) | 775 |
| Bsp19I | CCATGG | 1 cut(s) | 414 |
| BspACI | CCGC | 6 cut(s) | 397, 697, 925, 1000, 1422, 1964 |
| BspANI | GGCC | 1 cut(s) | 1421 |
| BspCNI | CTCAG | 5 cut(s) | 533, 549, 1212, 1402, 1420 |
| BspHI | TCATGA | 6 cut(s) | 79, 214, 376, 1117, 1134, 1926 |
| BspLI | GGNNCC | 9 cut(s) | 165, 526, 542, 559, 1023, 1656, 1752, 1893, 1968 |
| BspMAI | CTGCAG | 2 cut(s) | 744, 1048 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BspT107I | GGYRCC | 3 cut(s) | 524, 540, 1891 |
| BspTI | CTTAAG | 1 cut(s) | 1334 |
| BsrDI | GCAATG | 5 cut(s) | 705, 706, 840, 1227, 2144 |
| BsrGI | TGTACA | 1 cut(s) | 775 |
| BsrI | ACTGG | 5 cut(s) | 528, 989, 1248, 1712, 2075 |
| BssECI | CCNNGG | 7 cut(s) | 138, 414, 791, 829, 1754, 2160, 2181 |
| BssNI | GRCGYC | 1 cut(s) | 541 |
| BssSI | CACGAG | 3 cut(s) | 1850, 1988, 2055 |
| BssT1I | CCWWGG | 3 cut(s) | 414, 829, 2181 |
| Bst2BI | CACGAG | 3 cut(s) | 1850, 1988, 2055 |
| Bst2UI | CCWGG | 4 cut(s) | 140, 584, 759, 792 |
| Bst4CI | ACNGT | 5 cut(s) | 338, 445, 826, 2086, 2161 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstACI | GRCGYC | 1 cut(s) | 541 |
| BstAFI | CTTAAG | 1 cut(s) | 1334 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 480 |
| BstAUI | TGTACA | 1 cut(s) | 775 |
| BstBAI | YACGTR | 3 cut(s) | 902, 1294, 1461 |
| BstC8I | GCNNGC | 4 cut(s) | 395, 485, 1198, 2151 |
| BstDEI | CTNAG | 7 cut(s) | 520, 536, 872, 1220, 1389, 1428, 2209 |
| BstDSI | CCRYGG | 2 cut(s) | 414, 2160 |
| BstF5I | GGATG | 6 cut(s) | 46, 461, 608, 754, 1560, 2196 |
| BstH2I | RGCGCY | 1 cut(s) | 544 |
| BstHHI | GCGC | 3 cut(s) | 543, 566, 1213 |
| BstMAI | GTCTC | 4 cut(s) | 328, 362, 523, 1511 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 394, 480, 489, 997, 1000, 1975 |
| BstNI | CCWGG | 4 cut(s) | 140, 584, 759, 792 |
| BstSCI | CCNGG | 7 cut(s) | 138, 273, 582, 757, 790, 962, 1275 |
| BstSFI | CTRYAG | 4 cut(s) | 740, 1044, 1734, 2082 |
| BstSLI | GKGCMC | 2 cut(s) | 969, 1531 |
| BstSNI | TACGTA | 1 cut(s) | 1461 |
| BstV1I | GCAGC | 7 cut(s) | 118, 553, 883, 978, 990, 1132, 1236 |
| BstV2I | GAAGAC | 2 cut(s) | 27, 1946 |
| BstX2I | RGATCY | 4 cut(s) | 225, 1627, 1654, 1750 |
| BstYI | RGATCY | 4 cut(s) | 225, 1627, 1654, 1750 |
| Bsu36I | CCTNAGG | 2 cut(s) | 536, 2209 |
| BsuI | GTATCC | 2 cut(s) | 339, 1033 |
| BsuRI | GGCC | 1 cut(s) | 1421 |
| BtgI | CCRYGG | 2 cut(s) | 414, 2160 |
| BtrI | CACGTC | 1 cut(s) | 922 |
| BtsCI | GGATG | 6 cut(s) | 46, 461, 608, 754, 1560, 2196 |
| BtsI | GCAGTG | 4 cut(s) | 60, 691, 737, 1746 |
| BtsIMutI | CAGTG | 6 cut(s) | 60, 343, 691, 737, 1397, 1746 |
| Cac8I | GCNNGC | 4 cut(s) | 395, 485, 1198, 2151 |
| CciI | TCATGA | 6 cut(s) | 79, 214, 376, 1117, 1134, 1926 |
| CfoI | GCGC | 3 cut(s) | 543, 566, 1213 |
| Cfr13I | GGNCC | 1 cut(s) | 558 |
| Csp6I | GTAC | 9 cut(s) | 776, 1241, 1291, 1705, 1759, 1921, 2032, 2134, 2178 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1373, 1408 |
| CviQI | GTAC | 9 cut(s) | 776, 1241, 1291, 1705, 1759, 1921, 2032, 2134, 2178 |
| DdeI | CTNAG | 7 cut(s) | 520, 536, 872, 1220, 1389, 1428, 2209 |
| DinI | GGCGCC | 1 cut(s) | 542 |
| DraI | TTTAAA | 1 cut(s) | 1161 |
| EaeI | YGGCCR | 1 cut(s) | 1419 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| EciI | GGCGGA | 1 cut(s) | 1979 |
| Ecl136II | GAGCTC | 1 cut(s) | 58 |
| Eco105I | TACGTA | 1 cut(s) | 1461 |
| Eco130I | CCWWGG | 3 cut(s) | 414, 829, 2181 |
| Eco24I | GRGCYC | 2 cut(s) | 60, 1311 |
| Eco47I | GGWCC | 1 cut(s) | 558 |
| Eco53kI | GAGCTC | 1 cut(s) | 58 |
| Eco57I | CTGAAG | 4 cut(s) | 39, 168, 770, 1287 |
| Eco72I | CACGTG | 1 cut(s) | 902 |
| Eco81I | CCTNAGG | 2 cut(s) | 536, 2209 |
| Eco88I | CYCGRG | 1 cut(s) | 1980 |
| EcoICRI | GAGCTC | 1 cut(s) | 58 |
| EcoO109I | RGGNCCY | 1 cut(s) | 558 |
| EcoRI | GAATTC | 1 cut(s) | 1472 |
| EcoRII | CCWGG | 4 cut(s) | 138, 582, 757, 790 |
| EcoT14I | CCWWGG | 3 cut(s) | 414, 829, 2181 |
| EcoT22I | ATGCAT | 2 cut(s) | 499, 729 |
| EcoT38I | GRGCYC | 2 cut(s) | 60, 1311 |
| EgeI | GGCGCC | 1 cut(s) | 542 |
| EheI | GGCGCC | 1 cut(s) | 542 |
| ErhI | CCWWGG | 3 cut(s) | 414, 829, 2181 |
| FaqI | GGGAC | 2 cut(s) | 1292, 1337 |
| FbaI | TGATCA | 4 cut(s) | 30, 682, 717, 1120 |
| FokI | GGATG | 6 cut(s) | 53, 468, 595, 741, 1547, 2203 |
| FriOI | GRGCYC | 2 cut(s) | 60, 1311 |
| FspBI | CTAG | 6 cut(s) | 390, 660, 1208, 1565, 1688, 2003 |
| GlaI | GCGC | 3 cut(s) | 542, 565, 1212 |
| GsuI | CTGGAG | 2 cut(s) | 1109, 1265 |
| HaeII | RGCGCY | 1 cut(s) | 544 |
| HaeIII | GGCC | 1 cut(s) | 1421 |
| HapII | CCGG | 4 cut(s) | 38, 275, 963, 1276 |
| HhaI | GCGC | 3 cut(s) | 543, 566, 1213 |
| Hin1I | GRCGYC | 1 cut(s) | 541 |
| Hin6I | GCGC | 3 cut(s) | 541, 564, 1211 |
| HinP1I | GCGC | 3 cut(s) | 541, 564, 1211 |
| HincII | GTYRAC | 1 cut(s) | 1187 |
| HindII | GTYRAC | 1 cut(s) | 1187 |
| HindIII | AAGCTT | 1 cut(s) | 1163 |
| HinfI | GANTC | 9 cut(s) | 347, 781, 1034, 1084, 1519, 1618, 1845, 1983, 2096 |
| HpaII | CCGG | 4 cut(s) | 38, 275, 963, 1276 |
| HphI | GGTGA | 6 cut(s) | 127, 424, 524, 1636, 1780, 2196 |
| Hpy166II | GTNNAC | 4 cut(s) | 1187, 1529, 1987, 2032 |
| Hpy188I | TCNGA | 8 cut(s) | 601, 855, 1039, 1221, 1306, 1429, 1636, 1755 |
| Hpy8I | GTNNAC | 4 cut(s) | 1187, 1529, 1987, 2032 |
| Hpy99I | CGWCG | 1 cut(s) | 645 |
| HpyAV | CCTTC | 4 cut(s) | 547, 1082, 1186, 1890 |
| HpyCH4III | ACNGT | 5 cut(s) | 338, 445, 826, 2086, 2161 |
| HpyCH4IV | ACGT | 6 cut(s) | 546, 640, 901, 921, 1293, 1460 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 394, 480, 489, 997, 1000, 1975 |
| HpyF3I | CTNAG | 7 cut(s) | 520, 536, 872, 1220, 1389, 1428, 2209 |
| HpySE526I | ACGT | 6 cut(s) | 546, 640, 901, 921, 1293, 1460 |
| Hsp92I | GRCGYC | 1 cut(s) | 541 |
| HspAI | GCGC | 3 cut(s) | 541, 564, 1211 |
| KasI | GGCGCC | 1 cut(s) | 540 |
| Ksp22I | TGATCA | 4 cut(s) | 30, 682, 717, 1120 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LmnI | GCTCC | 4 cut(s) | 169, 424, 1819, 1966 |
| Lsp1109I | GCAGC | 7 cut(s) | 118, 553, 883, 978, 990, 1132, 1236 |
| LweI | GCATC | 6 cut(s) | 31, 967, 1293, 1456, 1906, 2181 |
| MaeI | CTAG | 6 cut(s) | 390, 660, 1208, 1565, 1688, 2003 |
| MaeII | ACGT | 6 cut(s) | 546, 640, 901, 921, 1293, 1460 |
| MaeIII | GTNAC | 6 cut(s) | 530, 644, 958, 1294, 1667, 2057 |
| MfeI | CAATTG | 1 cut(s) | 1201 |
| MflI | RGATCY | 4 cut(s) | 225, 1627, 1654, 1750 |
| MhlI | GDGCHC | 5 cut(s) | 60, 969, 1311, 1531, 1857 |
| Mly113I | GGCGCC | 1 cut(s) | 541 |
| MlyI | GAGTC | 5 cut(s) | 341, 1028, 1093, 1513, 1992 |
| Mph1103I | ATGCAT | 2 cut(s) | 499, 729 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1323 |
| MseI | TTAA | 6 cut(s) | 1062, 1160, 1266, 1335, 1698, 2018 |
| MslI | CAYNNNNRTG | 1 cut(s) | 252 |
| MspCI | CTTAAG | 1 cut(s) | 1334 |
| MspI | CCGG | 4 cut(s) | 38, 275, 963, 1276 |
| MspR9I | CCNGG | 7 cut(s) | 140, 275, 584, 759, 792, 964, 1277 |
| MunI | CAATTG | 1 cut(s) | 1201 |
| Mva1269I | GAATGC | 1 cut(s) | 1255 |
| MvaI | CCWGG | 4 cut(s) | 140, 584, 759, 792 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 394, 480, 489, 997, 1000, 1975 |
| NarI | GGCGCC | 1 cut(s) | 541 |
| NciI | CCSGG | 3 cut(s) | 275, 964, 1277 |
| NcoI | CCATGG | 1 cut(s) | 414 |
| NlaIV | GGNNCC | 9 cut(s) | 165, 526, 542, 559, 1023, 1656, 1752, 1893, 1968 |
| NmuCI | GTSAC | 4 cut(s) | 530, 644, 1294, 2057 |
| NsiI | ATGCAT | 2 cut(s) | 499, 729 |
| PaeR7I | CTCGAG | 1 cut(s) | 1980 |
| PagI | TCATGA | 6 cut(s) | 79, 214, 376, 1117, 1134, 1926 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 649 |
| PctI | GAATGC | 1 cut(s) | 1255 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1323 |
| PfeI | GAWTC | 4 cut(s) | 781, 1618, 1845, 2096 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 338, 420, 2187 |
| PfoI | TCCNGGA | 2 cut(s) | 273, 1275 |
| PleI | GAGTC | 5 cut(s) | 341, 1028, 1092, 1513, 1991 |
| PluTI | GGCGCC | 1 cut(s) | 544 |
| PmaCI | CACGTG | 1 cut(s) | 902 |
| PmlI | CACGTG | 1 cut(s) | 902 |
| PpsI | GAGTC | 5 cut(s) | 341, 1028, 1092, 1513, 1991 |
| Ppu21I | YACGTR | 3 cut(s) | 902, 1294, 1461 |
| PpuMI | RGGWCCY | 1 cut(s) | 558 |
| PshBI | ATTAAT | 1 cut(s) | 1698 |
| Psp124BI | GAGCTC | 1 cut(s) | 60 |
| Psp5II | RGGWCCY | 1 cut(s) | 558 |
| Psp6I | CCWGG | 4 cut(s) | 138, 582, 757, 790 |
| PspCI | CACGTG | 1 cut(s) | 902 |
| PspGI | CCWGG | 4 cut(s) | 138, 582, 757, 790 |
| PspN4I | GGNNCC | 9 cut(s) | 165, 526, 542, 559, 1023, 1656, 1752, 1893, 1968 |
| PspPI | GGNCC | 1 cut(s) | 558 |
| PspPPI | RGGWCCY | 1 cut(s) | 558 |
| PspXI | VCTCGAGB | 1 cut(s) | 1980 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1763, 1795, 2070, 2102 |
| PstI | CTGCAG | 2 cut(s) | 744, 1048 |
| PsuI | RGATCY | 4 cut(s) | 225, 1627, 1654, 1750 |
| RsaI | GTAC | 9 cut(s) | 777, 1242, 1292, 1706, 1760, 1922, 2033, 2135, 2179 |
| RsaNI | GTAC | 9 cut(s) | 776, 1241, 1291, 1705, 1759, 1921, 2032, 2134, 2178 |
| RseI | CAYNNNNRTG | 1 cut(s) | 252 |
| SacI | GAGCTC | 1 cut(s) | 60 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SaqAI | TTAA | 6 cut(s) | 1062, 1160, 1266, 1335, 1698, 2018 |
| Sau96I | GGNCC | 1 cut(s) | 558 |
| ScaI | AGTACT | 1 cut(s) | 1242 |
| SchI | GAGTC | 5 cut(s) | 341, 1028, 1093, 1513, 1992 |
| ScrFI | CCNGG | 7 cut(s) | 140, 275, 584, 759, 792, 964, 1277 |
| SduI | GDGCHC | 5 cut(s) | 60, 969, 1311, 1531, 1857 |
| SfaNI | GCATC | 6 cut(s) | 31, 967, 1293, 1456, 1906, 2181 |
| SfcI | CTRYAG | 4 cut(s) | 740, 1044, 1734, 2082 |
| SfoI | GGCGCC | 1 cut(s) | 542 |
| Sfr274I | CTCGAG | 1 cut(s) | 1980 |
| SinI | GGWCC | 1 cut(s) | 558 |
| SlaI | CTCGAG | 1 cut(s) | 1980 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 252 |
| SmlI | CTYRAG | 3 cut(s) | 936, 1334, 1980 |
| SmoI | CTYRAG | 3 cut(s) | 936, 1334, 1980 |
| SnaBI | TACGTA | 1 cut(s) | 1461 |
| SsiI | CCGC | 6 cut(s) | 397, 697, 925, 1000, 1422, 1964 |
| SspDI | GGCGCC | 1 cut(s) | 540 |
| SspI | AATATT | 1 cut(s) | 52 |
| SspMI | CTAG | 6 cut(s) | 390, 660, 1208, 1565, 1688, 2003 |
| SstI | GAGCTC | 1 cut(s) | 60 |
| StyD4I | CCNGG | 7 cut(s) | 138, 273, 582, 757, 790, 962, 1275 |
| StyI | CCWWGG | 3 cut(s) | 414, 829, 2181 |
| TaaI | ACNGT | 5 cut(s) | 338, 445, 826, 2086, 2161 |
| TaiI | ACGT | 6 cut(s) | 549, 643, 904, 924, 1296, 1463 |
| TaqI | TCGA | 3 cut(s) | 1613, 1843, 1981 |
| TatI | WGTACW | 3 cut(s) | 775, 1240, 2133 |
| TauI | GCSGC | 3 cut(s) | 699, 1003, 1424 |
| TfiI | GAWTC | 4 cut(s) | 781, 1618, 1845, 2096 |
| Tru1I | TTAA | 6 cut(s) | 1062, 1160, 1266, 1335, 1698, 2018 |
| Tru9I | TTAA | 6 cut(s) | 1062, 1160, 1266, 1335, 1698, 2018 |
| TscAI | CASTG | 6 cut(s) | 67, 343, 698, 744, 1397, 1746 |
| TseFI | GTSAC | 4 cut(s) | 530, 644, 1294, 2057 |
| TseI | GCWGC | 7 cut(s) | 106, 566, 896, 991, 1003, 1145, 1224 |
| Tsp45I | GTSAC | 4 cut(s) | 530, 644, 1294, 2057 |
| TspGWI | ACGGA | 1 cut(s) | 566 |
| TspRI | CASTG | 6 cut(s) | 67, 343, 698, 744, 1397, 1746 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 338, 420, 2187 |
| Vha464I | CTTAAG | 1 cut(s) | 1334 |
| VneI | GTGCAC | 1 cut(s) | 1527 |
| VpaK11BI | GGWCC | 1 cut(s) | 558 |
| VspI | ATTAAT | 1 cut(s) | 1698 |
| XapI | RAATTY | 5 cut(s) | 1156, 1472, 1794, 1910, 1933 |
| XhoI | CTCGAG | 1 cut(s) | 1980 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1323 |
| XspI | CTAG | 6 cut(s) | 390, 660, 1208, 1565, 1688, 2003 |
| ZrmI | AGTACT | 1 cut(s) | 1242 |
| Zsp2I | ATGCAT | 2 cut(s) | 499, 729 |