Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 504 - 586 | 4.7e-11 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2026 |
| Acc36I | ACCTGC | 1 cut(s) | 345 |
| Acc65I | GGTACC | 1 cut(s) | 1919 |
| AccB1I | GGYRCC | 3 cut(s) | 398, 1865, 1919 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 684 |
| AciI | CCGC | 2 cut(s) | 960, 2081 |
| AclWI | GGATC | 4 cut(s) | 110, 1721, 1778, 2508 |
| AcoI | YGGCCR | 1 cut(s) | 197 |
| AcsI | RAATTY | 7 cut(s) | 70, 826, 840, 1243, 2230, 2284, 2437 |
| AcuI | CTGAAG | 1 cut(s) | 1265 |
| AfaI | GTAC | 5 cut(s) | 166, 172, 232, 1921, 2303 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 604, 684, 762, 888, 1025 |
| AflIII | ACRYGT | 1 cut(s) | 2337 |
| AgeI | ACCGGT | 1 cut(s) | 1922 |
| AjiI | CACGTC | 1 cut(s) | 2338 |
| AjnI | CCWGG | 2 cut(s) | 324, 445 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1985, 2017 |
| Alw21I | GWGCWC | 2 cut(s) | 273, 2070 |
| Alw26I | GTCTC | 3 cut(s) | 211, 1873, 2030 |
| Alw44I | GTGCAC | 1 cut(s) | 2066 |
| AlwI | GGATC | 4 cut(s) | 110, 1721, 1778, 2508 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1391 |
| AoxI | GGCC | 4 cut(s) | 197, 1427, 1592, 2167 |
| ApaLI | GTGCAC | 1 cut(s) | 2066 |
| ApeKI | GCWGC | 7 cut(s) | 152, 405, 583, 1391, 1973, 2107, 2651 |
| ApoI | RAATTY | 7 cut(s) | 70, 826, 840, 1243, 2230, 2284, 2437 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1568, 1600 |
| AsiGI | ACCGGT | 1 cut(s) | 1922 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 468, 612, 1541, 2135 |
| Asp718I | GGTACC | 1 cut(s) | 1919 |
| AspA2I | CCTAGG | 1 cut(s) | 641 |
| AspS9I | GGNCC | 2 cut(s) | 322, 1427 |
| AsuHPI | GGTGA | 3 cut(s) | 587, 1843, 2565 |
| AsuNHI | GCTAGC | 2 cut(s) | 727, 731 |
| AvaII | GGWCC | 1 cut(s) | 322 |
| AvrII | CCTAGG | 1 cut(s) | 641 |
| BaeGI | GKGCMC | 2 cut(s) | 1868, 2070 |
| BanI | GGYRCC | 3 cut(s) | 398, 1865, 1919 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2184, 2216 |
| BauI | CACGAG | 1 cut(s) | 2033 |
| BbsI | GAAGAC | 2 cut(s) | 1320, 2013 |
| Bbv12I | GWGCWC | 2 cut(s) | 273, 2070 |
| BbvI | GCAGC | 7 cut(s) | 139, 417, 570, 1378, 1960, 2119, 2638 |
| BccI | CCATC | 9 cut(s) | 184, 253, 301, 305, 809, 1093, 1633, 1963, 2121 |
| BceAI | ACGGC | 2 cut(s) | 212, 816 |
| BciT130I | CCWGG | 2 cut(s) | 326, 447 |
| BcoDI | GTCTC | 3 cut(s) | 211, 1873, 2030 |
| BfaI | CTAG | 7 cut(s) | 642, 660, 728, 732, 1932, 2444, 2606 |
| BfmI | CTRYAG | 1 cut(s) | 366 |
| BfuAI | ACCTGC | 1 cut(s) | 345 |
| BglII | AGATCT | 3 cut(s) | 457, 1626, 2397 |
| BisI | GCNGC | 8 cut(s) | 153, 406, 584, 1392, 1974, 2081, 2108, 2652 |
| BlnI | CCTAGG | 1 cut(s) | 641 |
| BlsI | GCNGC | 8 cut(s) | 154, 407, 585, 1393, 1975, 2082, 2109, 2653 |
| BmcAI | AGTACT | 1 cut(s) | 166 |
| Bme1390I | CCNGG | 2 cut(s) | 326, 447 |
| Bme18I | GGWCC | 1 cut(s) | 322 |
| BmgBI | CACGTC | 1 cut(s) | 2338 |
| BmgT120I | GGNCC | 2 cut(s) | 322, 1427 |
| BmiI | GGNNCC | 3 cut(s) | 400, 1867, 1921 |
| BmrFI | CCNGG | 2 cut(s) | 326, 447 |
| BmsI | GCATC | 6 cut(s) | 529, 965, 987, 2152, 2443, 2464 |
| BmtI | GCTAGC | 2 cut(s) | 731, 735 |
| BpiI | GAAGAC | 2 cut(s) | 1320, 2013 |
| BpuEI | CTTGAG | 3 cut(s) | 31, 1295, 1463 |
| Bsa29I | ATCGAT | 2 cut(s) | 978, 2391 |
| BsaAI | YACGTR | 1 cut(s) | 762 |
| BsaI | GGTCTC | 3 cut(s) | 211, 1873, 2030 |
| BsaJI | CCNNGG | 3 cut(s) | 221, 445, 641 |
| BsaWI | WCCGGW | 1 cut(s) | 1922 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 157, 187 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 604, 684, 762, 888, 1025 |
| Bse118I | RCCGGY | 2 cut(s) | 1590, 1922 |
| Bse1I | ACTGG | 4 cut(s) | 19, 172, 900, 2208 |
| Bse3DI | GCAATG | 1 cut(s) | 1897 |
| BseBI | CCWGG | 2 cut(s) | 326, 447 |
| BseCI | ATCGAT | 2 cut(s) | 978, 2391 |
| BseDI | CCNNGG | 3 cut(s) | 221, 445, 641 |
| BseGI | GGATG | 5 cut(s) | 233, 956, 1231, 1270, 2479 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 604, 684, 762, 888, 1025 |
| BseMI | GCAATG | 1 cut(s) | 1897 |
| BseMII | CTCAG | 7 cut(s) | 126, 1547, 1560, 1587, 1890, 2025, 2484 |
| BseNI | ACTGG | 4 cut(s) | 19, 172, 900, 2208 |
| BseRI | GAGGAG | 2 cut(s) | 1669, 2510 |
| BseSI | GKGCMC | 2 cut(s) | 1868, 2070 |
| BseXI | GCAGC | 7 cut(s) | 139, 417, 570, 1378, 1960, 2119, 2638 |
| BshFI | GGCC | 4 cut(s) | 199, 1429, 1594, 2169 |
| BshNI | GGYRCC | 3 cut(s) | 398, 1865, 1919 |
| BshTI | ACCGGT | 1 cut(s) | 1922 |
| BshVI | ATCGAT | 2 cut(s) | 978, 2391 |
| BsiHKAI | GWGCWC | 2 cut(s) | 273, 2070 |
| BsiSI | CCGG | 2 cut(s) | 1591, 1923 |
| BslFI | GGGAC | 3 cut(s) | 346, 1509, 2348 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 604, 684, 762, 888, 1025 |
| BsmAI | GTCTC | 3 cut(s) | 211, 1873, 2030 |
| BsmFI | GGGAC | 3 cut(s) | 346, 1509, 2348 |
| BsmI | GAATGC | 1 cut(s) | 1541 |
| BsnI | GGCC | 4 cut(s) | 199, 1429, 1594, 2169 |
| Bso31I | GGTCTC | 3 cut(s) | 211, 1873, 2030 |
| Bsp1286I | GDGCHC | 3 cut(s) | 273, 1868, 2070 |
| BspACI | CCGC | 2 cut(s) | 960, 2081 |
| BspANI | GGCC | 4 cut(s) | 199, 1429, 1594, 2169 |
| BspCNI | CTCAG | 7 cut(s) | 127, 1546, 1561, 1588, 1891, 2024, 2485 |
| BspDI | ATCGAT | 2 cut(s) | 978, 2391 |
| BspHI | TCATGA | 1 cut(s) | 2503 |
| BspLI | GGNNCC | 3 cut(s) | 400, 1867, 1921 |
| BspMI | ACCTGC | 1 cut(s) | 345 |
| BspOI | GCTAGC | 2 cut(s) | 731, 735 |
| BspPI | GGATC | 4 cut(s) | 110, 1721, 1778, 2508 |
| BspT107I | GGYRCC | 3 cut(s) | 398, 1865, 1919 |
| BspTNI | GGTCTC | 3 cut(s) | 211, 1873, 2030 |
| BsrDI | GCAATG | 1 cut(s) | 1897 |
| BsrFI | RCCGGY | 2 cut(s) | 1590, 1922 |
| BsrI | ACTGG | 4 cut(s) | 19, 172, 900, 2208 |
| BssAI | RCCGGY | 2 cut(s) | 1590, 1922 |
| BssECI | CCNNGG | 3 cut(s) | 221, 445, 641 |
| BssSI | CACGAG | 1 cut(s) | 2033 |
| BssT1I | CCWWGG | 1 cut(s) | 641 |
| Bst2BI | CACGAG | 1 cut(s) | 2033 |
| Bst2UI | CCWGG | 2 cut(s) | 326, 447 |
| Bst4CI | ACNGT | 6 cut(s) | 740, 1462, 1523, 2023, 2157, 2675 |
| Bst6I | CTCTTC | 5 cut(s) | 221, 459, 1302, 1341, 2574 |
| BstBAI | YACGTR | 1 cut(s) | 762 |
| BstC8I | GCNNGC | 5 cut(s) | 544, 729, 733, 1681, 1983 |
| BstDEI | CTNAG | 9 cut(s) | 135, 716, 1533, 1569, 1596, 1899, 2011, 2226, 2493 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1023 |
| BstF5I | GGATG | 5 cut(s) | 233, 956, 1231, 1270, 2479 |
| BstMAI | GTCTC | 3 cut(s) | 211, 1873, 2030 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 158, 405, 1565, 1904, 1982, 2065, 2086, 2564 |
| BstNI | CCWGG | 2 cut(s) | 326, 447 |
| BstNSI | RCATGY | 3 cut(s) | 639, 906, 2596 |
| BstSCI | CCNGG | 2 cut(s) | 324, 445 |
| BstSFI | CTRYAG | 1 cut(s) | 366 |
| BstSLI | GKGCMC | 2 cut(s) | 1868, 2070 |
| BstV1I | GCAGC | 7 cut(s) | 139, 417, 570, 1378, 1960, 2119, 2638 |
| BstV2I | GAAGAC | 2 cut(s) | 1320, 2013 |
| BstX2I | RGATCY | 4 cut(s) | 457, 1626, 1726, 2397 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1239, 1961 |
| BstYI | RGATCY | 4 cut(s) | 457, 1626, 1726, 2397 |
| Bsu15I | ATCGAT | 2 cut(s) | 978, 2391 |
| BsuRI | GGCC | 4 cut(s) | 199, 1429, 1594, 2169 |
| BsuTUI | ATCGAT | 2 cut(s) | 978, 2391 |
| BtgZI | GCGATG | 1 cut(s) | 1192 |
| BtrI | CACGTC | 1 cut(s) | 2338 |
| BtsCI | GGATG | 5 cut(s) | 233, 956, 1231, 1270, 2479 |
| BtsI | GCAGTG | 1 cut(s) | 1650 |
| BtsIMutI | CAGTG | 3 cut(s) | 12, 736, 1650 |
| BveI | ACCTGC | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 5 cut(s) | 544, 729, 733, 1681, 1983 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1391 |
| CciI | TCATGA | 1 cut(s) | 2503 |
| Cfr10I | RCCGGY | 2 cut(s) | 1590, 1922 |
| Cfr13I | GGNCC | 2 cut(s) | 322, 1427 |
| ClaI | ATCGAT | 2 cut(s) | 978, 2391 |
| Csp6I | GTAC | 5 cut(s) | 165, 171, 231, 1920, 2302 |
| CspAI | ACCGGT | 1 cut(s) | 1922 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2643, 2678 |
| CviQI | GTAC | 5 cut(s) | 165, 171, 231, 1920, 2302 |
| DdeI | CTNAG | 9 cut(s) | 135, 716, 1533, 1569, 1596, 1899, 2011, 2226, 2493 |
| DraI | TTTAAA | 1 cut(s) | 1666 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2026 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2026 |
| EaeI | YGGCCR | 1 cut(s) | 197 |
| Eam1104I | CTCTTC | 5 cut(s) | 221, 459, 1302, 1341, 2574 |
| EarI | CTCTTC | 5 cut(s) | 221, 459, 1302, 1341, 2574 |
| Eco130I | CCWWGG | 1 cut(s) | 641 |
| Eco31I | GGTCTC | 3 cut(s) | 211, 1873, 2030 |
| Eco32I | GATATC | 2 cut(s) | 1509, 1552 |
| Eco47I | GGWCC | 1 cut(s) | 322 |
| Eco57I | CTGAAG | 1 cut(s) | 1265 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1023 |
| EcoRI | GAATTC | 2 cut(s) | 840, 1243 |
| EcoRII | CCWGG | 2 cut(s) | 324, 445 |
| EcoRV | GATATC | 2 cut(s) | 1509, 1552 |
| EcoT14I | CCWWGG | 1 cut(s) | 641 |
| EcoT22I | ATGCAT | 1 cut(s) | 2240 |
| ErhI | CCWWGG | 1 cut(s) | 641 |
| FaqI | GGGAC | 3 cut(s) | 346, 1509, 2348 |
| FauNDI | CATATG | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 8 cut(s) | 153, 406, 584, 1392, 1974, 2081, 2108, 2652 |
| FokI | GGATG | 5 cut(s) | 220, 943, 1238, 1277, 2486 |
| Fsp4HI | GCNGC | 8 cut(s) | 153, 406, 584, 1392, 1974, 2081, 2108, 2652 |
| FspBI | CTAG | 7 cut(s) | 642, 660, 728, 732, 1932, 2444, 2606 |
| GluI | GCNGC | 8 cut(s) | 153, 406, 584, 1392, 1974, 2081, 2108, 2652 |
| HaeIII | GGCC | 4 cut(s) | 199, 1429, 1594, 2169 |
| HapII | CCGG | 2 cut(s) | 1591, 1923 |
| HincII | GTYRAC | 1 cut(s) | 936 |
| HindII | GTYRAC | 1 cut(s) | 936 |
| HindIII | AAGCTT | 1 cut(s) | 1739 |
| HinfI | GANTC | 7 cut(s) | 77, 652, 921, 1696, 2009, 2096, 2570 |
| HpaII | CCGG | 2 cut(s) | 1591, 1923 |
| HphI | GGTGA | 3 cut(s) | 587, 1843, 2565 |
| Hpy166II | GTNNAC | 4 cut(s) | 765, 936, 1834, 2068 |
| Hpy188I | TCNGA | 7 cut(s) | 58, 76, 115, 1284, 1536, 2014, 2019 |
| Hpy188III | TCNNGA | 8 cut(s) | 119, 461, 536, 925, 1947, 2504, 2512, 2626 |
| Hpy8I | GTNNAC | 4 cut(s) | 765, 936, 1834, 2068 |
| Hpy99I | CGWCG | 2 cut(s) | 1439, 2679 |
| HpyCH4III | ACNGT | 6 cut(s) | 740, 1462, 1523, 2023, 2157, 2675 |
| HpyCH4IV | ACGT | 2 cut(s) | 761, 2337 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 158, 405, 1565, 1904, 1982, 2065, 2086, 2564 |
| HpyF3I | CTNAG | 9 cut(s) | 135, 716, 1533, 1569, 1596, 1899, 2011, 2226, 2493 |
| HpySE526I | ACGT | 2 cut(s) | 761, 2337 |
| KpnI | GGTACC | 1 cut(s) | 1923 |
| LmnI | GCTCC | 6 cut(s) | 250, 268, 724, 1656, 2104, 2115 |
| Lsp1109I | GCAGC | 7 cut(s) | 139, 417, 570, 1378, 1960, 2119, 2638 |
| LweI | GCATC | 6 cut(s) | 529, 965, 987, 2152, 2443, 2464 |
| MaeI | CTAG | 7 cut(s) | 642, 660, 728, 732, 1932, 2444, 2606 |
| MaeII | ACGT | 2 cut(s) | 761, 2337 |
| MaeIII | GTNAC | 5 cut(s) | 593, 673, 796, 1495, 2028 |
| MfeI | CAATTG | 3 cut(s) | 90, 1196, 1560 |
| MflI | RGATCY | 4 cut(s) | 457, 1626, 1726, 2397 |
| MhlI | GDGCHC | 3 cut(s) | 273, 1868, 2070 |
| MlyI | GAGTC | 2 cut(s) | 646, 2003 |
| MmeI | TCCRAC | 3 cut(s) | 803, 1242, 1983 |
| Mph1103I | ATGCAT | 1 cut(s) | 2240 |
| MroXI | GAANNNNTTC | 4 cut(s) | 468, 612, 1541, 2135 |
| MspI | CCGG | 2 cut(s) | 1591, 1923 |
| MspR9I | CCNGG | 2 cut(s) | 326, 447 |
| MunI | CAATTG | 3 cut(s) | 90, 1196, 1560 |
| Mva1269I | GAATGC | 1 cut(s) | 1541 |
| MvaI | CCWGG | 2 cut(s) | 326, 447 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 158, 405, 1565, 1904, 1982, 2065, 2086, 2564 |
| NdeI | CATATG | 1 cut(s) | 388 |
| NheI | GCTAGC | 2 cut(s) | 727, 731 |
| NlaIV | GGNNCC | 3 cut(s) | 400, 1867, 1921 |
| NmeAIII | GCCGAG | 1 cut(s) | 1837 |
| NmuCI | GTSAC | 3 cut(s) | 593, 1495, 2028 |
| NsiI | ATGCAT | 1 cut(s) | 2240 |
| NspI | RCATGY | 3 cut(s) | 639, 906, 2596 |
| PagI | TCATGA | 1 cut(s) | 2503 |
| PctI | GAATGC | 1 cut(s) | 1541 |
| PdmI | GAANNNNTTC | 4 cut(s) | 468, 612, 1541, 2135 |
| PfeI | GAWTC | 5 cut(s) | 77, 921, 1696, 2096, 2570 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 684 |
| PinAI | ACCGGT | 1 cut(s) | 1922 |
| PkrI | GCNGC | 8 cut(s) | 154, 407, 585, 1393, 1975, 2082, 2109, 2653 |
| PleI | GAGTC | 2 cut(s) | 646, 2003 |
| PpsI | GAGTC | 2 cut(s) | 646, 2003 |
| Ppu21I | YACGTR | 1 cut(s) | 762 |
| Psp6I | CCWGG | 2 cut(s) | 324, 445 |
| PspGI | CCWGG | 2 cut(s) | 324, 445 |
| PspN4I | GGNNCC | 3 cut(s) | 400, 1867, 1921 |
| PspPI | GGNCC | 2 cut(s) | 322, 1427 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1391 |
| PsuI | RGATCY | 4 cut(s) | 457, 1626, 1726, 2397 |
| RsaI | GTAC | 5 cut(s) | 166, 172, 232, 1921, 2303 |
| RsaNI | GTAC | 5 cut(s) | 165, 171, 231, 1920, 2302 |
| SatI | GCNGC | 8 cut(s) | 153, 406, 584, 1392, 1974, 2081, 2108, 2652 |
| Sau96I | GGNCC | 2 cut(s) | 322, 1427 |
| ScaI | AGTACT | 1 cut(s) | 166 |
| SchI | GAGTC | 2 cut(s) | 646, 2003 |
| ScrFI | CCNGG | 2 cut(s) | 326, 447 |
| SduI | GDGCHC | 3 cut(s) | 273, 1868, 2070 |
| SfaNI | GCATC | 6 cut(s) | 529, 965, 987, 2152, 2443, 2464 |
| SfcI | CTRYAG | 1 cut(s) | 366 |
| SinI | GGWCC | 1 cut(s) | 322 |
| SmlI | CTYRAG | 3 cut(s) | 46, 1274, 1478 |
| SmoI | CTYRAG | 3 cut(s) | 46, 1274, 1478 |
| SsiI | CCGC | 2 cut(s) | 960, 2081 |
| SspI | AATATT | 1 cut(s) | 1673 |
| SspMI | CTAG | 7 cut(s) | 642, 660, 728, 732, 1932, 2444, 2606 |
| StyD4I | CCNGG | 2 cut(s) | 324, 445 |
| StyI | CCWWGG | 1 cut(s) | 641 |
| TaaI | ACNGT | 6 cut(s) | 740, 1462, 1523, 2023, 2157, 2675 |
| TaiI | ACGT | 2 cut(s) | 764, 2340 |
| TaqII | GACCGA | 1 cut(s) | 235 |
| TatI | WGTACW | 2 cut(s) | 164, 230 |
| TauI | GCSGC | 1 cut(s) | 2083 |
| TfiI | GAWTC | 5 cut(s) | 77, 921, 1696, 2096, 2570 |
| TscAI | CASTG | 3 cut(s) | 19, 743, 1650 |
| TseFI | GTSAC | 3 cut(s) | 593, 1495, 2028 |
| TseI | GCWGC | 7 cut(s) | 152, 405, 583, 1391, 1973, 2107, 2651 |
| Tsp45I | GTSAC | 3 cut(s) | 593, 1495, 2028 |
| TspDTI | ATGAA | 8 cut(s) | 519, 799, 1031, 1709, 1842, 2193, 2205, 2392 |
| TspGWI | ACGGA | 1 cut(s) | 2319 |
| TspRI | CASTG | 3 cut(s) | 19, 743, 1650 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 684 |
| VneI | GTGCAC | 1 cut(s) | 2066 |
| VpaK11BI | GGWCC | 1 cut(s) | 322 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1023 |
| XapI | RAATTY | 7 cut(s) | 70, 826, 840, 1243, 2230, 2284, 2437 |
| XceI | RCATGY | 3 cut(s) | 639, 906, 2596 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1195 |
| XmaJI | CCTAGG | 1 cut(s) | 641 |
| XmnI | GAANNNNTTC | 4 cut(s) | 468, 612, 1541, 2135 |
| XspI | CTAG | 7 cut(s) | 642, 660, 728, 732, 1932, 2444, 2606 |
| ZrmI | AGTACT | 1 cut(s) | 166 |
| Zsp2I | ATGCAT | 1 cut(s) | 2240 |